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ERROR asSPATA2 #201

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carlosccfraga opened this issue Nov 17, 2024 · 2 comments
Open

ERROR asSPATA2 #201

carlosccfraga opened this issue Nov 17, 2024 · 2 comments

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@carlosccfraga
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carlosccfraga commented Nov 17, 2024

I hope this message finds you well. I am currently working with your package (likely SPATA2 or another spatial transcriptomics-related package) and encountered an issue when attempting to use the asMolecularAssay function on a Seurat object. Specifically, I received the following error:

spata_object2 <-
asSPATA2(
object = seurat_object,
sample_name = "T4",
platform = "VisiumSmall",
img_name = "T4",
assay_name = "Spatial",
assay_modality = "gene"
)
21:38:18 Initiating SPATA2 object of spatial platform: VisiumSmall
21:38:18 Transferring data.
Erro: unable to find an inherited method for function ‘asMolecularAssay’ for signature ‘object = "Assay"’

@kueckelj
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Hi, I think know where the problem is. I'll come back to you in no time.

@kueckelj
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Oh, I am sorry that. I did not notify you when I uploaded the fix... This was weeks ago actually. Have you reinstalled the package yet and tried it again?

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