From a86978fb154decc3bdc280cddc1292101f782af3 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Mon, 25 Mar 2024 22:11:25 +0100 Subject: [PATCH 01/13] Added docs --- cognee/config.py | 4 + cognee/infrastructure/InfrastructureConfig.py | 7 + cognee/infrastructure/llm/get_llm_client.py | 21 +- cognee/infrastructure/llm/ollama/adapter.py | 108 ++ poetry.lock | 1020 ++++++++++++----- pyproject.toml | 7 +- 6 files changed, 864 insertions(+), 303 deletions(-) create mode 100644 cognee/infrastructure/llm/ollama/adapter.py diff --git a/cognee/config.py b/cognee/config.py index 22b80a07c..e5e92dc83 100644 --- a/cognee/config.py +++ b/cognee/config.py @@ -43,6 +43,10 @@ class Config: graph_filename = os.getenv("GRAPH_NAME", "cognee_graph.pkl") # Model parameters + llm_provider: str = "ollama" + ollama_endpoint: str = "http://localhost:11434/v1" + ollama_key: Optional[str] = os.getenv("OLLAMA_API_KEY") + ollama_model: str = "gpt-3.5-turbo" model: str = "gpt-4-0125-preview" # model: str = "gpt-3.5-turbo" model_endpoint: str = "openai" diff --git a/cognee/infrastructure/InfrastructureConfig.py b/cognee/infrastructure/InfrastructureConfig.py index b8a67c8aa..c57ba5106 100644 --- a/cognee/infrastructure/InfrastructureConfig.py +++ b/cognee/infrastructure/InfrastructureConfig.py @@ -1,6 +1,8 @@ from cognee.config import Config from .databases.relational import SqliteEngine, DatabaseEngine from .databases.vector import WeaviateAdapter, VectorDBInterface +from .llm.llm_interface import LLMInterface +from .llm.openai.adapter import OpenAIAdapter config = Config() config.load() @@ -8,11 +10,15 @@ class InfrastructureConfig(): database_engine: DatabaseEngine = None vector_engine: VectorDBInterface = None + llm_engine: LLMInterface = None def get_config(self) -> dict: if self.database_engine is None: self.database_engine = SqliteEngine(config.db_path, config.db_name) + if self.llm_engine is None: + self.llm_engine = OpenAIAdapter(config.openai_key, config.model) + if self.vector_engine is None: self.vector_engine = WeaviateAdapter( config.weaviate_url, @@ -28,5 +34,6 @@ def get_config(self) -> dict: def set_config(self, new_config: dict): self.database_engine = new_config["database_engine"] self.vector_engine = new_config["vector_engine"] + self.llm_engine = new_config["llm_engine"] infrastructure_config = InfrastructureConfig() diff --git a/cognee/infrastructure/llm/get_llm_client.py b/cognee/infrastructure/llm/get_llm_client.py index c9c9fc993..d6ac1cb08 100644 --- a/cognee/infrastructure/llm/get_llm_client.py +++ b/cognee/infrastructure/llm/get_llm_client.py @@ -1,10 +1,27 @@ """Get the LLM client.""" +from enum import Enum from cognee.config import Config from .openai.adapter import OpenAIAdapter +from .ollama.adapter import OllamaAPIAdapter + +# Define an Enum for LLM Providers +class LLMProvider(Enum): + OPENAI = "openai" + OLLAMA = "ollama" config = Config() config.load() def get_llm_client(): - """Get the LLM client.""" - return OpenAIAdapter(config.openai_key, config.model) \ No newline at end of file + """Get the LLM client based on the configuration using Enums.""" + provider = LLMProvider(config.llm_provider) + + if provider == LLMProvider.OPENAI: + return OpenAIAdapter(config.openai_key, config.model) + elif provider == LLMProvider.OLLAMA: + return OllamaAPIAdapter(config.ollama_endpoint, config.ollama_key, config.ollama_model) + else: + raise ValueError(f"Unsupported LLM provider: {provider}") + +# Usage example +llm_client = get_llm_client() diff --git a/cognee/infrastructure/llm/ollama/adapter.py b/cognee/infrastructure/llm/ollama/adapter.py new file mode 100644 index 000000000..a6069e5f6 --- /dev/null +++ b/cognee/infrastructure/llm/ollama/adapter.py @@ -0,0 +1,108 @@ +import asyncio + +import aiohttp +from typing import List, Type +from pydantic import BaseModel +import instructor +from tenacity import retry, stop_after_attempt +from openai import AsyncOpenAI + +import openai +from cognee.infrastructure.llm.llm_interface import LLMInterface +from cognee.infrastructure.llm.prompts import read_query_prompt + + +class OllamaAPIAdapter(LLMInterface): + """Adapter for Ollama's API""" + + def __init__(self, ollama_endpoint, api_key: str, model: str): + + self.aclient = instructor.patch( + AsyncOpenAI( + base_url=ollama_endpoint, + api_key=api_key, # required, but unused + ), + mode=instructor.Mode.JSON, + ) + self.model = model + + @retry(stop=stop_after_attempt(5)) + def completions_with_backoff(self, **kwargs): + """Wrapper around ChatCompletion.create w/ backoff""" + # Local model + return openai.chat.completions.create(**kwargs) + + @retry(stop=stop_after_attempt(5)) + async def acompletions_with_backoff(self, **kwargs): + """Wrapper around ChatCompletion.acreate w/ backoff""" + return await openai.chat.completions.acreate(**kwargs) + + @retry(stop=stop_after_attempt(5)) + async def acreate_embedding_with_backoff(self, input: List[str], model: str = "text-embedding-3-large"): + """Wrapper around Embedding.acreate w/ backoff""" + + return await self.aclient.embeddings.create(input=input, model=model) + + async def async_get_embedding_with_backoff(self, text, model="text-embedding-3-large"): + """To get text embeddings, import/call this function + It specifies defaults + handles rate-limiting + is async""" + text = text.replace("\n", " ") + response = await self.aclient.embeddings.create(input=text, model=model) + embedding = response.data[0].embedding + return embedding + + @retry(stop=stop_after_attempt(5)) + def create_embedding_with_backoff(self, **kwargs): + """Wrapper around Embedding.create w/ backoff""" + return openai.embeddings.create(**kwargs) + + def get_embedding_with_backoff(self, text: str, model: str = "text-embedding-3-large"): + """To get text embeddings, import/call this function + It specifies defaults + handles rate-limiting + :param text: str + :param model: str + """ + text = text.replace("\n", " ") + response = self.create_embedding_with_backoff(input=[text], model=model) + embedding = response.data[0].embedding + return embedding + + async def async_get_batch_embeddings_with_backoff(self, texts: List[str], models: List[str]): + """To get multiple text embeddings in parallel, import/call this function + It specifies defaults + handles rate-limiting + is async""" + # Collect all coroutines + coroutines = (self.async_get_embedding_with_backoff(text, model) + for text, model in zip(texts, models)) + + # Run the coroutines in parallel and gather the results + embeddings = await asyncio.gather(*coroutines) + + return embeddings + + @retry(stop=stop_after_attempt(5)) + async def acreate_structured_output(self, text_input: str, system_prompt: str, + response_model: Type[BaseModel]) -> BaseModel: + """Generate a response from a user query.""" + return await self.aclient.chat.completions.create( + model=self.model, + messages=[ + { + "role": "user", + "content": f"""Use the given format to + extract information from the following input: {text_input}. """, + }, + {"role": "system", "content": system_prompt}, + ], + response_model=response_model, + ) + + def show_prompt(self, text_input: str, system_prompt: str) -> str: + """Format and display the prompt for a user query.""" + if not text_input: + text_input = "No user input provided." + if not system_prompt: + raise ValueError("No system prompt path provided.") + system_prompt = read_query_prompt(system_prompt) + + formatted_prompt = f"""System Prompt:\n{system_prompt}\n\nUser Input:\n{text_input}\n""" if system_prompt else None + return formatted_prompt diff --git a/poetry.lock b/poetry.lock index 03a5f0875..17e1e8ade 100644 --- a/poetry.lock +++ b/poetry.lock @@ -11,6 +11,116 @@ files = [ {file = "aiofiles-23.2.1.tar.gz", hash = "sha256:84ec2218d8419404abcb9f0c02df3f34c6e0a68ed41072acfb1cef5cbc29051a"}, ] +[[package]] +name = "aiohttp" +version = "3.9.3" +description = "Async http client/server framework (asyncio)" +optional = false +python-versions = ">=3.8" +files = [ + {file = 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-[package.dependencies] -authlib = ">=1.2.1,<2.0.0" -grpcio = ">=1.57.0,<2.0.0" -grpcio-health-checking = ">=1.57.0,<2.0.0" -grpcio-tools = ">=1.57.0,<2.0.0" -httpx = "0.27.0" -pydantic = ">=2.5.0,<3.0.0" -requests = ">=2.30.0,<3.0.0" -validators = "0.22.0" - [[package]] name = "webcolors" version = "1.13" @@ -8078,13 +7811,14 @@ notebook = ["overrides"] parquet = ["pyarrow"] pinecone = [] postgres = [] +qdrant = [] redshift = [] s3 = [] snowflake = [] synapse = ["pyarrow"] -weaviate = ["weaviate-client"] +weaviate = [] [metadata] lock-version = "2.0" python-versions = "~3.10" -content-hash = "18777e0fbbdfe0209697a413bac00979a351fa841c1352453a3f6150a70a746a" +content-hash = "987b6dc03c78f804e9a43c15093a2c307092e932235d15bbab26120c5ff446c5" From 4842443206acbc771974591033d467166af0a3ef Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Tue, 26 Mar 2024 14:21:30 +0100 Subject: [PATCH 03/13] Ollama fixes, missing libs + config fixes --- cognee/config.py | 2 +- cognee/infrastructure/llm/get_llm_client.py | 4 + .../modules/cognify/llm/classify_content.py | 12 +- poetry.lock | 311 ++++++++++++++++-- pyproject.toml | 2 + 5 files changed, 303 insertions(+), 28 deletions(-) diff --git a/cognee/config.py b/cognee/config.py index e5e92dc83..2cee90c99 100644 --- a/cognee/config.py +++ b/cognee/config.py @@ -46,7 +46,7 @@ class Config: llm_provider: str = "ollama" ollama_endpoint: str = "http://localhost:11434/v1" ollama_key: Optional[str] = os.getenv("OLLAMA_API_KEY") - ollama_model: str = "gpt-3.5-turbo" + ollama_model: str = "llama2" model: str = "gpt-4-0125-preview" # model: str = "gpt-3.5-turbo" model_endpoint: str = "openai" diff --git a/cognee/infrastructure/llm/get_llm_client.py b/cognee/infrastructure/llm/get_llm_client.py index d6ac1cb08..040235215 100644 --- a/cognee/infrastructure/llm/get_llm_client.py +++ b/cognee/infrastructure/llm/get_llm_client.py @@ -3,6 +3,8 @@ from cognee.config import Config from .openai.adapter import OpenAIAdapter from .ollama.adapter import OllamaAPIAdapter +import logging +logging.basicConfig(level=logging.INFO) # Define an Enum for LLM Providers class LLMProvider(Enum): @@ -17,8 +19,10 @@ def get_llm_client(): provider = LLMProvider(config.llm_provider) if provider == LLMProvider.OPENAI: + print("Using OpenAI API") return OpenAIAdapter(config.openai_key, config.model) elif provider == LLMProvider.OLLAMA: + print("Using Ollama API") return OllamaAPIAdapter(config.ollama_endpoint, config.ollama_key, config.ollama_model) else: raise ValueError(f"Unsupported LLM provider: {provider}") diff --git a/cognee/modules/cognify/llm/classify_content.py b/cognee/modules/cognify/llm/classify_content.py index a73e03b5b..c29e014ab 100644 --- a/cognee/modules/cognify/llm/classify_content.py +++ b/cognee/modules/cognify/llm/classify_content.py @@ -3,6 +3,8 @@ from pydantic import BaseModel from cognee.infrastructure.llm.prompts import read_query_prompt from cognee.infrastructure.llm.get_llm_client import get_llm_client +from cognee.shared.data_models import DefaultContentPrediction + async def classify_into_categories(text_input: str, system_prompt_file: str, response_model: Type[BaseModel]): llm_client = get_llm_client() @@ -31,10 +33,10 @@ def extract_categories(llm_output) -> List[dict]: "layer_name": layer_name # llm layer classification }] -# if __name__ == "__main__": -# import asyncio -# asyncio.run(classify_into_categories("""Russia summons US ambassador in Moscow and says it will expel diplomats who meddle in its internal affairs -# The Russian foreign ministry said on Thursday it had summoned the US ambassador in Moscow and warned her against “attempts to interfere in the internal affairs of the Russian Federation”, reports Reuters. +if __name__ == "__main__": + import asyncio + asyncio.run(classify_into_categories("""Russia summons US ambassador in Moscow and says it will expel diplomats who meddle in its internal affairs +The Russian foreign ministry said on Thursday it had summoned the US ambassador in Moscow and warned her against “attempts to interfere in the internal affairs of the Russian Federation”, reports Reuters. -# Ahead of a March presidential election, it said in a statement that such behaviour would be “firmly and resolutely suppressed, up to and including the expulsion as ‘persona non grata’ of US embassy staff involved in such actions”.""", "classify_content.txt", ContentPrediction)) +Ahead of a March presidential election, it said in a statement that such behaviour would be “firmly and resolutely suppressed, up to and including the expulsion as ‘persona non grata’ of US embassy staff involved in such actions”.""", "classify_content.txt", DefaultContentPrediction)) diff --git a/poetry.lock b/poetry.lock index 68aee2f04..8237350f8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -413,6 +413,20 @@ tests = ["attrs[tests-no-zope]", "zope-interface"] tests-mypy = ["mypy (>=1.6)", 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+ [[package]] name = "watchdog" version = "4.0.0" @@ -7505,6 +7751,27 @@ files = [ {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, ] +[[package]] +name = "weaviate-client" +version = "4.5.4" +description = "A python native Weaviate client" +optional = false +python-versions = ">=3.8" +files = [ + {file = "weaviate-client-4.5.4.tar.gz", hash = "sha256:fc53dc73cd53df453c5e6dc758e49a6a1549212d6670ddd013392107120692f8"}, + {file = "weaviate_client-4.5.4-py3-none-any.whl", hash = "sha256:f6d3a6b759e5aa0d3350067490526ea38b9274ae4043b4a3ae0064c28d56883f"}, +] + +[package.dependencies] +authlib = ">=1.2.1,<2.0.0" +grpcio = ">=1.57.0,<2.0.0" +grpcio-health-checking = ">=1.57.0,<2.0.0" +grpcio-tools = ">=1.57.0,<2.0.0" +httpx = "0.27.0" +pydantic = ">=2.5.0,<3.0.0" +requests = ">=2.30.0,<3.0.0" +validators = "0.22.0" + [[package]] name = "webcolors" version = "1.13" @@ -7811,14 +8078,14 @@ notebook = ["overrides"] parquet = ["pyarrow"] pinecone = [] postgres = [] -qdrant = [] +qdrant = ["qdrant-client"] redshift = [] s3 = [] snowflake = [] synapse = ["pyarrow"] -weaviate = [] +weaviate = ["weaviate-client"] [metadata] lock-version = "2.0" python-versions = "~3.10" -content-hash = "987b6dc03c78f804e9a43c15093a2c307092e932235d15bbab26120c5ff446c5" +content-hash = "ed9405a23d29448a4d4d9a01d7c642d0c4e48334d5b236eb8ec89dd694b15a9d" diff --git a/pyproject.toml b/pyproject.toml index 53b1f8652..02e1799a9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,6 +49,8 @@ aiofiles = "^23.2.1" duckdb-engine = "^0.11.2" graphistry = "^0.33.5" tenacity = "^8.2.3" +weaviate-client = "^4.5.4" +qdrant-client = "^1.8.0" [tool.poetry.extras] dbt = ["dbt-core", "dbt-redshift", "dbt-bigquery", "dbt-duckdb", "dbt-snowflake", "dbt-athena-community", "dbt-databricks"] From 9c06e293b2bc236371308defd2cbaac447e840f1 Mon Sep 17 00:00:00 2001 From: Boris Arzentar Date: Tue, 26 Mar 2024 14:43:26 +0100 Subject: [PATCH 04/13] feat: add EmbeddingEngine and use local embedding model --- cognee/api/v1/add/add.py | 4 +- cognee/api/v1/cognify/cognify.py | 11 +- cognee/infrastructure/InfrastructureConfig.py | 4 +- .../databases/vector/__init__.py | 1 + .../embeddings/DefaultEmbeddingEngine.py | 13 + .../vector/embeddings/EmbeddingEngine.py | 8 + .../databases/vector/qdrant/QDrantAdapter.py | 72 +-- .../databases/vector/vector_db_interface.py | 9 +- .../vector/weaviate_db/WeaviateAdapter.py | 54 +- cognee/modules/cognify/llm/label_content.py | 4 +- .../modules/cognify/llm/summarize_content.py | 4 +- notebooks/Demo_graph.ipynb | 15 +- notebooks/full_run.ipynb | 47 ++ notebooks/vector_retrieval_demo.ipynb | 525 ------------------ poetry.lock | 39 +- pyproject.toml | 3 +- 16 files changed, 191 insertions(+), 622 deletions(-) create mode 100644 cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py create mode 100644 cognee/infrastructure/databases/vector/embeddings/EmbeddingEngine.py create mode 100644 notebooks/full_run.ipynb delete mode 100644 notebooks/vector_retrieval_demo.ipynb diff --git a/cognee/api/v1/add/add.py b/cognee/api/v1/add/add.py index 41b2f24af..144c8f6fe 100644 --- a/cognee/api/v1/add/add.py +++ b/cognee/api/v1/add/add.py @@ -23,7 +23,7 @@ def list_dir_files(root_dir_path: str, parent_dir: str = "root"): nested_datasets = list_dir_files(path.join(root_dir_path, file_or_dir), dataset_name) - for dataset in nested_datasets: + for dataset in nested_datasets.keys(): datasets[dataset] = nested_datasets[dataset] else: if parent_dir not in datasets: @@ -37,7 +37,7 @@ def list_dir_files(root_dir_path: str, parent_dir: str = "root"): results = [] - for key in datasets: + for key in datasets.keys(): if dataset_name is not None and not key.startswith(dataset_name): continue diff --git a/cognee/api/v1/cognify/cognify.py b/cognee/api/v1/cognify/cognify.py index 18361f155..f6b968490 100644 --- a/cognee/api/v1/cognify/cognify.py +++ b/cognee/api/v1/cognify/cognify.py @@ -27,7 +27,6 @@ from cognee.infrastructure.databases.relational import DuckDBAdapter from cognee.modules.cognify.graph.add_document_node import add_document_node from cognee.modules.cognify.graph.initialize_graph import initialize_graph -from cognee.infrastructure.databases.vector import CollectionConfig, VectorConfig from cognee.infrastructure import infrastructure_config config = Config() @@ -159,18 +158,11 @@ async def generate_graph_per_layer(text_input: str, layers: List[str], response_ unique_layers = nodes_by_layer.keys() - collection_config = CollectionConfig( - vector_config = VectorConfig( - distance = "Cosine", - size = 3072 - ) - ) - try: db_engine = infrastructure_config.get_config()["vector_engine"] for layer in unique_layers: - await db_engine.create_collection(layer, collection_config) + await db_engine.create_collection(layer) except Exception as e: print(e) @@ -178,7 +170,6 @@ async def generate_graph_per_layer(text_input: str, layers: List[str], response_ results = await resolve_cross_graph_references(nodes_by_layer) - relationships = graph_ready_output(results) # print(relationships) await graph_client.load_graph_from_file() diff --git a/cognee/infrastructure/InfrastructureConfig.py b/cognee/infrastructure/InfrastructureConfig.py index b8a67c8aa..9ad858519 100644 --- a/cognee/infrastructure/InfrastructureConfig.py +++ b/cognee/infrastructure/InfrastructureConfig.py @@ -1,6 +1,6 @@ from cognee.config import Config from .databases.relational import SqliteEngine, DatabaseEngine -from .databases.vector import WeaviateAdapter, VectorDBInterface +from .databases.vector import WeaviateAdapter, VectorDBInterface, DefaultEmbeddingEngine config = Config() config.load() @@ -17,7 +17,7 @@ def get_config(self) -> dict: self.vector_engine = WeaviateAdapter( config.weaviate_url, config.weaviate_api_key, - config.openai_key + embedding_engine = DefaultEmbeddingEngine() ) return { diff --git a/cognee/infrastructure/databases/vector/__init__.py b/cognee/infrastructure/databases/vector/__init__.py index fe99e9afa..68dc309b7 100644 --- a/cognee/infrastructure/databases/vector/__init__.py +++ b/cognee/infrastructure/databases/vector/__init__.py @@ -5,3 +5,4 @@ from .models.CollectionConfig import CollectionConfig from .weaviate_db import WeaviateAdapter from .vector_db_interface import VectorDBInterface +from .embeddings.DefaultEmbeddingEngine import DefaultEmbeddingEngine diff --git a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py new file mode 100644 index 000000000..e5bc3be9d --- /dev/null +++ b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py @@ -0,0 +1,13 @@ +from typing import List +from fastembed.embedding import FlagEmbedding +from .EmbeddingEngine import EmbeddingEngine + +class DefaultEmbeddingEngine(EmbeddingEngine): + async def embed_text(self, text: List[str]) -> List[float]: + embedding_model = FlagEmbedding(model_name = "BAAI/bge-large-en-v1.5") + embeddings_list = list(map(lambda embedding: embedding.tolist(), embedding_model.embed(text))) + + return embeddings_list + + def get_vector_size(self) -> int: + return 1024 diff --git a/cognee/infrastructure/databases/vector/embeddings/EmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/EmbeddingEngine.py new file mode 100644 index 000000000..f28ff4115 --- /dev/null +++ b/cognee/infrastructure/databases/vector/embeddings/EmbeddingEngine.py @@ -0,0 +1,8 @@ +from typing import List, Protocol + +class EmbeddingEngine(Protocol): + async def embed_text(self, text: str) -> List[float]: + raise NotImplementedError() + + def get_vector_size(self) -> int: + raise NotImplementedError() diff --git a/cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py b/cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py index 847e96536..718ff23fe 100644 --- a/cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py +++ b/cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py @@ -1,12 +1,10 @@ import asyncio -from typing import List, Dict -# from pydantic import BaseModel, Field +from typing import List, Dict, Optional from qdrant_client import AsyncQdrantClient, models from ..vector_db_interface import VectorDBInterface from ..models.DataPoint import DataPoint -from ..models.VectorConfig import VectorConfig from ..models.CollectionConfig import CollectionConfig -from cognee.infrastructure.llm.get_llm_client import get_llm_client +from ..embeddings.EmbeddingEngine import EmbeddingEngine # class CollectionConfig(BaseModel, extra = "forbid"): # vector_config: Dict[str, models.VectorParams] = Field(..., description="Vectors configuration" ) @@ -14,26 +12,6 @@ # optimizers_config: Optional[models.OptimizersConfig] = Field(default = None, description="Optimizers configuration") # quantization_config: Optional[models.QuantizationConfig] = Field(default = None, description="Quantization configuration") -async def embed_data(data: str): - llm_client = get_llm_client() - - return await llm_client.async_get_embedding_with_backoff(data) - -async def convert_to_qdrant_point(data_point: DataPoint): - return models.PointStruct( - id = data_point.id, - payload = data_point.payload, - vector = { - "text": await embed_data(data_point.get_embeddable_data()) - } - ) - -def create_vector_config(vector_config: VectorConfig): - return models.VectorParams( - size = vector_config.size, - distance = vector_config.distance - ) - def create_hnsw_config(hnsw_config: Dict): if hnsw_config is not None: return models.HnswConfig() @@ -54,7 +32,9 @@ class QDrantAdapter(VectorDBInterface): qdrant_path: str = None qdrant_api_key: str = None - def __init__(self, qdrant_path, qdrant_url, qdrant_api_key): + def __init__(self, qdrant_path, qdrant_url, qdrant_api_key, embedding_engine: EmbeddingEngine): + self.embedding_engine = embedding_engine + if qdrant_path is not None: self.qdrant_path = qdrant_path else: @@ -77,17 +57,22 @@ def get_qdrant_client(self) -> AsyncQdrantClient: location = ":memory:" ) + async def embed_data(self, data: List[str]) -> List[float]: + return await self.embedding_engine.embed_text(data) + async def create_collection( self, collection_name: str, - collection_config: CollectionConfig, ): client = self.get_qdrant_client() return await client.create_collection( collection_name = collection_name, vectors_config = { - "text": create_vector_config(collection_config.vector_config) + "text": models.VectorParams( + size = self.embedding_engine.get_vector_size(), + distance = "Cosine" + ) } ) @@ -96,6 +81,17 @@ async def create_data_points(self, collection_name: str, data_points: List[DataP awaitables = [] + data_vectors = await self.embed_data(list(map(lambda data_point: data_point.get_embeddable_data(), data_points))) + + async def convert_to_qdrant_point(data_point: DataPoint): + return models.PointStruct( + id = data_point.id, + payload = data_point.payload, + vector = { + "text": data_vectors[data_points.index(data_point)] + } + ) + for point in data_points: awaitables.append(convert_to_qdrant_point(point)) @@ -106,21 +102,31 @@ async def create_data_points(self, collection_name: str, data_points: List[DataP points = points ) - async def search(self, collection_name: str, query_text: str, limit: int, with_vector: bool = False): + async def search( + self, + collection_name: str, + query_text: Optional[str] = None, + query_vector: Optional[List[float]] = None, + limit: int = None, + with_vector: bool = False + ): + if query_text is None and query_vector is None: + raise ValueError("One of query_text or query_vector must be provided!") + client = self.get_qdrant_client() return await client.search( collection_name = collection_name, query_vector = models.NamedVector( name = "text", - vector = await embed_data(query_text) + vector = query_vector if query_vector is not None else (await self.embed_data([query_text]))[0], ), limit = limit, with_vectors = with_vector ) - async def batch_search(self, collection_name: str, query_texts: List[str], limit: int, with_vectors: bool = False): + async def batch_search(self, collection_name: str, query_texts: List[str], limit: int = None, with_vectors: bool = False): """ Perform batch search in a Qdrant collection with dynamic search requests. @@ -134,9 +140,7 @@ async def batch_search(self, collection_name: str, query_texts: List[str], limit - results: The search results from Qdrant. """ - client = self.get_qdrant_client() - - vectors = await asyncio.gather(*[embed_data(query_text) for query_text in query_texts]) + vectors = await self.embed_data(query_texts) # Generate dynamic search requests based on the provided embeddings requests = [ @@ -150,6 +154,8 @@ async def batch_search(self, collection_name: str, query_texts: List[str], limit ) for vector in vectors ] + client = self.get_qdrant_client() + # Perform batch search with the dynamically generated requests results = await client.search_batch( collection_name = collection_name, diff --git a/cognee/infrastructure/databases/vector/vector_db_interface.py b/cognee/infrastructure/databases/vector/vector_db_interface.py index 9bd124649..53fa1aab9 100644 --- a/cognee/infrastructure/databases/vector/vector_db_interface.py +++ b/cognee/infrastructure/databases/vector/vector_db_interface.py @@ -1,6 +1,5 @@ -from typing import List, Protocol +from typing import List, Protocol, Optional from abc import abstractmethod -from .models.CollectionConfig import CollectionConfig from .models.DataPoint import DataPoint class VectorDBInterface(Protocol): @@ -8,8 +7,7 @@ class VectorDBInterface(Protocol): @abstractmethod async def create_collection( self, - collection_name: str, - collection_config: CollectionConfig + collection_name: str ): raise NotImplementedError # @abstractmethod @@ -74,7 +72,8 @@ async def create_data_points( async def search( self, collection_name: str, - query_text: str, + query_text: Optional[str], + query_vector: Optional[List[float]], limit: int, with_vector: bool = False diff --git a/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py b/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py index e7b2ce0d4..a299aac8a 100644 --- a/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py +++ b/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py @@ -1,4 +1,4 @@ -from typing import List +from typing import List, Optional from multiprocessing import Pool import weaviate import weaviate.classes as wvc @@ -7,29 +7,35 @@ from ..vector_db_interface import VectorDBInterface from ..models.DataPoint import DataPoint from ..models.ScoredResult import ScoredResult +from ..embeddings.EmbeddingEngine import EmbeddingEngine class WeaviateAdapter(VectorDBInterface): async_pool: Pool = None + embedding_engine: EmbeddingEngine = None + + def __init__(self, url: str, api_key: str, embedding_engine: EmbeddingEngine): + self.embedding_engine = embedding_engine - def __init__(self, url: str, api_key: str, openai_api_key: str): self.client = weaviate.connect_to_wcs( cluster_url = url, auth_credentials = weaviate.auth.AuthApiKey(api_key), - headers = { - "X-OpenAI-Api-Key": openai_api_key - }, - additional_config = wvc.init.AdditionalConfig(timeou = wvc.init.Timeout(init = 30)) + # headers = { + # "X-OpenAI-Api-Key": openai_api_key + # }, + additional_config = wvc.init.AdditionalConfig(timeout = wvc.init.Timeout(init = 30)) ) - async def create_collection(self, collection_name: str, collection_config: dict): + async def embed_data(self, data: List[str]) -> List[float]: + return await self.embedding_engine.embed_text(data) + + async def create_collection(self, collection_name: str): return self.client.collections.create( name = collection_name, - vectorizer_config = wvcc.Configure.Vectorizer.text2vec_openai(), - generative_config = wvcc.Configure.Generative.openai(), properties = [ wvcc.Property( name = "text", - data_type = wvcc.DataType.TEXT + data_type = wvcc.DataType.TEXT, + skip_vectorization = True ) ] ) @@ -38,26 +44,38 @@ def get_collection(self, collection_name: str): return self.client.collections.get(collection_name) async def create_data_points(self, collection_name: str, data_points: List[DataPoint]): + data_vectors = await self.embed_data(list(map(lambda data_point: data_point.get_embeddable_data(), data_points))) + def convert_to_weaviate_data_points(data_point: DataPoint): return DataObject( uuid = data_point.id, - properties = data_point.payload + properties = data_point.payload, + vector = data_vectors[data_points.index(data_point)] ) objects = list(map(convert_to_weaviate_data_points, data_points)) return self.get_collection(collection_name).data.insert_many(objects) - async def search(self, collection_name: str, query_text: str, limit: int, with_vector: bool = False): + async def search( + self, + collection_name: str, + query_text: Optional[str] = None, + query_vector: Optional[List[float]] = None, + limit: int = None, + with_vector: bool = False + ): + if query_text is None and query_vector is None: + raise ValueError("One of query_text or query_vector must be provided!") + search_result = self.get_collection(collection_name).query.hybrid( - query = query_text, + query = None, + vector = query_vector if query_vector is not None else (await self.embed_data([query_text]))[0], limit = limit, include_vector = with_vector, return_metadata = wvc.query.MetadataQuery(score = True), ) - # print(search_result.objects) - return list(map(lambda result: ScoredResult( id = str(result.uuid), payload = result.properties, @@ -65,10 +83,10 @@ async def search(self, collection_name: str, query_text: str, limit: int, with_v ), search_result.objects)) async def batch_search(self, collection_name: str, query_texts: List[str], limit: int, with_vectors: bool = False): - def query_search(query_text): - return self.search(collection_name, query_text, limit = limit, with_vector = with_vectors) + def query_search(query_vector): + return self.search(collection_name, query_vector = query_vector, limit = limit, with_vector = with_vectors) - return [await query_search(query_text) for query_text in query_texts] + return [await query_search(query_vector) for query_vector in await self.embed_data(query_texts)] async def prune(self): self.client.collections.delete_all() diff --git a/cognee/modules/cognify/llm/label_content.py b/cognee/modules/cognify/llm/label_content.py index 5b194f5be..98f02f9c0 100644 --- a/cognee/modules/cognify/llm/label_content.py +++ b/cognee/modules/cognify/llm/label_content.py @@ -1,5 +1,5 @@ """ This module contains the code to classify content into categories using the LLM API. """ -from typing import Type, List +from typing import Type from pydantic import BaseModel from cognee.infrastructure.llm.prompts import read_query_prompt from cognee.infrastructure.llm.get_llm_client import get_llm_client @@ -11,4 +11,4 @@ async def label_content(text_input: str, system_prompt_file: str, response_model llm_output = await llm_client.acreate_structured_output(text_input, system_prompt, response_model) - return llm_output.dict() \ No newline at end of file + return llm_output.model_dump() diff --git a/cognee/modules/cognify/llm/summarize_content.py b/cognee/modules/cognify/llm/summarize_content.py index edd32b452..7969b545d 100644 --- a/cognee/modules/cognify/llm/summarize_content.py +++ b/cognee/modules/cognify/llm/summarize_content.py @@ -1,5 +1,5 @@ """ This module contains the code to classify content into categories using the LLM API. """ -from typing import Type, List +from typing import Type from pydantic import BaseModel from cognee.infrastructure.llm.prompts import read_query_prompt from cognee.infrastructure.llm.get_llm_client import get_llm_client @@ -11,4 +11,4 @@ async def summarize_content(text_input: str, system_prompt_file: str, response_m llm_output = await llm_client.acreate_structured_output(text_input, system_prompt, response_model) - return llm_output.dict() \ No newline at end of file + return llm_output.model_dump() diff --git a/notebooks/Demo_graph.ipynb b/notebooks/Demo_graph.ipynb index 75378e7a1..220208703 100644 --- a/notebooks/Demo_graph.ipynb +++ b/notebooks/Demo_graph.ipynb @@ -1496,16 +1496,7 @@ "outputs": [], "source": [ "\n", - "unique_layer_uuids = set(node['layer_decomposition_uuid'] for node in node_descriptions)\n", - "collection_config = CollectionConfig(\n", - " vector_config={\n", - " 'content': models.VectorParams(\n", - " distance=models.Distance.COSINE,\n", - " size=3072\n", - " )\n", - " },\n", - " # Set other configs as needed\n", - ")" + "unique_layer_uuids = set(node['layer_decomposition_uuid'] for node in node_descriptions)" ] }, { @@ -1515,7 +1506,7 @@ "metadata": {}, "outputs": [], "source": [ - "# await db.create_collection(\"blabla\",collection_config)" + "# await db.create_collection(\"blabla\")" ] }, { @@ -1526,7 +1517,7 @@ "outputs": [], "source": [ "for layer in unique_layer_uuids:\n", - " await db.create_collection(layer,collection_config)" + " await db.create_collection(layer)" ] }, { diff --git a/notebooks/full_run.ipynb b/notebooks/full_run.ipynb new file mode 100644 index 000000000..4541db14a --- /dev/null +++ b/notebooks/full_run.ipynb @@ -0,0 +1,47 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": null, + "id": "38135bf7", + "metadata": {}, + "outputs": [], + "source": [ + "from cognee import add, cognify, search\n", + "from cognee.utils import render_graph\n", + "from os import listdir, path\n", + "\n", + "data_path = path.abspath(\"../.data\")\n", + "\n", + "print(data_path)\n", + "\n", + "await add(path.abspath(\"../.data\"), \"izmene\")\n", + "\n", + "graph = await cognify(\"izmene\")\n", + "\n", + "await render_graph(graph, graph_type=\"networkx\")" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.13" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/notebooks/vector_retrieval_demo.ipynb b/notebooks/vector_retrieval_demo.ipynb deleted file mode 100644 index 2d8166b2d..000000000 --- a/notebooks/vector_retrieval_demo.ipynb +++ /dev/null @@ -1,525 +0,0 @@ -{ - "cells": [ - { - "cell_type": "code", - "execution_count": 1, - "id": "50d5afda-418f-436b-b467-004863193d4a", - "metadata": {}, - "outputs": [], - "source": [ - "articles = [\n", - "\"\"\"Edward VII (Albert Edward; 9 November 1841 – 6 May 1910) was King of the United Kingdom and the British Dominions, and Emperor of India, from 22 January 1901 until his death in 1910.\n", - "The second child and eldest son of Queen Victoria and Prince Albert of Saxe-Coburg and Gotha, Edward, nicknamed \"Bertie\", was related to royalty throughout Europe. He was Prince of Wales and heir apparent to the British throne for almost 60 years. During his mother's reign, he was largely excluded from political influence and came to personify the fashionable, leisured elite. He married Princess Alexandra of Denmark in 1863, and the couple had six children. As Prince of Wales, Edward travelled throughout Britain performing ceremonial public duties and represented Britain on visits abroad. His tours of North America in 1860 and of the Indian subcontinent in 1875 proved popular successes, but despite public approval, his reputation as a playboy prince soured his relationship with his mother.\n", - "Edward inherited the throne upon his mother's death in 1901. The King played a role in the modernisation of the British Home Fleet and the reorganisation of the British Army after the Second Boer War of 1899–1902. He re-instituted traditional ceremonies as public displays and broadened the range of people with whom royalty socialised. He fostered good relations between Britain and other European countries, especially France, for which he was popularly called \"Peacemaker\", but his relationship with his nephew, German Emperor Wilhelm II, was poor. The Edwardian era, which covered Edward's reign and was named after him, coincided with the start of a new century and heralded significant changes in technology and society, including steam turbine propulsion and the rise of socialism. He died in 1910 in the midst of a constitutional crisis that was resolved the following year by the Parliament Act 1911, which restricted the power of the unelected House of Lords. Edward was succeeded by his only surviving son, George V.\"\"\",\n", - " \"\"\"George V (George Frederick Ernest Albert; 3 June 1865 – 20 January 1936) was King of the United Kingdom and the British Dominions, and Emperor of India, from 6 May 1910 until his death in 1936.\n", - "George was born during the reign of his paternal grandmother, Queen Victoria, as the second son of the Prince and Princess of Wales (later King Edward VII and Queen Alexandra). He was third in the line of succession to the British throne behind his father and his elder brother, Prince Albert Victor. From 1877 to 1892, George served in the Royal Navy, until his elder brother's unexpected death in January 1892 put him directly in line for the throne. The next year, George married his brother's fiancée, Princess Victoria Mary of Teck, and they had six children. When Queen Victoria died in 1901, George's father ascended the throne as Edward VII, and George was created Prince of Wales. He became king-emperor on his father's death in 1910.\n", - "George's reign saw the rise of socialism, communism, fascism, Irish republicanism, and the Indian independence movement, all of which radically changed the political landscape of the British Empire, which itself reached its territorial peak by the beginning of the 1920s. The Parliament Act 1911 established the supremacy of the elected British House of Commons over the unelected House of Lords. As a result of the First World War (1914–1918), the empires of his first cousins Nicholas II of Russia and Wilhelm II of Germany fell, while the British Empire expanded to its greatest effective extent. In 1917, George became the first monarch of the House of Windsor, which he renamed from the House of Saxe-Coburg and Gotha as a result of anti-German public sentiment. He appointed the first Labour ministry in 1924, and the 1931 Statute of Westminster recognised the Empire's Dominions as separate, independent states within the British Commonwealth of Nations.\n", - "George suffered from smoking-related health problems during his later reign. On his death in January 1936, he was succeeded by his eldest son, Edward VIII. Edward abdicated in December of that year and was succeeded by his younger brother Albert, who took the regnal name George VI.\"\"\",\n", - "\"\"\"Edward VIII (Edward Albert Christian George Andrew Patrick David; 23 June 1894 – 28 May 1972), later known as the Duke of Windsor, was King of the United Kingdom and the Dominions of the British Empire, and Emperor of India, from 20 January 1936 until his abdication in December of the same year.[a]\n", - "Edward was born during the reign of his great-grandmother Queen Victoria as the eldest child of the Duke and Duchess of York, later King George V and Queen Mary. He was created Prince of Wales on his 16th birthday, seven weeks after his father succeeded as king. As a young man, Edward served in the British Army during the First World War and undertook several overseas tours on behalf of his father. The Prince of Wales gained popularity due to his charm and charisma, and his fashion sense became a hallmark of the era. After the war, his conduct began to give cause for concern; he engaged in a series of sexual affairs that worried both his father and the British prime minister, Stanley Baldwin.\n", - "Upon his father's death in 1936, Edward became the second monarch of the House of Windsor. The new king showed impatience with court protocol, and caused consternation among politicians by his apparent disregard for established constitutional conventions. Only months into his reign, a constitutional crisis was caused by his proposal to marry Wallis Simpson, an American who had divorced her first husband and was seeking a divorce from her second. The prime ministers of the United Kingdom and the Dominions opposed the marriage, arguing a divorced woman with two living ex-husbands was politically and socially unacceptable as a prospective queen consort. Additionally, such a marriage would have conflicted with Edward's status as titular head of the Church of England, which, at the time, disapproved of remarriage after divorce if a former spouse was still alive. Edward knew the Baldwin government would resign if the marriage went ahead, which could have forced a general election and would have ruined his status as a politically neutral constitutional monarch. When it became apparent he could not marry Simpson and remain on the throne, he abdicated. He was succeeded by his younger brother, George VI. With a reign of 326 days, Edward was one of the shortest-reigning British monarchs to date.\n", - "After his abdication, Edward was created Duke of Windsor. He married Simpson in France on 3 June 1937, after her second divorce became final. Later that year, the couple toured Nazi Germany, which fed rumours that he was a Nazi sympathiser. During the Second World War, Edward was at first stationed with the British Military Mission to France but after the fall of France was appointed Governor of the Bahamas. After the war, Edward spent the rest of his life in France. He and Wallis remained married until his death in 1972; they had no children.\"\"\",\n", - "\"\"\"George VI (Albert Frederick Arthur George; 14 December 1895 – 6 February 1952) was King of the United Kingdom and the Dominions of the British Commonwealth from 11 December 1936 until his death on 6 February 1952. He was also the last Emperor of India from 1936 until the British Raj was dissolved in August 1947, and the first head of the Commonwealth following the London Declaration of 1949.\n", - "The future George VI was born during the reign of his great-grandmother Queen Victoria; he was named Albert at birth after his great-grandfather Prince Albert of Saxe-Coburg and Gotha and was known as \"Bertie\" to his family and close friends. His father ascended the throne as George V in 1910. As the second son of the king, Albert was not expected to inherit the throne. He spent his early life in the shadow of his elder brother, Edward, the heir apparent. Albert attended naval college as a teenager and served in the Royal Navy and Royal Air Force during the First World War. In 1920, he was made Duke of York. He married Lady Elizabeth Bowes-Lyon in 1923, and they had two daughters, Elizabeth and Margaret. In the mid-1920s, he engaged speech therapist Lionel Logue to treat his stutter, which he learned to manage to some degree. His elder brother ascended the throne as Edward VIII after their father died in 1936, but Edward abdicated later that year to marry the twice-divorced American socialite Wallis Simpson. As heir presumptive to Edward VIII, Albert became king, taking the regnal name George VI.\n", - "In September 1939, the British Empire and most Commonwealth countries—but not Ireland—declared war on Nazi Germany, following the invasion of Poland. War with the Kingdom of Italy and the Empire of Japan followed in 1940 and 1941, respectively. George VI was seen as sharing the hardships of the common people and his popularity soared. Buckingham Palace was bombed during the Blitz while the King and Queen were there, and his younger brother the Duke of Kent was killed on active service. George became known as a symbol of British determination to win the war. Britain and its allies were victorious in 1945, but the British Empire declined. Ireland had largely broken away, followed by the independence of India and Pakistan in 1947. George relinquished the title of Emperor of India in June 1948 and instead adopted the new title of Head of the Commonwealth. He was beset by smoking-related health problems in the later years of his reign and died at Sandringham House, aged 56, of a coronary thrombosis in 1952. He was succeeded by his elder daughter, Elizabeth II.\"\"\",\n", - "\"\"\"Elizabeth II (Elizabeth Alexandra Mary; 21 April 1926 – 8 September 2022) was Queen of the United Kingdom and other Commonwealth realms from 6 February 1952 until her death in 2022. She was queen regnant of 32 sovereign states over the course of her lifetime and remained the monarch of 15 realms by the time of her death. Her reign of over 70 years is the longest of any British monarch, the longest of any female monarch, and the second longest verified reign of any monarch of a sovereign state in history.\n", - "Elizabeth was born in Mayfair, London, during the reign of her paternal grandfather, King George V. She was the first child of the Duke and Duchess of York (later King George VI and Queen Elizabeth The Queen Mother). Her father acceded to the throne in 1936 upon the abdication of his brother Edward VIII, making the ten-year-old Princess Elizabeth the heir presumptive. She was educated privately at home and began to undertake public duties during the Second World War, serving in the Auxiliary Territorial Service. In November 1947, she married Philip Mountbatten, a former prince of Greece and Denmark, and their marriage lasted 73 years until his death in 2021. They had four children: Charles, Anne, Andrew, and Edward.\n", - "When her father died in February 1952, Elizabeth—then 25 years old—became queen of seven independent Commonwealth countries: the United Kingdom, Canada, Australia, New Zealand, South Africa, Pakistan, and Ceylon (known today as Sri Lanka), as well as head of the Commonwealth. Elizabeth reigned as a constitutional monarch through major political changes such as the Troubles in Northern Ireland, devolution in the United Kingdom, the decolonisation of Africa, and the United Kingdom's accession to the European Communities, as well as its subsequent withdrawal. The number of her realms varied over time as territories gained independence and some realms became republics. As queen, Elizabeth was served by more than 170 prime ministers across her realms. Her many historic visits and meetings included state visits to China in 1986, to Russia in 1994, and to the Republic of Ireland in 2011, and meetings with five popes and fourteen US presidents.\n", - "Significant events included Elizabeth's coronation in 1953 and the celebrations of her Silver, Golden, Diamond, and Platinum jubilees in 1977, 2002, 2012, and 2022, respectively. Although she faced occasional republican sentiment and media criticism of her family—particularly after the breakdowns of her children's marriages, her annus horribilis in 1992, and the death in 1997 of her former daughter-in-law Diana—support for the monarchy in the United Kingdom remained consistently high throughout her lifetime, as did her personal popularity. Elizabeth died aged 96 at Balmoral Castle in September 2022, and was succeeded by her eldest son, Charles III.\"\"\"\n", - "]" - ] - }, - { - "cell_type": "code", - "execution_count": 2, - "id": "e328a903-d084-4d07-9b95-0a9196d7f719", - "metadata": {}, - "outputs": [], - "source": [ - "categories = {\n", - " \"Natural Language Text\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Articles, essays, and reports\",\n", - " \"Books and manuscripts\",\n", - " \"News stories and blog posts\",\n", - " \"Research papers and academic publications\",\n", - " \"Social media posts and comments\",\n", - " \"Website content and product descriptions\",\n", - " \"Personal narratives and stories\"\n", - " ]\n", - " },\n", - " \"Structured Documents\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Spreadsheets and tables\",\n", - " \"Forms and surveys\",\n", - " \"Databases and CSV files\"\n", - " ]\n", - " },\n", - " \"Code and Scripts\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Source code in various programming languages\",\n", - " \"Shell commands and scripts\",\n", - " \"Markup languages (HTML, XML)\",\n", - " \"Stylesheets (CSS) and configuration files (YAML, JSON, INI)\"\n", - " ]\n", - " },\n", - " \"Conversational Data\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Chat transcripts and messaging history\",\n", - " \"Customer service logs and interactions\",\n", - " \"Conversational AI training data\"\n", - " ]\n", - " },\n", - " \"Educational Content\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Textbook content and lecture notes\",\n", - " \"Exam questions and academic exercises\",\n", - " \"E-learning course materials\"\n", - " ]\n", - " },\n", - " \"Creative Writing\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Poetry and prose\",\n", - " \"Scripts for plays, movies, and television\",\n", - " \"Song lyrics\"\n", - " ]\n", - " },\n", - " \"Technical Documentation\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Manuals and user guides\",\n", - " \"Technical specifications and API documentation\",\n", - " \"Helpdesk articles and FAQs\"\n", - " ]\n", - " },\n", - " \"Legal and Regulatory Documents\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Contracts and agreements\",\n", - " \"Laws, regulations, and legal case documents\",\n", - " \"Policy documents and compliance materials\"\n", - " ]\n", - " },\n", - " \"Medical and Scientific Texts\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Clinical trial reports\",\n", - " \"Patient records and case notes\",\n", - " \"Scientific journal articles\"\n", - " ]\n", - " },\n", - " \"Financial and Business Documents\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Financial reports and statements\",\n", - " \"Business plans and proposals\",\n", - " \"Market research and analysis reports\"\n", - " ]\n", - " },\n", - " \"Advertising and Marketing Materials\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Ad copies and marketing slogans\",\n", - " \"Product catalogs and brochures\",\n", - " \"Press releases and promotional content\"\n", - " ]\n", - " },\n", - " \"Emails and Correspondence\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Professional and formal correspondence\",\n", - " \"Personal emails and letters\"\n", - " ]\n", - " },\n", - " \"Metadata and Annotations\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Image and video captions\",\n", - " \"Annotations and metadata for various media\"\n", - " ]\n", - " },\n", - " \"Language Learning Materials\": {\n", - " \"type\": \"TEXT\",\n", - " \"subclass\": [\n", - " \"Vocabulary lists and grammar rules\",\n", - " \"Language exercises and quizzes\"\n", - " ]\n", - " },\n", - " \"Audio Content\": {\n", - " \"type\": \"AUDIO\",\n", - " \"subclass\": [\n", - " \"Music tracks and albums\",\n", - " \"Podcasts and radio broadcasts\",\n", - " \"Audiobooks and audio guides\",\n", - " \"Recorded interviews and speeches\",\n", - " \"Sound effects and ambient sounds\"\n", - " ]\n", - " },\n", - " \"Image Content\": {\n", - " \"type\": \"IMAGE\",\n", - " \"subclass\": [\n", - " \"Photographs and digital images\",\n", - " \"Illustrations, diagrams, and charts\",\n", - " \"Infographics and visual data representations\",\n", - " \"Artwork and paintings\",\n", - " \"Screenshots and graphical user interfaces\"\n", - " ]\n", - " },\n", - " \"Video Content\": {\n", - " \"type\": \"VIDEO\",\n", - " \"subclass\": [\n", - " \"Movies and short films\",\n", - " \"Documentaries and educational videos\",\n", - " \"Video tutorials and how-to guides\",\n", - " \"Animated features and cartoons\",\n", - " \"Live event recordings and sports broadcasts\"\n", - " ]\n", - " },\n", - " \"Multimedia Content\": {\n", - " \"type\": \"MULTIMEDIA\",\n", - " \"subclass\": [\n", - " \"Interactive web content and games\",\n", - " \"Virtual reality (VR) and augmented reality (AR) experiences\",\n", - " \"Mixed media presentations and slide decks\",\n", - " \"E-learning modules with integrated multimedia\",\n", - " \"Digital exhibitions and virtual tours\"\n", - " ]\n", - " },\n", - " \"3D Models and CAD Content\": {\n", - " \"type\": \"3D_MODEL\",\n", - " \"subclass\": [\n", - " \"Architectural renderings and building plans\",\n", - " \"Product design models and prototypes\",\n", - " \"3D animations and character models\",\n", - " \"Scientific simulations and visualizations\",\n", - " \"Virtual objects for AR/VR environments\"\n", - " ]\n", - " },\n", - " \"Procedural Content\": {\n", - " \"type\": \"PROCEDURAL\",\n", - " \"subclass\": [\n", - " \"Tutorials and step-by-step guides\",\n", - " \"Workflow and process descriptions\",\n", - " \"Simulation and training exercises\",\n", - " \"Recipes and crafting instructions\"\n", - " ]\n", - " }\n", - "}" - ] - }, - { - "cell_type": "code", - "execution_count": 3, - "id": "89a3f3a0", - "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/Users/borisarzentar/Projects/Topoteretes/cognee/.venv/lib/python3.12/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n", - " from .autonotebook import tqdm as notebook_tqdm\n", - "\u001b[32m2024-03-02 11:50:12.400\u001b[0m | \u001b[33m\u001b[1mWARNING \u001b[0m | \u001b[36mfastembed.embedding\u001b[0m:\u001b[36m\u001b[0m:\u001b[36m7\u001b[0m - \u001b[33m\u001b[1mDefaultEmbedding, FlagEmbedding, JinaEmbedding are deprecated.Use from fastembed import TextEmbedding instead.\u001b[0m\n" - ] - } - ], - "source": [ - "import uuid\n", - "from os import path\n", - "from qdrant_client.models import PointStruct, Distance\n", - "from cognee.root_dir import ROOT_DIR\n", - "from fastembed import TextEmbedding\n", - "# from cognee.openai_tools import get_embedding_with_backoff\n", - "from cognee.infrastructure.databases.vector import QDrantAdapter, CollectionConfig" - ] - }, - { - "cell_type": "code", - "execution_count": 5, - "id": "659e327e", - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "True\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "Fetching 9 files: 0%| | 0/9 [00:00 39\u001b[0m \u001b[38;5;28;01mawait\u001b[39;00m run()\n", - "Cell \u001b[0;32mIn[5], line 36\u001b[0m, in \u001b[0;36mrun\u001b[0;34m()\u001b[0m\n\u001b[1;32m 28\u001b[0m result \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mawait\u001b[39;00m qdrant_client\u001b[38;5;241m.\u001b[39mcreate_collection(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mtest_collection\u001b[39m\u001b[38;5;124m\"\u001b[39m, CollectionConfig(\n\u001b[1;32m 29\u001b[0m vector_config \u001b[38;5;241m=\u001b[39m {\n\u001b[1;32m 30\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124msize\u001b[39m\u001b[38;5;124m\"\u001b[39m: \u001b[38;5;241m1536\u001b[39m,\n\u001b[1;32m 31\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mdistance\u001b[39m\u001b[38;5;124m\"\u001b[39m: Distance\u001b[38;5;241m.\u001b[39mDOT\n\u001b[1;32m 32\u001b[0m }\n\u001b[1;32m 33\u001b[0m ))\n\u001b[1;32m 34\u001b[0m \u001b[38;5;28mprint\u001b[39m(result)\n\u001b[0;32m---> 36\u001b[0m result \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mawait\u001b[39;00m qdrant_client\u001b[38;5;241m.\u001b[39mcreate_data_points(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mtest_collection\u001b[39m\u001b[38;5;124m\"\u001b[39m, data_points)\n\u001b[1;32m 37\u001b[0m \u001b[38;5;28mprint\u001b[39m(result)\n", - "File \u001b[0;32m~/Projects/Topoteretes/cognee/cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py:58\u001b[0m, in \u001b[0;36mQDrantAdapter.create_data_points\u001b[0;34m(self, collection_name, data_points)\u001b[0m\n\u001b[1;32m 55\u001b[0m \u001b[38;5;28;01masync\u001b[39;00m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mcreate_data_points\u001b[39m(\u001b[38;5;28mself\u001b[39m, collection_name: \u001b[38;5;28mstr\u001b[39m, data_points: List[\u001b[38;5;28many\u001b[39m]):\n\u001b[1;32m 56\u001b[0m client \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mget_qdrant_client()\n\u001b[0;32m---> 58\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;01mawait\u001b[39;00m client\u001b[38;5;241m.\u001b[39mupload_points(\n\u001b[1;32m 59\u001b[0m collection_name \u001b[38;5;241m=\u001b[39m collection_name,\n\u001b[1;32m 60\u001b[0m points \u001b[38;5;241m=\u001b[39m data_points\n\u001b[1;32m 61\u001b[0m )\n", - "File \u001b[0;32m~/Projects/Topoteretes/cognee/.venv/lib/python3.12/site-packages/qdrant_client/async_qdrant_client.py:1800\u001b[0m, in \u001b[0;36mAsyncQdrantClient.upload_points\u001b[0;34m(self, collection_name, points, batch_size, parallel, method, max_retries, wait, shard_key_selector, **kwargs)\u001b[0m\n\u001b[1;32m 1776\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Upload points to the collection\u001b[39;00m\n\u001b[1;32m 1777\u001b[0m \n\u001b[1;32m 1778\u001b[0m \u001b[38;5;124;03mSimilar to `upload_collection` method, but operates with points, rather than vector and payload individually.\u001b[39;00m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1797\u001b[0m \n\u001b[1;32m 1798\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 1799\u001b[0m \u001b[38;5;28;01massert\u001b[39;00m \u001b[38;5;28mlen\u001b[39m(kwargs) \u001b[38;5;241m==\u001b[39m \u001b[38;5;241m0\u001b[39m, \u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mUnknown arguments: \u001b[39m\u001b[38;5;132;01m{\u001b[39;00m\u001b[38;5;28mlist\u001b[39m(kwargs\u001b[38;5;241m.\u001b[39mkeys())\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m-> 1800\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;01mawait\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_client\u001b[38;5;241m.\u001b[39mupload_points(\n\u001b[1;32m 1801\u001b[0m collection_name\u001b[38;5;241m=\u001b[39mcollection_name,\n\u001b[1;32m 1802\u001b[0m points\u001b[38;5;241m=\u001b[39mpoints,\n\u001b[1;32m 1803\u001b[0m batch_size\u001b[38;5;241m=\u001b[39mbatch_size,\n\u001b[1;32m 1804\u001b[0m parallel\u001b[38;5;241m=\u001b[39mparallel,\n\u001b[1;32m 1805\u001b[0m method\u001b[38;5;241m=\u001b[39mmethod,\n\u001b[1;32m 1806\u001b[0m max_retries\u001b[38;5;241m=\u001b[39mmax_retries,\n\u001b[1;32m 1807\u001b[0m wait\u001b[38;5;241m=\u001b[39mwait,\n\u001b[1;32m 1808\u001b[0m shard_key_selector\u001b[38;5;241m=\u001b[39mshard_key_selector,\n\u001b[1;32m 1809\u001b[0m )\n", - "File \u001b[0;32m~/Projects/Topoteretes/cognee/.venv/lib/python3.12/site-packages/qdrant_client/local/async_qdrant_local.py:661\u001b[0m, in \u001b[0;36mAsyncQdrantLocal.upload_points\u001b[0;34m(self, collection_name, points, **kwargs)\u001b[0m\n\u001b[1;32m 658\u001b[0m \u001b[38;5;28;01masync\u001b[39;00m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mupload_points\u001b[39m(\n\u001b[1;32m 659\u001b[0m \u001b[38;5;28mself\u001b[39m, collection_name: \u001b[38;5;28mstr\u001b[39m, points: Iterable[types\u001b[38;5;241m.\u001b[39mPointStruct], \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs: Any\n\u001b[1;32m 660\u001b[0m ) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[0;32m--> 661\u001b[0m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_upload_points\u001b[49m\u001b[43m(\u001b[49m\u001b[43mcollection_name\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mpoints\u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/Projects/Topoteretes/cognee/.venv/lib/python3.12/site-packages/qdrant_client/local/async_qdrant_local.py:673\u001b[0m, in \u001b[0;36mAsyncQdrantLocal._upload_points\u001b[0;34m(self, collection_name, points)\u001b[0m\n\u001b[1;32m 668\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21m_upload_points\u001b[39m(\n\u001b[1;32m 669\u001b[0m \u001b[38;5;28mself\u001b[39m, collection_name: \u001b[38;5;28mstr\u001b[39m, points: Iterable[Union[types\u001b[38;5;241m.\u001b[39mPointStruct, types\u001b[38;5;241m.\u001b[39mRecord]]\n\u001b[1;32m 670\u001b[0m ) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 671\u001b[0m collection \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_get_collection(collection_name)\n\u001b[1;32m 672\u001b[0m collection\u001b[38;5;241m.\u001b[39mupsert(\n\u001b[0;32m--> 673\u001b[0m \u001b[43m[\u001b[49m\n\u001b[1;32m 674\u001b[0m \u001b[43m \u001b[49m\u001b[43mrest_models\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mPointStruct\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 675\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mid\u001b[39;49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mpoint\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mid\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mvector\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mpoint\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mvector\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;129;43;01mor\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43m{\u001b[49m\u001b[43m}\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mpayload\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mpoint\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mpayload\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;129;43;01mor\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43m{\u001b[49m\u001b[43m}\u001b[49m\n\u001b[1;32m 676\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 677\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43;01mfor\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43mpoint\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;129;43;01min\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43mpoints\u001b[49m\n\u001b[1;32m 678\u001b[0m \u001b[43m \u001b[49m\u001b[43m]\u001b[49m\n\u001b[1;32m 679\u001b[0m )\n", - "Cell \u001b[0;32mIn[5], line 17\u001b[0m, in \u001b[0;36mcreate_data_point\u001b[0;34m(data)\u001b[0m\n\u001b[1;32m 16\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mcreate_data_point\u001b[39m(data: \u001b[38;5;28mstr\u001b[39m) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m PointStruct:\n\u001b[0;32m---> 17\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mPointStruct\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 18\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mid\u001b[39;49m\u001b[43m \u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43m \u001b[49m\u001b[38;5;28;43mstr\u001b[39;49m\u001b[43m(\u001b[49m\u001b[43muuid\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43muuid4\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 19\u001b[0m \u001b[43m \u001b[49m\u001b[43mvector\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43m \u001b[49m\u001b[43membed_data\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 20\u001b[0m \u001b[43m \u001b[49m\u001b[43mpayload\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43m \u001b[49m\u001b[43m{\u001b[49m\n\u001b[1;32m 21\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mraw\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m:\u001b[49m\u001b[43m \u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 22\u001b[0m \u001b[43m \u001b[49m\u001b[43m}\u001b[49m\n\u001b[1;32m 23\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/Projects/Topoteretes/cognee/.venv/lib/python3.12/site-packages/pydantic/main.py:171\u001b[0m, in \u001b[0;36mBaseModel.__init__\u001b[0;34m(self, **data)\u001b[0m\n\u001b[1;32m 169\u001b[0m \u001b[38;5;66;03m# `__tracebackhide__` tells pytest and some other tools to omit this function from tracebacks\u001b[39;00m\n\u001b[1;32m 170\u001b[0m __tracebackhide__ \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mTrue\u001b[39;00m\n\u001b[0;32m--> 171\u001b[0m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m__pydantic_validator__\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mvalidate_python\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mself_instance\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[43m)\u001b[49m\n", - "\u001b[0;31mValidationError\u001b[0m: 2 validation errors for PointStruct\nvector.list[float]\n Input should be a valid list [type=list_type, input_value=None, input_type=NoneType]\n For further information visit https://errors.pydantic.dev/2.6/v/list_type\nvector.dict[str,union[SparseVector,list[float]]]\n Input should be a valid dictionary [type=dict_type, input_value=None, input_type=NoneType]\n For further information visit https://errors.pydantic.dev/2.6/v/dict_type" - ] - } - ], - "source": [ - "database_path = path.join(path.abspath(ROOT_DIR), \"database/data\", \"vector_retrieval_demo.db\")\n", - "\n", - "try:\n", - " import shutil\n", - " shutil.rmtree(database_path)\n", - "except Exception as exception:\n", - " print(exception)\n", - " pass\n", - "\n", - "def embed_data(data: str):\n", - " embedding_engine = TextEmbedding(model_name = \"sentence-transformers/paraphrase-multilingual-mpnet-base-v2\")\n", - " embedding_engine.embed(documents = [data])\n", - "\n", - "qdrant_client = QDrantAdapter(qdrant_path = database_path, qdrant_url = None, qdrant_api_key = None)\n", - "\n", - "def create_data_point(data: str) -> PointStruct:\n", - " return PointStruct(\n", - " id = str(uuid.uuid4()),\n", - " vector = embed_data(data),\n", - " payload = {\n", - " \"raw\": data,\n", - " }\n", - " )\n", - "\n", - "data_points = map(create_data_point, articles)\n", - "\n", - "async def run():\n", - " result = await qdrant_client.create_collection(\"test_collection\", CollectionConfig(\n", - " vector_config = {\n", - " \"size\": 1536,\n", - " \"distance\": Distance.DOT\n", - " }\n", - " ))\n", - " print(result)\n", - "\n", - " result = await qdrant_client.create_data_points(\"test_collection\", data_points)\n", - " print(result)\n", - "\n", - "await run()" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "4b6163a2", - "metadata": {}, - "outputs": [], - "source": [ - "qdrant_client = QDrantAdapter(qdrant_path = database_path, qdrant_url = None, qdrant_api_key = None)\n", - "\n", - "query_vector = embed_data(\"Last emperor of India\")\n", - "\n", - "results = await qdrant_client.find_related_data_points(collection_name = \"test_collection\", query_vector = query_vector)\n", - "\n", - "import json\n", - "\n", - "for result in results:\n", - " print(result.score)\n", - "\n", - "results[0].payload[\"raw\"]" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "3d18b00f", - "metadata": {}, - "outputs": [], - "source": [] - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3 (ipykernel)", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.10.13" - } - }, - "nbformat": 4, - "nbformat_minor": 5 -} \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 03a5f0875..c4b7328df 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1347,6 +1347,25 @@ typing-extensions = ">=4.8.0" [package.extras] all = ["email-validator (>=2.0.0)", "httpx (>=0.23.0)", "itsdangerous (>=1.1.0)", "jinja2 (>=2.11.2)", "orjson (>=3.2.1)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.7)", "pyyaml (>=5.3.1)", "ujson (>=4.0.1,!=4.0.2,!=4.1.0,!=4.2.0,!=4.3.0,!=5.0.0,!=5.1.0)", "uvicorn[standard] (>=0.12.0)"] +[[package]] +name = "fastembed" +version = "0.1.3" +description = "Fast, light, accurate library built for retrieval embedding generation" +optional = false +python-versions = ">=3.8.0,<3.12" +files = [ + {file = "fastembed-0.1.3-py3-none-any.whl", hash = "sha256:98b6c6d9effec8c96d97048e59cdd53627b16a70fcdbfa7c663772de66e11b3a"}, + {file = "fastembed-0.1.3.tar.gz", hash = "sha256:c17dc83a02938f8baae6717f18d24ed0ff0c5397b5329cbb5c7264239411346f"}, +] + +[package.dependencies] +huggingface-hub = "0.19.4" +onnx = ">=1.11,<2.0" +onnxruntime = ">=1.15,<2.0" +requests = ">=2.31,<3.0" +tokenizers = ">=0.15.0,<0.16.0" +tqdm = ">=4.65,<5.0" + [[package]] name = "fastjsonschema" version = "2.19.1" @@ -1988,13 +2007,13 @@ socks = ["socksio (==1.*)"] [[package]] name = "huggingface-hub" -version = "0.21.4" +version = "0.19.4" description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub" optional = false python-versions = ">=3.8.0" files = [ - {file = "huggingface_hub-0.21.4-py3-none-any.whl", hash = "sha256:df37c2c37fc6c82163cdd8a67ede261687d80d1e262526d6c0ce73b6b3630a7b"}, - {file = "huggingface_hub-0.21.4.tar.gz", hash = "sha256:e1f4968c93726565a80edf6dc309763c7b546d0cfe79aa221206034d50155531"}, + {file = "huggingface_hub-0.19.4-py3-none-any.whl", hash = "sha256:dba013f779da16f14b606492828f3760600a1e1801432d09fe1c33e50b825bb5"}, + {file = "huggingface_hub-0.19.4.tar.gz", hash = "sha256:176a4fc355a851c17550e7619488f383189727eab209534d7cef2114dae77b22"}, ] [package.dependencies] @@ -2007,16 +2026,16 @@ tqdm = ">=4.42.1" typing-extensions = ">=3.7.4.3" [package.extras] -all = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-rerunfailures", "pytest-vcr", "pytest-xdist", "ruff (>=0.1.3)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] +all = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.1.3)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] cli = ["InquirerPy (==0.3.4)"] -dev = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-rerunfailures", "pytest-vcr", "pytest-xdist", "ruff (>=0.1.3)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] +dev = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.1.3)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] +docs = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "hf-doc-builder", "jedi", "mypy (==1.5.1)", "numpy", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "ruff (>=0.1.3)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)", "watchdog"] fastai = ["fastai (>=2.4)", "fastcore (>=1.3.27)", "toml"] -hf-transfer = ["hf-transfer (>=0.1.4)"] inference = ["aiohttp", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)"] quality = ["mypy (==1.5.1)", "ruff (>=0.1.3)"] tensorflow = ["graphviz", "pydot", "tensorflow"] -testing = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "numpy", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-rerunfailures", "pytest-vcr", "pytest-xdist", "soundfile", "urllib3 (<2.0)"] -torch = ["safetensors", "torch"] +testing = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "gradio", "jedi", "numpy", "pydantic (>1.1,<2.0)", "pydantic (>1.1,<3.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-vcr", "pytest-xdist", "soundfile", "urllib3 (<2.0)"] +torch = ["torch"] typing = ["types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)"] [[package]] @@ -3760,7 +3779,6 @@ description = "Nvidia JIT LTO Library" optional = false python-versions = ">=3" files = [ - 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dataset_name = clean(dataset_name.replace(" ", "_")) + dataset_name = dataset_name.strip().replace(" ", "_") nested_datasets = list_dir_files(path.join(root_dir_path, file_or_dir), dataset_name) diff --git a/cognee/api/v1/cognify/cognify.py b/cognee/api/v1/cognify/cognify.py index f6b968490..f6b2d9534 100644 --- a/cognee/api/v1/cognify/cognify.py +++ b/cognee/api/v1/cognify/cognify.py @@ -3,8 +3,7 @@ from typing import List, Union import instructor from openai import OpenAI -from unstructured.cleaners.core import clean -from unstructured.partition.pdf import partition_pdf +from pypdf import PdfReader from cognee.modules.cognify.graph.add_classification_nodes import add_classification_nodes from cognee.modules.cognify.llm.label_content import label_content from cognee.modules.cognify.graph.add_label_nodes import add_label_nodes @@ -61,8 +60,9 @@ async def cognify(datasets: Union[str, List[str]] = None, graphdatamodel: object for file_metadata in files_metadata: with open(file_metadata["file_path"], "rb") as file: - elements = partition_pdf(file = file, strategy = "fast") - text = "\n".join(map(lambda element: clean(element.text), elements)) + reader = PdfReader(stream = file) + pages = list(reader.pages[:3]) + text = "\n".join([page.extract_text().strip() for page in pages]) awaitables.append(process_text(text, file_metadata)) diff --git a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py index e5bc3be9d..e09b47f2b 100644 --- a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py @@ -1,10 +1,10 @@ from typing import List -from fastembed.embedding import FlagEmbedding +from fastembed import TextEmbedding from .EmbeddingEngine import EmbeddingEngine class DefaultEmbeddingEngine(EmbeddingEngine): async def embed_text(self, text: List[str]) -> List[float]: - embedding_model = FlagEmbedding(model_name = "BAAI/bge-large-en-v1.5") + embedding_model = TextEmbedding(model_name = "BAAI/bge-large-en-v1.5") embeddings_list = list(map(lambda embedding: embedding.tolist(), embedding_model.embed(text))) return embeddings_list diff --git a/cognee/infrastructure/files/utils/get_file_metadata.py b/cognee/infrastructure/files/utils/get_file_metadata.py index 97023f6a4..9fda433fa 100644 --- a/cognee/infrastructure/files/utils/get_file_metadata.py +++ b/cognee/infrastructure/files/utils/get_file_metadata.py @@ -1,10 +1,8 @@ from typing import BinaryIO, TypedDict import filetype -from unstructured.cleaners.core import clean -from unstructured.partition.pdf import partition_pdf +from pypdf import PdfReader from .extract_keywords import extract_keywords - class FileTypeException(Exception): message: str @@ -27,10 +25,10 @@ def get_file_metadata(file: BinaryIO) -> FileMetadata: keywords: list = [] if file_type.extension == "pdf": - elements = partition_pdf(file = file, strategy = "fast") - keywords = extract_keywords( - "\n".join(map(lambda element: clean(element.text), elements)) - ) + reader = PdfReader(stream = file) + pages = list(reader.pages[:3]) + text = "\n".join([page.extract_text().strip() for page in pages]) + keywords = extract_keywords(text) file_path = file.name file_name = file_path.split("/")[-1].split(".")[0] diff --git a/poetry.lock b/poetry.lock index c4b7328df..d9ee5ef0d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -40,16 +40,6 @@ files = [ {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"}, ] -[[package]] -name = "antlr4-python3-runtime" -version = "4.9.3" -description = "ANTLR 4.9.3 runtime for Python 3.7" -optional = false -python-versions = "*" -files = [ - {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"}, -] - [[package]] name = "anyio" version = "4.3.0" @@ -331,17 +321,6 @@ files = [ [package.extras] dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] -[[package]] -name = "backoff" -version = "2.2.1" -description = "Function decoration for backoff and retry" -optional = false -python-versions = ">=3.7,<4.0" -files = [ - {file = "backoff-2.2.1-py3-none-any.whl", hash = "sha256:63579f9a0628e06278f7e47b7d7d5b6ce20dc65c5e96a6f3ca99a6adca0396e8"}, - {file = "backoff-2.2.1.tar.gz", hash = "sha256:03f829f5bb1923180821643f8753b0502c3b682293992485b0eef2807afa5cba"}, -] - [[package]] name = "beautifulsoup4" version = "4.12.3" @@ -581,17 +560,6 @@ files = [ [package.dependencies] pycparser = "*" -[[package]] -name = "chardet" -version = "5.2.0" -description = "Universal encoding detector for Python 3" -optional = false -python-versions = ">=3.7" -files = [ - 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"XlsxWriter-3.2.0-py3-none-any.whl", hash = "sha256:ecfd5405b3e0e228219bcaf24c2ca0915e012ca9464a14048021d21a995d490e"}, - {file = "XlsxWriter-3.2.0.tar.gz", hash = "sha256:9977d0c661a72866a61f9f7a809e25ebbb0fb7036baa3b9fe74afcfca6b3cb8c"}, -] +dev = ["black (>=19.3b0)", "pytest (>=4.6.2)"] [extras] athena = ["pyarrow"] @@ -7680,4 +5772,4 @@ weaviate = ["weaviate-client"] [metadata] lock-version = "2.0" python-versions = "~3.10" -content-hash = "10215cfa853ef02cefa53b51ec45592795c5e53cd5478eda9f3167aba66f846c" +content-hash = "70f02da1ef16022a5343dbd996c0a2cda722774adc3908a8c91f9cd05c35bd2f" diff --git a/pyproject.toml b/pyproject.toml index f43705a8b..d88d4c6bd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,9 +34,8 @@ debugpy = "^1.8.0" pyarrow = "^15.0.0" pylint = "^3.0.3" aiosqlite = "^0.20.0" -unstructured = {extras = ["all-docs"], version = "^0.12.5"} pymupdf = "^1.23.25" -pandas = "^2.2.1" +pandas = "^2.2.0" greenlet = "^3.0.3" ruff = "^0.2.2" filetype = "^1.2.0" @@ -51,7 +50,8 @@ graphistry = "^0.33.5" tenacity = "^8.2.3" weaviate-client = "^4.5.4" scikit-learn = "^1.4.1.post1" -fastembed = "0.1.3" +fastembed = "^0.2.5" +pypdf = "^4.1.0" [tool.poetry.extras] dbt = ["dbt-core", "dbt-redshift", "dbt-bigquery", "dbt-duckdb", "dbt-snowflake", "dbt-athena-community", "dbt-databricks"] @@ -93,7 +93,6 @@ mkdocstrings = "^0.22.0" mkdocstrings-python = "^1.1.2" pytest-examples = "^0.0.10" mkdocs-jupyter = "^0.24.6" -mkdocs-rss-plugin = "^1.12.0" mkdocs-minify-plugin = "^0.8.0" mkdocs-redirects = "^1.2.1" From 365c7bfc0ea33eb74ce60f70a017dc0c7b9e34f3 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Tue, 26 Mar 2024 17:52:49 +0100 Subject: [PATCH 06/13] Ollama fixes, missing libs + config fixes --- cognee/infrastructure/InfrastructureConfig.py | 2 +- .../vector/weaviate_db/WeaviateAdapter.py | 62 ++++++++++--------- 2 files changed, 33 insertions(+), 31 deletions(-) diff --git a/cognee/infrastructure/InfrastructureConfig.py b/cognee/infrastructure/InfrastructureConfig.py index aeff8c78c..fff2834ce 100644 --- a/cognee/infrastructure/InfrastructureConfig.py +++ b/cognee/infrastructure/InfrastructureConfig.py @@ -24,7 +24,7 @@ def get_config(self) -> dict: self.vector_engine = WeaviateAdapter( config.weaviate_url, config.weaviate_api_key, - config.openai_key + embedding_engine = DefaultEmbeddingEngine() ) return { diff --git a/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py b/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py index a299aac8a..4119c4361 100644 --- a/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py +++ b/cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py @@ -9,6 +9,7 @@ from ..models.ScoredResult import ScoredResult from ..embeddings.EmbeddingEngine import EmbeddingEngine + class WeaviateAdapter(VectorDBInterface): async_pool: Pool = None embedding_engine: EmbeddingEngine = None @@ -17,12 +18,12 @@ def __init__(self, url: str, api_key: str, embedding_engine: EmbeddingEngine): self.embedding_engine = embedding_engine self.client = weaviate.connect_to_wcs( - cluster_url = url, - auth_credentials = weaviate.auth.AuthApiKey(api_key), + cluster_url=url, + auth_credentials=weaviate.auth.AuthApiKey(api_key), # headers = { # "X-OpenAI-Api-Key": openai_api_key # }, - additional_config = wvc.init.AdditionalConfig(timeout = wvc.init.Timeout(init = 30)) + additional_config=wvc.init.AdditionalConfig(timeout=wvc.init.Timeout(init=30)) ) async def embed_data(self, data: List[str]) -> List[float]: @@ -30,12 +31,12 @@ async def embed_data(self, data: List[str]) -> List[float]: async def create_collection(self, collection_name: str): return self.client.collections.create( - name = collection_name, - properties = [ + name=collection_name, + properties=[ wvcc.Property( - name = "text", - data_type = wvcc.DataType.TEXT, - skip_vectorization = True + name="text", + data_type=wvcc.DataType.TEXT, + skip_vectorization=True ) ] ) @@ -44,13 +45,14 @@ def get_collection(self, collection_name: str): return self.client.collections.get(collection_name) async def create_data_points(self, collection_name: str, data_points: List[DataPoint]): - data_vectors = await self.embed_data(list(map(lambda data_point: data_point.get_embeddable_data(), data_points))) + data_vectors = await self.embed_data( + list(map(lambda data_point: data_point.get_embeddable_data(), data_points))) def convert_to_weaviate_data_points(data_point: DataPoint): return DataObject( - uuid = data_point.id, - properties = data_point.payload, - vector = data_vectors[data_points.index(data_point)] + uuid=data_point.id, + properties=data_point.payload, + vector=data_vectors[data_points.index(data_point)] ) objects = list(map(convert_to_weaviate_data_points, data_points)) @@ -58,35 +60,35 @@ def convert_to_weaviate_data_points(data_point: DataPoint): return self.get_collection(collection_name).data.insert_many(objects) async def search( - self, - collection_name: str, - query_text: Optional[str] = None, - query_vector: Optional[List[float]] = None, - limit: int = None, - with_vector: bool = False + self, + collection_name: str, + query_text: Optional[str] = None, + query_vector: Optional[List[float]] = None, + limit: int = None, + with_vector: bool = False ): if query_text is None and query_vector is None: raise ValueError("One of query_text or query_vector must be provided!") - + search_result = self.get_collection(collection_name).query.hybrid( - query = None, - vector = query_vector if query_vector is not None else (await self.embed_data([query_text]))[0], - limit = limit, - include_vector = with_vector, - return_metadata = wvc.query.MetadataQuery(score = True), + query=None, + vector=query_vector if query_vector is not None else (await self.embed_data([query_text]))[0], + limit=limit, + include_vector=with_vector, + return_metadata=wvc.query.MetadataQuery(score=True), ) return list(map(lambda result: ScoredResult( - id = str(result.uuid), - payload = result.properties, - score = float(result.metadata.score) + id=str(result.uuid), + payload=result.properties, + score=float(result.metadata.score) ), search_result.objects)) - async def batch_search(self, collection_name: str, query_texts: List[str], limit: int, with_vectors: bool = False): + async def batch_search(self, collection_name: str, query_texts: List[str], limit: int, with_vectors: bool = False): def query_search(query_vector): - return self.search(collection_name, query_vector = query_vector, limit = limit, with_vector = with_vectors) + return self.search(collection_name, query_vector=query_vector, limit=limit, with_vector=with_vectors) return [await query_search(query_vector) for query_vector in await self.embed_data(query_texts)] async def prune(self): - self.client.collections.delete_all() + self.client.collections.delete_all() \ No newline at end of file From 7bf80fb0f5901aa0a151063656f7bd7803793bf7 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Tue, 26 Mar 2024 21:34:19 +0100 Subject: [PATCH 07/13] Ollama fixes, missing libs + config fixes --- cognee/config.py | 8 +- cognee/infrastructure/InfrastructureConfig.py | 3 +- .../embeddings/DefaultEmbeddingEngine.py | 5 +- cognee/infrastructure/embeddings/__init__.py | 0 cognee/infrastructure/llm/get_llm_client.py | 5 + cognee/infrastructure/llm/ollama/adapter.py | 12 +- cognee/infrastructure/llm/openai/adapter.py | 2 +- poetry.lock | 744 ++++++++++++++---- pyproject.toml | 4 +- 9 files changed, 609 insertions(+), 174 deletions(-) delete mode 100644 cognee/infrastructure/embeddings/__init__.py diff --git a/cognee/config.py b/cognee/config.py index 2cee90c99..bb97d4372 100644 --- a/cognee/config.py +++ b/cognee/config.py @@ -43,10 +43,12 @@ class Config: graph_filename = os.getenv("GRAPH_NAME", "cognee_graph.pkl") # Model parameters - llm_provider: str = "ollama" + llm_provider: str = "openai" #openai, or custom or ollama + custom_endpoint: str = "" # pass claude endpoint + custom_key: Optional[str] = "custom" ollama_endpoint: str = "http://localhost:11434/v1" - ollama_key: Optional[str] = os.getenv("OLLAMA_API_KEY") - ollama_model: str = "llama2" + ollama_key: Optional[str] = "ollama" + ollama_model: str = "mistral:instruct" model: str = "gpt-4-0125-preview" # model: str = "gpt-3.5-turbo" model_endpoint: str = "openai" diff --git a/cognee/infrastructure/InfrastructureConfig.py b/cognee/infrastructure/InfrastructureConfig.py index fff2834ce..22a9a7d6b 100644 --- a/cognee/infrastructure/InfrastructureConfig.py +++ b/cognee/infrastructure/InfrastructureConfig.py @@ -29,7 +29,8 @@ def get_config(self) -> dict: return { "database_engine": self.database_engine, - "vector_engine": self.vector_engine + "vector_engine": self.vector_engine, + "llm_engine": self.llm_engine } def set_config(self, new_config: dict): diff --git a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py index e09b47f2b..3192cb5ef 100644 --- a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py @@ -1,10 +1,13 @@ from typing import List from fastembed import TextEmbedding from .EmbeddingEngine import EmbeddingEngine +from cognitive_architecture.config import Config +config = Config() +config.load() class DefaultEmbeddingEngine(EmbeddingEngine): async def embed_text(self, text: List[str]) -> List[float]: - embedding_model = TextEmbedding(model_name = "BAAI/bge-large-en-v1.5") + embedding_model = TextEmbedding(model_name = config.embedding_model) embeddings_list = list(map(lambda embedding: embedding.tolist(), embedding_model.embed(text))) return embeddings_list diff --git a/cognee/infrastructure/embeddings/__init__.py b/cognee/infrastructure/embeddings/__init__.py deleted file mode 100644 index e69de29bb..000000000 diff --git a/cognee/infrastructure/llm/get_llm_client.py b/cognee/infrastructure/llm/get_llm_client.py index 040235215..6c3fedfda 100644 --- a/cognee/infrastructure/llm/get_llm_client.py +++ b/cognee/infrastructure/llm/get_llm_client.py @@ -10,6 +10,7 @@ class LLMProvider(Enum): OPENAI = "openai" OLLAMA = "ollama" + CUSTOM = "custom" config = Config() config.load() @@ -24,6 +25,10 @@ def get_llm_client(): elif provider == LLMProvider.OLLAMA: print("Using Ollama API") return OllamaAPIAdapter(config.ollama_endpoint, config.ollama_key, config.ollama_model) + elif provider == LLMProvider.CUSTOM: + print("Using Custom API") + return OllamaAPIAdapter(config.custom_endpoint, config.custom_key, config.model) + # Add your custom LLM provider here else: raise ValueError(f"Unsupported LLM provider: {provider}") diff --git a/cognee/infrastructure/llm/ollama/adapter.py b/cognee/infrastructure/llm/ollama/adapter.py index a6069e5f6..2372bd1c8 100644 --- a/cognee/infrastructure/llm/ollama/adapter.py +++ b/cognee/infrastructure/llm/ollama/adapter.py @@ -18,12 +18,12 @@ class OllamaAPIAdapter(LLMInterface): def __init__(self, ollama_endpoint, api_key: str, model: str): self.aclient = instructor.patch( - AsyncOpenAI( - base_url=ollama_endpoint, - api_key=api_key, # required, but unused - ), - mode=instructor.Mode.JSON, - ) + AsyncOpenAI( + base_url=ollama_endpoint, + api_key=api_key, # required, but unused + ), + mode=instructor.Mode.JSON, + ) self.model = model @retry(stop=stop_after_attempt(5)) diff --git a/cognee/infrastructure/llm/openai/adapter.py b/cognee/infrastructure/llm/openai/adapter.py index d4fc490bf..18ab93674 100644 --- a/cognee/infrastructure/llm/openai/adapter.py +++ b/cognee/infrastructure/llm/openai/adapter.py @@ -13,7 +13,7 @@ class OpenAIAdapter(LLMInterface): """Adapter for OpenAI's GPT-3, 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+18,7 @@ classifiers = [ [tool.poetry.dependencies] python = "~3.10" -openai = "1.12.0" +openai = "1.14.3" python-dotenv = "1.0.1" fastapi = "^0.109.2" uvicorn = "0.22.0" @@ -26,7 +26,7 @@ boto3 = "^1.26.125" gunicorn = "^20.1.0" sqlalchemy = "^2.0.21" asyncpg = "^0.28.0" -instructor = "^0.3.4" +instructor = "^0.6.7" networkx = "^3.2.1" graphviz = "^0.20.1" langdetect = "^1.0.9" From 90c41512ed5309f1199cbdfc7df164a9153f7494 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Thu, 28 Mar 2024 11:26:22 +0100 Subject: [PATCH 08/13] Ollama fixes, missing libs + config fixes --- cognee/api/v1/add/add.py | 2 +- cognee/api/v1/add/add_standalone.py | 2 +- cognee/api/v1/add/remember.py | 2 +- cognee/api/v1/cognify/cognify.py | 2 +- cognee/config.py | 3 +- .../embeddings/DefaultEmbeddingEngine.py | 2 +- cognee/infrastructure/llm/get_llm_client.py | 5 +++ cognee/infrastructure/llm/llm_interface.py | 28 +++++++------- poetry.lock | 37 ++++++++++++++++++- pyproject.toml | 2 + 10 files changed, 64 insertions(+), 21 deletions(-) diff --git a/cognee/api/v1/add/add.py b/cognee/api/v1/add/add.py index b91a979a8..8e94a7d35 100644 --- a/cognee/api/v1/add/add.py +++ b/cognee/api/v1/add/add.py @@ -87,4 +87,4 @@ def data_resources(file_paths: str): write_disposition = "merge", ) - return run_info + return run_info \ No newline at end of file diff --git a/cognee/api/v1/add/add_standalone.py b/cognee/api/v1/add/add_standalone.py index 7def013eb..ef7be455b 100644 --- a/cognee/api/v1/add/add_standalone.py +++ b/cognee/api/v1/add/add_standalone.py @@ -50,4 +50,4 @@ async def add_standalone( def is_data_path(data: str) -> bool: - return False if not isinstance(data, str) else data.startswith("file://") + return False if not isinstance(data, str) else data.startswith("file://") \ No newline at end of file diff --git a/cognee/api/v1/add/remember.py b/cognee/api/v1/add/remember.py index 4a6dbf8a2..de11aa71b 100644 --- a/cognee/api/v1/add/remember.py +++ b/cognee/api/v1/add/remember.py @@ -18,4 +18,4 @@ async def remember(user_id: str, memory_name: str, payload: List[str]): if await is_existing_memory(memory_name) is False: raise MemoryException(f"Memory with the name \"{memory_name}\" doesn't exist.") - await create_information_points(memory_name, payload) + await create_information_points(memory_name, payload) \ No newline at end of file diff --git a/cognee/api/v1/cognify/cognify.py b/cognee/api/v1/cognify/cognify.py index f6b2d9534..e3eecc656 100644 --- a/cognee/api/v1/cognify/cognify.py +++ b/cognee/api/v1/cognify/cognify.py @@ -193,4 +193,4 @@ async def main(): print(graph_url) - asyncio.run(main()) + asyncio.run(main()) \ No newline at end of file diff --git a/cognee/config.py b/cognee/config.py index bb97d4372..a9a210f5a 100644 --- a/cognee/config.py +++ b/cognee/config.py @@ -43,7 +43,8 @@ class Config: graph_filename = os.getenv("GRAPH_NAME", "cognee_graph.pkl") # Model parameters - llm_provider: str = "openai" #openai, or custom or ollama + llm_provider: str = "anthropic" #openai, or custom or ollama + custom_model: str = "claude-3-haiku-20240307" custom_endpoint: str = "" # pass claude endpoint custom_key: Optional[str] = "custom" ollama_endpoint: str = "http://localhost:11434/v1" diff --git a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py index 3192cb5ef..c91d1cf29 100644 --- a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py @@ -1,7 +1,7 @@ from typing import List from fastembed import TextEmbedding from .EmbeddingEngine import EmbeddingEngine -from cognitive_architecture.config import Config +from cognee.config import Config config = Config() config.load() diff --git a/cognee/infrastructure/llm/get_llm_client.py b/cognee/infrastructure/llm/get_llm_client.py index 6c3fedfda..7720f3a6e 100644 --- a/cognee/infrastructure/llm/get_llm_client.py +++ b/cognee/infrastructure/llm/get_llm_client.py @@ -1,6 +1,7 @@ """Get the LLM client.""" from enum import Enum from cognee.config import Config +from .anthropic.adapter import AnthropicAdapter from .openai.adapter import OpenAIAdapter from .ollama.adapter import OllamaAPIAdapter import logging @@ -10,6 +11,7 @@ class LLMProvider(Enum): OPENAI = "openai" OLLAMA = "ollama" + ANTHROPIC = "anthropic" CUSTOM = "custom" config = Config() @@ -25,6 +27,9 @@ def get_llm_client(): elif provider == LLMProvider.OLLAMA: print("Using Ollama API") return OllamaAPIAdapter(config.ollama_endpoint, config.ollama_key, config.ollama_model) + elif provider == LLMProvider.ANTHROPIC: + print("Using Anthropic API") + return AnthropicAdapter(config.ollama_endpoint, config.ollama_key, config.custom_model) elif provider == LLMProvider.CUSTOM: print("Using Custom API") return OllamaAPIAdapter(config.custom_endpoint, config.custom_key, config.model) diff --git a/cognee/infrastructure/llm/llm_interface.py b/cognee/infrastructure/llm/llm_interface.py index dfc56536a..230082482 100644 --- a/cognee/infrastructure/llm/llm_interface.py +++ b/cognee/infrastructure/llm/llm_interface.py @@ -6,20 +6,20 @@ class LLMInterface(Protocol): """ LLM Interface """ - @abstractmethod - async def async_get_embedding_with_backoff(self, text, model="text-embedding-ada-002"): - """To get text embeddings, import/call this function""" - raise NotImplementedError - - @abstractmethod - def get_embedding_with_backoff(self, text: str, model: str = "text-embedding-ada-002"): - """To get text embeddings, import/call this function""" - raise NotImplementedError - - @abstractmethod - async def async_get_batch_embeddings_with_backoff(self, texts: List[str], models: List[str]): - """To get multiple text embeddings in parallel, import/call this function""" - raise NotImplementedError + # @abstractmethod + # async def async_get_embedding_with_backoff(self, text, model="text-embedding-ada-002"): + # """To get text embeddings, import/call this function""" + # raise NotImplementedError + # + # @abstractmethod + # def get_embedding_with_backoff(self, text: str, model: str = "text-embedding-ada-002"): + # """To get text embeddings, import/call this function""" + # raise NotImplementedError + # + # @abstractmethod + # async def async_get_batch_embeddings_with_backoff(self, texts: List[str], models: List[str]): + # """To get multiple text embeddings in parallel, import/call this function""" + # raise NotImplementedError # """ Get completions """ # async def acompletions_with_backoff(self, **kwargs): diff --git a/poetry.lock b/poetry.lock index 0db77dd7d..62191ff44 100644 --- a/poetry.lock +++ b/poetry.lock @@ -150,6 +150,30 @@ files = [ {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"}, ] +[[package]] +name = "anthropic" +version = "0.21.3" +description = "The official Python library for the anthropic API" +optional = false +python-versions = ">=3.7" +files = [ + {file = "anthropic-0.21.3-py3-none-any.whl", hash = "sha256:5869115453b543a46ded6515c9f29b8d610b6e94bbba3230ad80ac947d2b0862"}, + {file = "anthropic-0.21.3.tar.gz", hash = "sha256:02f1ab5694c497e2b2d42d30d51a4f2edcaca92d2ec86bb64fe78a9c7434a869"}, +] + +[package.dependencies] +anyio = ">=3.5.0,<5" +distro = ">=1.7.0,<2" +httpx = ">=0.23.0,<1" +pydantic = ">=1.9.0,<3" +sniffio = "*" +tokenizers = ">=0.13.0" +typing-extensions = ">=4.7,<5" + +[package.extras] +bedrock = ["boto3 (>=1.28.57)", "botocore (>=1.31.57)"] +vertex = ["google-auth (>=2,<3)"] + [[package]] name = "anyio" version = "4.3.0" @@ -6065,6 +6089,17 @@ files = [ [package.extras] dev = ["black (>=19.3b0)", "pytest (>=4.6.2)"] +[[package]] +name = "xmltodict" +version = "0.13.0" +description = "Makes working with XML feel like you are working with JSON" +optional = false +python-versions = ">=3.4" +files = [ + {file = "xmltodict-0.13.0-py2.py3-none-any.whl", hash = "sha256:aa89e8fd76320154a40d19a0df04a4695fb9dc5ba977cbb68ab3e4eb225e7852"}, + {file = "xmltodict-0.13.0.tar.gz", hash = "sha256:341595a488e3e01a85a9d8911d8912fd922ede5fecc4dce437eb4b6c8d037e56"}, +] + [[package]] name = "yarl" version = "1.9.4" @@ -6196,4 +6231,4 @@ weaviate = ["weaviate-client"] [metadata] lock-version = "2.0" python-versions = "~3.10" -content-hash = "d929caab2d4114374cf2c36e1d956a7950476ff6e0a550e50011702c568f9195" +content-hash = "1a6b4648fa95a43e76eef36fc6f9951b34988001ea24b8288bcc70962f05d7db" diff --git a/pyproject.toml b/pyproject.toml index 92214ad92..8879b2040 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -52,6 +52,8 @@ weaviate-client = "^4.5.4" scikit-learn = "^1.4.1.post1" fastembed = "^0.2.5" pypdf = "^4.1.0" +anthropic = "^0.21.3" +xmltodict = "^0.13.0" [tool.poetry.extras] dbt = ["dbt-core", "dbt-redshift", "dbt-bigquery", "dbt-duckdb", "dbt-snowflake", "dbt-athena-community", "dbt-databricks"] From d1435f6cd315f1c70eb721dd40a322cac4bd7030 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Thu, 28 Mar 2024 11:40:10 +0100 Subject: [PATCH 09/13] Added claude support. Still buggy due to instructor issues --- .../infrastructure/llm/anthropic/__init__.py | 0 .../infrastructure/llm/anthropic/adapter.py | 57 +++++++++++++++++++ 2 files changed, 57 insertions(+) create mode 100644 cognee/infrastructure/llm/anthropic/__init__.py create mode 100644 cognee/infrastructure/llm/anthropic/adapter.py diff --git a/cognee/infrastructure/llm/anthropic/__init__.py b/cognee/infrastructure/llm/anthropic/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/cognee/infrastructure/llm/anthropic/adapter.py b/cognee/infrastructure/llm/anthropic/adapter.py new file mode 100644 index 000000000..92decfca0 --- /dev/null +++ b/cognee/infrastructure/llm/anthropic/adapter.py @@ -0,0 +1,57 @@ +import asyncio + +import aiohttp +from typing import List, Type +from pydantic import BaseModel +import instructor +from tenacity import retry, stop_after_attempt + +import anthropic +import openai +from cognee.infrastructure.llm.llm_interface import LLMInterface +from cognee.infrastructure.llm.prompts import read_query_prompt + + +class AnthropicAdapter(LLMInterface): + """Adapter for Ollama's API""" + + def __init__(self, ollama_endpoint, api_key: str, model: str): + + + self.aclient = instructor.patch( + create=anthropic.Anthropic().messages.create, + mode=instructor.Mode.ANTHROPIC_TOOLS + ) + self.model = model + + + + + @retry(stop=stop_after_attempt(5)) + async def acreate_structured_output(self, text_input: str, system_prompt: str, + response_model: Type[BaseModel]) -> BaseModel: + """Generate a response from a user query.""" + return await self.aclient( + model=self.model, + max_tokens=4096, + max_retries=0, + messages=[ + { + "role": "user", + "content": f"""Use the given format to + extract information from the following input: {text_input}. {system_prompt}""", + } + ], + response_model=response_model, + ) + + def show_prompt(self, text_input: str, system_prompt: str) -> str: + """Format and display the prompt for a user query.""" + if not text_input: + text_input = "No user input provided." + if not system_prompt: + raise ValueError("No system prompt path provided.") + system_prompt = read_query_prompt(system_prompt) + + formatted_prompt = f"""System Prompt:\n{system_prompt}\n\nUser Input:\n{text_input}\n""" if system_prompt else None + return formatted_prompt From 277acf081b1517c1cc268f919b161c1aa3d2b5e5 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Thu, 28 Mar 2024 11:54:23 +0100 Subject: [PATCH 10/13] Added anyscale support --- cognee/config.py | 8 ++++---- .../llm/{ollama => generic_llm_api}/adapter.py | 7 +++---- cognee/infrastructure/llm/get_llm_client.py | 8 ++++---- 3 files changed, 11 insertions(+), 12 deletions(-) rename cognee/infrastructure/llm/{ollama => generic_llm_api}/adapter.py (96%) diff --git a/cognee/config.py b/cognee/config.py index a9a210f5a..2523715fd 100644 --- a/cognee/config.py +++ b/cognee/config.py @@ -43,10 +43,10 @@ class Config: graph_filename = os.getenv("GRAPH_NAME", "cognee_graph.pkl") # Model parameters - llm_provider: str = "anthropic" #openai, or custom or ollama - custom_model: str = "claude-3-haiku-20240307" - custom_endpoint: str = "" # pass claude endpoint - custom_key: Optional[str] = "custom" + llm_provider: str = "custom" #openai, or custom or ollama + custom_model: str = "mistralai/Mixtral-8x7B-Instruct-v0.1" + custom_endpoint: str = "https://api.endpoints.anyscale.com/v1" # pass claude endpoint + custom_key: Optional[str] = os.getenv("ANYSCALE_API_KEY") ollama_endpoint: str = "http://localhost:11434/v1" ollama_key: Optional[str] = "ollama" ollama_model: str = "mistral:instruct" diff --git a/cognee/infrastructure/llm/ollama/adapter.py b/cognee/infrastructure/llm/generic_llm_api/adapter.py similarity index 96% rename from cognee/infrastructure/llm/ollama/adapter.py rename to cognee/infrastructure/llm/generic_llm_api/adapter.py index 2372bd1c8..0dac5e76d 100644 --- a/cognee/infrastructure/llm/ollama/adapter.py +++ b/cognee/infrastructure/llm/generic_llm_api/adapter.py @@ -12,7 +12,7 @@ from cognee.infrastructure.llm.prompts import read_query_prompt -class OllamaAPIAdapter(LLMInterface): +class GenericAPIAdapter(LLMInterface): """Adapter for Ollama's API""" def __init__(self, ollama_endpoint, api_key: str, model: str): @@ -89,9 +89,8 @@ async def acreate_structured_output(self, text_input: str, system_prompt: str, { "role": "user", "content": f"""Use the given format to - extract information from the following input: {text_input}. """, - }, - {"role": "system", "content": system_prompt}, + extract information from the following input: {text_input}. {system_prompt} """, + } ], response_model=response_model, ) diff --git a/cognee/infrastructure/llm/get_llm_client.py b/cognee/infrastructure/llm/get_llm_client.py index 7720f3a6e..37c685571 100644 --- a/cognee/infrastructure/llm/get_llm_client.py +++ b/cognee/infrastructure/llm/get_llm_client.py @@ -3,7 +3,7 @@ from cognee.config import Config from .anthropic.adapter import AnthropicAdapter from .openai.adapter import OpenAIAdapter -from .ollama.adapter import OllamaAPIAdapter +from .generic_llm_api.adapter import GenericAPIAdapter import logging logging.basicConfig(level=logging.INFO) @@ -26,13 +26,13 @@ def get_llm_client(): return OpenAIAdapter(config.openai_key, config.model) elif provider == LLMProvider.OLLAMA: print("Using Ollama API") - return OllamaAPIAdapter(config.ollama_endpoint, config.ollama_key, config.ollama_model) + return GenericAPIAdapter(config.ollama_endpoint, config.ollama_key, config.ollama_model) elif provider == LLMProvider.ANTHROPIC: print("Using Anthropic API") - return AnthropicAdapter(config.ollama_endpoint, config.ollama_key, config.custom_model) + return AnthropicAdapter(config.custom_endpoint, config.custom_endpoint, config.custom_model) elif provider == LLMProvider.CUSTOM: print("Using Custom API") - return OllamaAPIAdapter(config.custom_endpoint, config.custom_key, config.model) + return GenericAPIAdapter(config.custom_endpoint, config.custom_key, config.custom_model) # Add your custom LLM provider here else: raise ValueError(f"Unsupported LLM provider: {provider}") From 0880fa28634a9f82ef5f241d7abde7b15e257981 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Thu, 28 Mar 2024 20:35:40 +0100 Subject: [PATCH 11/13] Added anyscale support --- cognee/config.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cognee/config.py b/cognee/config.py index 2523715fd..3d91efb71 100644 --- a/cognee/config.py +++ b/cognee/config.py @@ -43,7 +43,7 @@ class Config: graph_filename = os.getenv("GRAPH_NAME", "cognee_graph.pkl") # Model parameters - llm_provider: str = "custom" #openai, or custom or ollama + llm_provider: str = "openai" #openai, or custom or ollama custom_model: str = "mistralai/Mixtral-8x7B-Instruct-v0.1" custom_endpoint: str = "https://api.endpoints.anyscale.com/v1" # pass claude endpoint custom_key: Optional[str] = os.getenv("ANYSCALE_API_KEY") From b950dda3f6412a481f89907e83105f8022928807 Mon Sep 17 00:00:00 2001 From: Vasilije <8619304+Vasilije1990@users.noreply.github.com> Date: Fri, 29 Mar 2024 11:10:37 +0100 Subject: [PATCH 12/13] Updated instructor --- poetry.lock | 60 +++++++++++++++++++++++++++----------------------- pyproject.toml | 2 +- 2 files changed, 33 insertions(+), 29 deletions(-) diff --git a/poetry.lock b/poetry.lock index 62191ff44..80ff2219f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -542,17 +542,17 @@ css = ["tinycss2 (>=1.1.0,<1.3)"] [[package]] name = "boto3" -version = "1.34.70" +version = "1.34.73" description = "The AWS SDK for Python" optional = false python-versions = ">=3.8" files = [ - {file = "boto3-1.34.70-py3-none-any.whl", hash = "sha256:8d7902e2c0c62837457ba18146e3feaf1dec62018617edc5c0336b65b305b682"}, - {file = "boto3-1.34.70.tar.gz", hash = "sha256:54150a52eb93028b8e09df00319e8dcb68be7459333d5da00d706d75ba5130d6"}, + {file = "boto3-1.34.73-py3-none-any.whl", hash = "sha256:4d68e7c7c1339e251c661fd6e2a34e31d281177106326712417fed839907fa84"}, + {file = "boto3-1.34.73.tar.gz", hash = "sha256:f45503333286c03fb692a3ce497b6fdb4e88c51c98a3b8ff05071d7f56571448"}, ] [package.dependencies] -botocore = ">=1.34.70,<1.35.0" +botocore = ">=1.34.73,<1.35.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -561,13 +561,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.34.70" +version = "1.34.73" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.8" files = [ - {file = "botocore-1.34.70-py3-none-any.whl", hash = "sha256:c86944114e85c8a8d5da06fb84f2609ed3bd23cd2fc06b30250bef7e37e8c589"}, - {file = "botocore-1.34.70.tar.gz", hash = "sha256:fa03d4972cd57d505e6c0eb5d7c7a1caeb7dd49e84f963f7ebeca41fe8ab736e"}, + {file = "botocore-1.34.73-py3-none-any.whl", hash = "sha256:88d660b711cc5b5b049e15d547cb09526f86e48c15b78dacad78522109502b91"}, + {file = "botocore-1.34.73.tar.gz", hash = "sha256:8df020b6682b9f1e9ee7b0554d5d0c14b7b23e3de070c85bcdf07fb20bfe4e2b"}, ] [package.dependencies] @@ -1915,13 +1915,13 @@ files = [ [[package]] name = "httpcore" -version = "1.0.4" +version = "1.0.5" description = "A minimal low-level HTTP client." optional = false python-versions = ">=3.8" files = [ - {file = "httpcore-1.0.4-py3-none-any.whl", hash = "sha256:ac418c1db41bade2ad53ae2f3834a3a0f5ae76b56cf5aa497d2d033384fc7d73"}, - {file = "httpcore-1.0.4.tar.gz", hash = "sha256:cb2839ccfcba0d2d3c1131d3c3e26dfc327326fbe7a5dc0dbfe9f6c9151bb022"}, + {file = "httpcore-1.0.5-py3-none-any.whl", hash = "sha256:421f18bac248b25d310f3cacd198d55b8e6125c107797b609ff9b7a6ba7991b5"}, + {file = "httpcore-1.0.5.tar.gz", hash = "sha256:34a38e2f9291467ee3b44e89dd52615370e152954ba21721378a87b2960f7a61"}, ] [package.dependencies] @@ -1932,7 +1932,7 @@ h11 = ">=0.13,<0.15" asyncio = ["anyio (>=4.0,<5.0)"] http2 = ["h2 (>=3,<5)"] socks = ["socksio (==1.*)"] -trio = ["trio (>=0.22.0,<0.25.0)"] +trio = ["trio (>=0.22.0,<0.26.0)"] [[package]] name = "httpx" @@ -2054,13 +2054,13 @@ files = [ [[package]] name = "instructor" -version = "0.6.7" +version = "0.6.8" description = "structured outputs for llm" optional = false python-versions = "<4.0,>=3.10" files = [ - {file = "instructor-0.6.7-py3-none-any.whl", hash = "sha256:bb2cdc4b56ba9af763e01e590e051b13168038537a9ef12648142cec53472e53"}, - {file = "instructor-0.6.7.tar.gz", hash = "sha256:cbae44db8c71796a6237432f8c929b15d021b13c82b5474dc2921b2cdcfe647f"}, + {file = "instructor-0.6.8-py3-none-any.whl", hash = "sha256:f2099e49b21232ddb50ce9ba27e13159dcb3af17e8ede7cbcd93ce990fe6bc82"}, + {file = "instructor-0.6.8.tar.gz", hash = "sha256:e261d73deb3535d62ee775c437b82aeb6e9c2b2f63bb533b53a9fa6a47dbb95a"}, ] [package.dependencies] @@ -2072,15 +2072,18 @@ rich = ">=13.7.0,<14.0.0" tenacity = ">=8.2.3,<9.0.0" typer = ">=0.9.0,<0.10.0" +[package.extras] +anthropic = ["anthropic (>=0.18.1,<0.19.0)", "xmltodict (>=0.13.0,<0.14.0)"] + [[package]] name = "ipykernel" -version = "6.29.3" +version = "6.29.4" description = "IPython Kernel for Jupyter" optional = false python-versions = ">=3.8" files = [ - {file = "ipykernel-6.29.3-py3-none-any.whl", hash = "sha256:5aa086a4175b0229d4eca211e181fb473ea78ffd9869af36ba7694c947302a21"}, - {file = "ipykernel-6.29.3.tar.gz", hash = "sha256:e14c250d1f9ea3989490225cc1a542781b095a18a19447fcf2b5eaf7d0ac5bd2"}, + {file = "ipykernel-6.29.4-py3-none-any.whl", hash = "sha256:1181e653d95c6808039c509ef8e67c4126b3b3af7781496c7cbfb5ed938a27da"}, + {file = "ipykernel-6.29.4.tar.gz", hash = "sha256:3d44070060f9475ac2092b760123fadf105d2e2493c24848b6691a7c4f42af5c"}, ] [package.dependencies] @@ -4684,26 +4687,26 @@ cffi = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] name = "qdrant-client" -version = "1.8.0" +version = "1.8.2" description = "Client library for the Qdrant vector search engine" optional = false python-versions = ">=3.8" files = [ - {file = "qdrant_client-1.8.0-py3-none-any.whl", hash = "sha256:fa28d3eb64c0c57ec029c7c85c71f6c72c197f92502022655741f3632c518e29"}, - {file = "qdrant_client-1.8.0.tar.gz", hash = "sha256:2a1a3f2cbacc7adba85644cf6cfdee20401cf25764b32da479c81fb63e178d15"}, + {file = "qdrant_client-1.8.2-py3-none-any.whl", hash = "sha256:ee5341c0486d09e4346b0f5ef7781436e6d8cdbf1d5ecddfde7adb3647d353a8"}, + {file = "qdrant_client-1.8.2.tar.gz", hash = "sha256:65078d5328bc0393f42a46a31cd319a989b8285bf3958360acf1dffffdf4cc4e"}, ] [package.dependencies] grpcio = ">=1.41.0" grpcio-tools = ">=1.41.0" -httpx = {version = ">=0.14.0", extras = ["http2"]} +httpx = {version = ">=0.20.0", extras = ["http2"]} numpy = {version = ">=1.21", markers = "python_version >= \"3.8\" and python_version < \"3.12\""} portalocker = ">=2.7.0,<3.0.0" pydantic = ">=1.10.8" urllib3 = ">=1.26.14,<3" [package.extras] -fastembed = ["fastembed (==0.2.2)"] +fastembed = ["fastembed (==0.2.5)"] [[package]] name = "redis" @@ -4863,17 +4866,18 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "requirements-parser" -version = "0.5.0" +version = "0.7.0" description = "This is a small Python module for parsing Pip requirement files." optional = false -python-versions = ">=3.6,<4.0" +python-versions = "<4.0,>=3.7" files = [ - {file = "requirements-parser-0.5.0.tar.gz", hash = "sha256:3336f3a3ae23e06d3f0f88595e4052396e3adf91688787f637e5d2ca1a904069"}, - {file = "requirements_parser-0.5.0-py3-none-any.whl", hash = "sha256:e7fcdcd04f2049e73a9fb150d8a0f9d51ce4108f5f7cbeac74c484e17b12bcd9"}, + {file = "requirements_parser-0.7.0-py3-none-any.whl", hash = "sha256:80569baa23b13cf0980fb2ceb5dc2e3b7ee05df203a26d83e3ed56c155c6597a"}, + {file = "requirements_parser-0.7.0.tar.gz", hash = "sha256:33f1b1c668fa85df8c6a638c479ac743ea8541f5d8d56011591068757ce1a201"}, ] [package.dependencies] -types-setuptools = ">=57.0.0" +setuptools = ">=59.7.0" +types-setuptools = ">=59.7.0" [[package]] name = "rfc3339-validator" @@ -6231,4 +6235,4 @@ weaviate = ["weaviate-client"] [metadata] lock-version = "2.0" python-versions = "~3.10" -content-hash = "1a6b4648fa95a43e76eef36fc6f9951b34988001ea24b8288bcc70962f05d7db" +content-hash = "35ad50753694260acc7e34b3c85e869e310fe2fb614fb5da3a1f3c1df4e82b1a" diff --git a/pyproject.toml b/pyproject.toml index 8879b2040..2ef060ad0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,7 +26,7 @@ boto3 = "^1.26.125" gunicorn = "^20.1.0" sqlalchemy = "^2.0.21" asyncpg = "^0.28.0" -instructor = "^0.6.7" +instructor = "^0.6.8" networkx = "^3.2.1" graphviz = "^0.20.1" langdetect = "^1.0.9" From 8d4be049f4a03fd394d1c8186e6b1727c5bf29d5 Mon Sep 17 00:00:00 2001 From: Boris Arzentar Date: Fri, 29 Mar 2024 13:53:59 +0100 Subject: [PATCH 13/13] feat: add support for text and file in cognee.add --- .gitignore | 3 +- .../062c22df-d99b-599f-90cd-2d325c8bcf69.txt | 6 + README.md | 4 +- cognee/__init__.py | 1 + cognee/api/v1/add/add.py | 117 ++++++++++++------ cognee/api/v1/cognify/cognify.py | 23 ++-- cognee/api/v1/config/__init__.py | 1 + cognee/api/v1/config/config.py | 9 ++ cognee/config.py | 8 +- cognee/infrastructure/InfrastructureConfig.py | 25 ++-- cognee/infrastructure/data/__init__.py | 1 - .../{files => data}/utils/extract_keywords.py | 3 + .../embeddings/DefaultEmbeddingEngine.py | 5 +- .../files/storage/LocalStorage.py | 21 ++-- .../files/utils/extract_text_from_file.py | 11 ++ .../files/utils/get_file_metadata.py | 28 ++--- .../files/utils/guess_file_type.py | 31 +++++ .../files/utils/is_text_content.py | 24 ++++ .../cognify/graph/add_node_connections.py | 2 +- .../llm/resolve_cross_graph_references.py | 1 - cognee/modules/ingestion/__init__.py | 1 - .../ingestion}/add_data_to_dataset.py | 4 +- cognee/modules/ingestion/classify.py | 2 +- .../ingestion/data_types/BinaryData.py | 5 - .../ingestion/data_types/IngestionData.py | 7 +- .../modules/ingestion/data_types/TextData.py | 12 +- cognee/modules/ingestion/save.py | 6 +- notebooks/full_run.ipynb | 67 +++++++++- 28 files changed, 309 insertions(+), 119 deletions(-) create mode 100644 .test_data/062c22df-d99b-599f-90cd-2d325c8bcf69.txt create mode 100644 cognee/api/v1/config/__init__.py create mode 100644 cognee/api/v1/config/config.py rename cognee/infrastructure/{files => data}/utils/extract_keywords.py (85%) create mode 100644 cognee/infrastructure/files/utils/extract_text_from_file.py create mode 100644 cognee/infrastructure/files/utils/guess_file_type.py create mode 100644 cognee/infrastructure/files/utils/is_text_content.py rename cognee/{infrastructure/data => modules/ingestion}/add_data_to_dataset.py (96%) diff --git a/.gitignore b/.gitignore index c1c9f7970..83d66bd38 100644 --- a/.gitignore +++ b/.gitignore @@ -165,5 +165,6 @@ cython_debug/ .vscode/ database/data/ cognee/data/ +cognee/cache/ -.DS_Store +# .DS_Store diff --git a/.test_data/062c22df-d99b-599f-90cd-2d325c8bcf69.txt b/.test_data/062c22df-d99b-599f-90cd-2d325c8bcf69.txt new file mode 100644 index 000000000..a80bf8869 --- /dev/null +++ b/.test_data/062c22df-d99b-599f-90cd-2d325c8bcf69.txt @@ -0,0 +1,6 @@ +A quantum computer is a computer that takes advantage of quantum mechanical phenomena. +At small scales, physical matter exhibits properties of both particles and waves, and quantum computing leverages this behavior, specifically quantum superposition and entanglement, using specialized hardware that supports the preparation and manipulation of quantum states. +Classical physics cannot explain the operation of these quantum devices, and a scalable quantum computer could perform some calculations exponentially faster (with respect to input size scaling)[2] than any modern "classical" computer. In particular, a large-scale quantum computer could break widely used encryption schemes and aid physicists in performing physical simulations; however, the current state of the technology is largely experimental and impractical, with several obstacles to useful applications. Moreover, scalable quantum computers do not hold promise for many practical tasks, and for many important tasks quantum speedups are proven impossible. +The basic unit of information in quantum computing is the qubit, similar to the bit in traditional digital electronics. Unlike a classical bit, a qubit can exist in a superposition of its two "basis" states. When measuring a qubit, the result is a probabilistic output of a classical bit, therefore making quantum computers nondeterministic in general. If a quantum computer manipulates the qubit in a particular way, wave interference effects can amplify the desired measurement results. The design of quantum algorithms involves creating procedures that allow a quantum computer to perform calculations efficiently and quickly. +Physically engineering high-quality qubits has proven challenging. If a physical qubit is not sufficiently isolated from its environment, it suffers from quantum decoherence, introducing noise into calculations. Paradoxically, perfectly isolating qubits is also undesirable because quantum computations typically need to initialize qubits, perform controlled qubit interactions, and measure the resulting quantum states. Each of those operations introduces errors and suffers from noise, and such inaccuracies accumulate. +In principle, a non-quantum (classical) computer can solve the same computational problems as a quantum computer, given enough time. Quantum advantage comes in the form of time complexity rather than computability, and quantum complexity theory shows that some quantum algorithms for carefully selected tasks require exponentially fewer computational steps than the best known non-quantum algorithms. Such tasks can in theory be solved on a large-scale quantum computer whereas classical computers would not finish computations in any reasonable amount of time. However, quantum speedup is not universal or even typical across computational tasks, since basic tasks such as sorting are proven to not allow any asymptotic quantum speedup. Claims of quantum supremacy have drawn significant attention to the discipline, but are demonstrated on contrived tasks, while near-term practical use cases remain limited. diff --git a/README.md b/README.md index 6669bbf0c..71f3b2448 100644 --- a/README.md +++ b/README.md @@ -99,13 +99,13 @@ For more info here are the docs< With pip: ```bash -pip install cognee["weaviate"] +pip install "cognee[weaviate]" ``` With poetry: ```bash -poetry add "cognee["weaviate"]" +poetry add "cognee[weaviate]" ``` ## 💻 Usage diff --git a/cognee/__init__.py b/cognee/__init__.py index 0d90ec84a..5aa772537 100644 --- a/cognee/__init__.py +++ b/cognee/__init__.py @@ -1,3 +1,4 @@ +from .api.v1.config.config import config from .api.v1.add.add import add from .api.v1.cognify.cognify import cognify from .api.v1.list_datasets.list_datasets import list_datasets diff --git a/cognee/api/v1/add/add.py b/cognee/api/v1/add/add.py index b91a979a8..b71a47b06 100644 --- a/cognee/api/v1/add/add.py +++ b/cognee/api/v1/add/add.py @@ -5,50 +5,45 @@ import duckdb from cognee.root_dir import get_absolute_path import cognee.modules.ingestion as ingestion +from cognee.infrastructure import infrastructure_config from cognee.infrastructure.files import get_file_metadata from cognee.infrastructure.files.storage import LocalStorage -async def add(file_paths: Union[str, List[str]], dataset_name: str = None): - if isinstance(file_paths, str): - # Directory path provided, we need to extract the file paths and dataset name - - def list_dir_files(root_dir_path: str, parent_dir: str = "root"): - datasets = {} - - for file_or_dir in listdir(root_dir_path): - if path.isdir(path.join(root_dir_path, file_or_dir)): - dataset_name = file_or_dir if parent_dir == "root" else parent_dir + "." + file_or_dir - dataset_name = dataset_name.strip().replace(" ", "_") - - nested_datasets = list_dir_files(path.join(root_dir_path, file_or_dir), dataset_name) - - for dataset in nested_datasets.keys(): - datasets[dataset] = nested_datasets[dataset] - else: - if parent_dir not in datasets: - datasets[parent_dir] = [] - - datasets[parent_dir].append(path.join(root_dir_path, file_or_dir)) - - return datasets - - datasets = list_dir_files(file_paths) - - results = [] - - for key in datasets.keys(): - if dataset_name is not None and not key.startswith(dataset_name): - continue +async def add(data_path: Union[str, List[str]], dataset_name: str = None): + if isinstance(data_path, str): + # data_path is a data directory path + if "data://" in data_path: + return await add_data_directory(data_path.replace("data://", ""), dataset_name) + # data_path is a file path + if "file://" in data_path: + return await add([data_path], dataset_name) + # data_path is a text + else: + return await add_text(data_path, dataset_name) + + # data_path is a list of file paths + return await add_files(data_path, dataset_name) + +async def add_files(file_paths: List[str], dataset_name: str): + data_directory_path = infrastructure_config.get_config()["data_path"] + db_path = get_absolute_path("./data/cognee") + db_location = f"{db_path}/cognee.duckdb" - results.append(add(datasets[key], dataset_name = key)) + LocalStorage.ensure_directory_exists(db_path) - return await asyncio.gather(*results) + processed_file_paths = [] + for file_path in file_paths: + file_path = file_path.replace("file://", "") - db_path = get_absolute_path("./data/cognee") - db_location = f"{db_path}/cognee.duckdb" + if data_directory_path not in file_path: + file_name = file_path.split("/")[-1] + dataset_file_path = data_directory_path + "/" + dataset_name.replace('.', "/") + "/" + file_name - LocalStorage.ensure_directory_exists(db_path) + LocalStorage.copy_file(file_path, dataset_file_path) + processed_file_paths.append(dataset_file_path) + else: + processed_file_paths.append(file_path) db = duckdb.connect(db_location) @@ -81,10 +76,56 @@ def data_resources(file_paths: str): } run_info = pipeline.run( - data_resources(file_paths), + data_resources(processed_file_paths), table_name = "file_metadata", - dataset_name = dataset_name, + dataset_name = dataset_name.replace(" ", "_").replace(".", "_") if dataset_name is not None else "main_dataset", write_disposition = "merge", ) return run_info + +def extract_datasets_from_data(root_dir_path: str, parent_dir: str = "root"): + datasets = {} + + root_dir_path = root_dir_path.replace("file://", "") + + for file_or_dir in listdir(root_dir_path): + if path.isdir(path.join(root_dir_path, file_or_dir)): + dataset_name = file_or_dir if parent_dir == "root" else parent_dir + "." + file_or_dir + + nested_datasets = extract_datasets_from_data("file://" + path.join(root_dir_path, file_or_dir), dataset_name) + + for dataset in nested_datasets.keys(): + datasets[dataset] = nested_datasets[dataset] + else: + if parent_dir not in datasets: + datasets[parent_dir] = [] + + datasets[parent_dir].append(path.join(root_dir_path, file_or_dir)) + + return datasets + +async def add_data_directory(data_path: str, dataset_name: str = None): + datasets = extract_datasets_from_data(data_path) + + results = [] + + for key in datasets.keys(): + if dataset_name is None or key.startswith(dataset_name): + results.append(add(datasets[key], dataset_name = key)) + + return await asyncio.gather(*results) + +async def add_text(text: str, dataset_name: str): + data_directory_path = infrastructure_config.get_config()["data_path"] + + classified_data = ingestion.classify(text) + data_id = ingestion.identify(classified_data) + + storage_path = data_directory_path + "/" + dataset_name.replace(".", "/") + LocalStorage.ensure_directory_exists(storage_path) + + text_file_name = str(data_id) + ".txt" + LocalStorage(storage_path).store(text_file_name, classified_data.get_data()) + + return await add(["file://" + storage_path + "/" + text_file_name], dataset_name) diff --git a/cognee/api/v1/cognify/cognify.py b/cognee/api/v1/cognify/cognify.py index f6b2d9534..98e617a8c 100644 --- a/cognee/api/v1/cognify/cognify.py +++ b/cognee/api/v1/cognify/cognify.py @@ -3,7 +3,6 @@ from typing import List, Union import instructor from openai import OpenAI -from pypdf import PdfReader from cognee.modules.cognify.graph.add_classification_nodes import add_classification_nodes from cognee.modules.cognify.llm.label_content import label_content from cognee.modules.cognify.graph.add_label_nodes import add_label_nodes @@ -26,6 +25,8 @@ from cognee.infrastructure.databases.relational import DuckDBAdapter from cognee.modules.cognify.graph.add_document_node import add_document_node from cognee.modules.cognify.graph.initialize_graph import initialize_graph +from cognee.infrastructure.files.utils.guess_file_type import guess_file_type +from cognee.infrastructure.files.utils.extract_text_from_file import extract_text_from_file from cognee.infrastructure import infrastructure_config config = Config() @@ -35,7 +36,7 @@ USER_ID = "default_user" -async def cognify(datasets: Union[str, List[str]] = None, graphdatamodel: object = None): +async def cognify(datasets: Union[str, List[str]] = None, graph_data_model: object = None): """This function is responsible for the cognitive processing of the content.""" db = DuckDBAdapter() @@ -45,6 +46,7 @@ async def cognify(datasets: Union[str, List[str]] = None, graphdatamodel: object awaitables = [] + # datasets is a list of dataset names if isinstance(datasets, list): for dataset in datasets: awaitables.append(cognify(dataset)) @@ -52,17 +54,24 @@ async def cognify(datasets: Union[str, List[str]] = None, graphdatamodel: object graphs = await asyncio.gather(*awaitables) return graphs[0] - files_metadata = db.get_files_metadata(datasets) + # datasets is a dataset name string + added_datasets = db.get_datasets() + + files_metadata = [] + dataset_name = datasets.replace(".", "_").replace(" ", "_") + + for added_dataset in added_datasets: + if dataset_name in added_dataset: + files_metadata.extend(db.get_files_metadata(added_dataset)) awaitables = [] - await initialize_graph(USER_ID,graphdatamodel) + await initialize_graph(USER_ID, graph_data_model) for file_metadata in files_metadata: with open(file_metadata["file_path"], "rb") as file: - reader = PdfReader(stream = file) - pages = list(reader.pages[:3]) - text = "\n".join([page.extract_text().strip() for page in pages]) + file_type = guess_file_type(file) + text = extract_text_from_file(file, file_type) awaitables.append(process_text(text, file_metadata)) diff --git a/cognee/api/v1/config/__init__.py b/cognee/api/v1/config/__init__.py new file mode 100644 index 000000000..8dcce2096 --- /dev/null +++ b/cognee/api/v1/config/__init__.py @@ -0,0 +1 @@ +from .config import config diff --git a/cognee/api/v1/config/config.py b/cognee/api/v1/config/config.py new file mode 100644 index 000000000..333257687 --- /dev/null +++ b/cognee/api/v1/config/config.py @@ -0,0 +1,9 @@ +from typing import Optional +from cognee.infrastructure import infrastructure_config + +class config(): + @staticmethod + def data_path(data_path: Optional[str] = None) -> str: + infrastructure_config.set_config({ + "data_path": data_path + }) diff --git a/cognee/config.py b/cognee/config.py index bb97d4372..90db9e49e 100644 --- a/cognee/config.py +++ b/cognee/config.py @@ -19,14 +19,16 @@ class Config: """ Configuration for cognee - cognitive architecture framework. """ cognee_dir: str = field( - default_factory=lambda: os.getenv("COG_ARCH_DIR", "cognitive_achitecture") + default_factory=lambda: os.getenv("COG_ARCH_DIR", "cognee") ) config_path: str = field( default_factory=lambda: os.path.join( - os.getenv("COG_ARCH_DIR", "cognitive_achitecture"), "config" + os.getenv("COG_ARCH_DIR", "cognee"), "config" ) ) + data_path = os.getenv("DATA_PATH", str(Path(__file__).resolve().parent.parent / ".data")) + db_path = str(Path(__file__).resolve().parent / "data/system") vectordb: str = os.getenv("VECTORDB", "weaviate") @@ -59,7 +61,7 @@ class Config: graphistry_password = os.getenv("GRAPHISTRY_PASSWORD") # Embedding parameters - embedding_model: str = "openai" + embedding_model: str = "BAAI/bge-large-en-v1.5" embedding_dim: int = 1536 embedding_chunk_size: int = 300 diff --git a/cognee/infrastructure/InfrastructureConfig.py b/cognee/infrastructure/InfrastructureConfig.py index 22a9a7d6b..abd7f02a1 100644 --- a/cognee/infrastructure/InfrastructureConfig.py +++ b/cognee/infrastructure/InfrastructureConfig.py @@ -1,14 +1,16 @@ from cognee.config import Config from .databases.relational import SqliteEngine, DatabaseEngine -from .databases.vector import WeaviateAdapter, VectorDBInterface +from .databases.vector.weaviate_db import WeaviateAdapter +from .databases.vector.vector_db_interface import VectorDBInterface +from .databases.vector.embeddings.DefaultEmbeddingEngine import DefaultEmbeddingEngine from .llm.llm_interface import LLMInterface from .llm.openai.adapter import OpenAIAdapter -from .databases.vector import WeaviateAdapter, VectorDBInterface, DefaultEmbeddingEngine config = Config() config.load() class InfrastructureConfig(): + data_path: str = config.data_path database_engine: DatabaseEngine = None vector_engine: VectorDBInterface = None llm_engine: LLMInterface = None @@ -28,14 +30,23 @@ def get_config(self) -> dict: ) return { - "database_engine": self.database_engine, + "data_path": self.data_path, + "llm_engine": self.llm_engine, "vector_engine": self.vector_engine, - "llm_engine": self.llm_engine + "database_engine": self.database_engine, } def set_config(self, new_config: dict): - self.database_engine = new_config["database_engine"] - self.vector_engine = new_config["vector_engine"] - self.llm_engine = new_config["llm_engine"] + if "data_path" in new_config: + self.data_path = new_config["data_path"] + + if "database_engine" in new_config: + self.database_engine = new_config["database_engine"] + + if "vector_engine" in new_config: + self.vector_engine = new_config["vector_engine"] + + if "llm_engine" in new_config: + self.llm_engine = new_config["llm_engine"] infrastructure_config = InfrastructureConfig() diff --git a/cognee/infrastructure/data/__init__.py b/cognee/infrastructure/data/__init__.py index 86683ba77..6aaaf6b41 100644 --- a/cognee/infrastructure/data/__init__.py +++ b/cognee/infrastructure/data/__init__.py @@ -1,4 +1,3 @@ from .models.Data import Data from .models.Dataset import Dataset from .models.DatasetData import DatasetData -from .add_data_to_dataset import add_data_to_dataset diff --git a/cognee/infrastructure/files/utils/extract_keywords.py b/cognee/infrastructure/data/utils/extract_keywords.py similarity index 85% rename from cognee/infrastructure/files/utils/extract_keywords.py rename to cognee/infrastructure/data/utils/extract_keywords.py index 3aa633a96..c69f590e1 100644 --- a/cognee/infrastructure/files/utils/extract_keywords.py +++ b/cognee/infrastructure/data/utils/extract_keywords.py @@ -2,6 +2,9 @@ from sklearn.feature_extraction.text import TfidfVectorizer def extract_keywords(text: str) -> list[str]: + if len(text) == 0: + raise ValueError("extract_keywords cannot extract keywords from empty text.") + tokens = nltk.word_tokenize(text) tags = nltk.pos_tag(tokens) diff --git a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py index 3192cb5ef..4dd5ad4c0 100644 --- a/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/DefaultEmbeddingEngine.py @@ -1,13 +1,14 @@ from typing import List from fastembed import TextEmbedding +from cognee.config import Config +from cognee.root_dir import get_absolute_path from .EmbeddingEngine import EmbeddingEngine -from cognitive_architecture.config import Config config = Config() config.load() class DefaultEmbeddingEngine(EmbeddingEngine): async def embed_text(self, text: List[str]) -> List[float]: - embedding_model = TextEmbedding(model_name = config.embedding_model) + embedding_model = TextEmbedding(model_name = config.embedding_model, cache_dir = get_absolute_path("cache/embeddings")) embeddings_list = list(map(lambda embedding: embedding.tolist(), embedding_model.embed(text))) return embeddings_list diff --git a/cognee/infrastructure/files/storage/LocalStorage.py b/cognee/infrastructure/files/storage/LocalStorage.py index ddabc6f49..766e82e77 100644 --- a/cognee/infrastructure/files/storage/LocalStorage.py +++ b/cognee/infrastructure/files/storage/LocalStorage.py @@ -1,5 +1,6 @@ import os -from typing import BinaryIO +import shutil +from typing import BinaryIO, Union from .StorageManager import Storage class LocalStorage(Storage): @@ -8,13 +9,17 @@ class LocalStorage(Storage): def __init__(self, storage_path: str): self.storage_path = storage_path - def store(self, file_path: str, data: BinaryIO): + def store(self, file_path: str, data: Union[BinaryIO, str]): full_file_path = self.storage_path + "/" + file_path LocalStorage.ensure_directory_exists(self.storage_path) - with open(full_file_path, "wb") as f: - f.write(data.read()) + with open( + full_file_path, + mode = "w" if isinstance(data, str) else "wb", + encoding = "utf-8" if isinstance(data, str) else None + ) as f: + f.write(data if isinstance(data, str) else data.read()) def retrieve(self, file_path: str): full_file_path = self.storage_path + "/" + file_path @@ -30,8 +35,6 @@ def ensure_directory_exists(file_path: str): def remove(self, file_path: str): os.remove(self.storage_path + "/" + file_path) - # def get_directory(self, file_path: str): - # [path, __] = file_path.split(".") - # directory = "/".join(path.split("/")[:-1]) - - # return directory if directory != "" else None + @staticmethod + def copy_file(source_file_path: str, destination_file_path: str): + return shutil.copy2(source_file_path, destination_file_path) diff --git a/cognee/infrastructure/files/utils/extract_text_from_file.py b/cognee/infrastructure/files/utils/extract_text_from_file.py new file mode 100644 index 000000000..2e413ab6a --- /dev/null +++ b/cognee/infrastructure/files/utils/extract_text_from_file.py @@ -0,0 +1,11 @@ +from typing import BinaryIO +from pypdf import PdfReader + +def extract_text_from_file(file: BinaryIO, file_type) -> str: + if file_type.extension == "pdf": + reader = PdfReader(stream = file) + pages = list(reader.pages[:3]) + return "\n".join([page.extract_text().strip() for page in pages]) + + if file_type.extension == "txt": + return file.read().decode("utf-8") diff --git a/cognee/infrastructure/files/utils/get_file_metadata.py b/cognee/infrastructure/files/utils/get_file_metadata.py index 9fda433fa..2b9d6ed0a 100644 --- a/cognee/infrastructure/files/utils/get_file_metadata.py +++ b/cognee/infrastructure/files/utils/get_file_metadata.py @@ -1,13 +1,7 @@ from typing import BinaryIO, TypedDict -import filetype -from pypdf import PdfReader -from .extract_keywords import extract_keywords - -class FileTypeException(Exception): - message: str - - def __init__(self, message: str): - self.message = message +from cognee.infrastructure.data.utils.extract_keywords import extract_keywords +from .extract_text_from_file import extract_text_from_file +from .guess_file_type import guess_file_type class FileMetadata(TypedDict): @@ -17,18 +11,12 @@ class FileMetadata(TypedDict): keywords: list[str] def get_file_metadata(file: BinaryIO) -> FileMetadata: - file_type = filetype.guess(file) - - if file_type is None: - raise FileTypeException("Unknown file detected.") - - keywords: list = [] + file.seek(0) + file_type = guess_file_type(file) - if file_type.extension == "pdf": - reader = PdfReader(stream = file) - pages = list(reader.pages[:3]) - text = "\n".join([page.extract_text().strip() for page in pages]) - keywords = extract_keywords(text) + file.seek(0) + file_text = extract_text_from_file(file, file_type) + keywords = extract_keywords(file_text) file_path = file.name file_name = file_path.split("/")[-1].split(".")[0] diff --git a/cognee/infrastructure/files/utils/guess_file_type.py b/cognee/infrastructure/files/utils/guess_file_type.py new file mode 100644 index 000000000..923833bdc --- /dev/null +++ b/cognee/infrastructure/files/utils/guess_file_type.py @@ -0,0 +1,31 @@ +from typing import BinaryIO +import filetype +from .is_text_content import is_text_content + +class FileTypeException(Exception): + message: str + + def __init__(self, message: str): + self.message = message + +class TxtFileType(filetype.Type): + MIME = "text/plain" + EXTENSION = "txt" + + def __init__(self): + super(TxtFileType, self).__init__(mime = TxtFileType.MIME, extension = TxtFileType.EXTENSION) + + def match(self, buf): + return is_text_content(buf) + +txt_file_type = TxtFileType() + +filetype.add_type(txt_file_type) + +def guess_file_type(file: BinaryIO) -> filetype.Type: + file_type = filetype.guess(file) + + if file_type is None: + raise FileTypeException("Unknown file detected.") + + return file_type diff --git a/cognee/infrastructure/files/utils/is_text_content.py b/cognee/infrastructure/files/utils/is_text_content.py new file mode 100644 index 000000000..b30327f0f --- /dev/null +++ b/cognee/infrastructure/files/utils/is_text_content.py @@ -0,0 +1,24 @@ +def is_text_content(content): + # Check for null bytes + if b'\0' in content: + return False + + # Check for common text encodings (BOMs) + if content.startswith((b'\xEF\xBB\xBF', # UTF-8 + b'\xFF\xFE', # UTF-16 LE + b'\xFE\xFF', # UTF-16 BE + b'\x00\x00\xFE\xFF', # UTF-32 LE + b'\xFF\xFE\x00\x00', # UTF-32 BE + )): + return True + + # Check for ASCII characters + if all(0x20 <= byte <= 0x7E or byte in (b'\n', b'\r', b'\t') for byte in content): + return True + + # Check for common line break characters + if b'\n' in content or b'\r' in content: + return True + + # If no obvious indicators found, assume it's a text file + return True diff --git a/cognee/modules/cognify/graph/add_node_connections.py b/cognee/modules/cognify/graph/add_node_connections.py index 9f7f47f41..ae6a0e23b 100644 --- a/cognee/modules/cognify/graph/add_node_connections.py +++ b/cognee/modules/cognify/graph/add_node_connections.py @@ -124,7 +124,7 @@ async def main(): connect_nodes_in_graph(graph, relationships) - from cognitive_architecture.utils import render_graph + from cognee.utils import render_graph graph_url = await render_graph(graph, graph_type="networkx") diff --git a/cognee/modules/cognify/llm/resolve_cross_graph_references.py b/cognee/modules/cognify/llm/resolve_cross_graph_references.py index 55ede0e92..653b51bc5 100644 --- a/cognee/modules/cognify/llm/resolve_cross_graph_references.py +++ b/cognee/modules/cognify/llm/resolve_cross_graph_references.py @@ -1,5 +1,4 @@ from typing import Dict, List -from cognee.infrastructure.databases.vector import get_vector_database from cognee.infrastructure import infrastructure_config async def resolve_cross_graph_references(nodes_by_layer: Dict): diff --git a/cognee/modules/ingestion/__init__.py b/cognee/modules/ingestion/__init__.py index 2846a949a..6b0049b52 100644 --- a/cognee/modules/ingestion/__init__.py +++ b/cognee/modules/ingestion/__init__.py @@ -1,3 +1,2 @@ from .classify import classify from .identify import identify -from .save import save diff --git a/cognee/infrastructure/data/add_data_to_dataset.py b/cognee/modules/ingestion/add_data_to_dataset.py similarity index 96% rename from cognee/infrastructure/data/add_data_to_dataset.py rename to cognee/modules/ingestion/add_data_to_dataset.py index 1aa5d754a..9dbb5e511 100644 --- a/cognee/infrastructure/data/add_data_to_dataset.py +++ b/cognee/modules/ingestion/add_data_to_dataset.py @@ -1,8 +1,8 @@ import logging -from . import Dataset, Data from cognee.infrastructure import infrastructure_config -from cognee.infrastructure.databases.relational import DatabaseEngine +from cognee.infrastructure.data import Dataset, Data from cognee.infrastructure.files import remove_file_from_storage +from cognee.infrastructure.databases.relational import DatabaseEngine logger = logging.getLogger(__name__) diff --git a/cognee/modules/ingestion/classify.py b/cognee/modules/ingestion/classify.py index 0eb807f72..b13db649b 100644 --- a/cognee/modules/ingestion/classify.py +++ b/cognee/modules/ingestion/classify.py @@ -10,4 +10,4 @@ def classify(data: Union[str, BinaryIO]): if isinstance(data, BufferedReader): return create_binary_data(data) - raise IngestionException(f"Data sent to cognee.classify(data: any) not supported: {type(data)}") + raise IngestionException(f"Type of data sent to cognee.add(data_path: string | List[string]) not supported: {type(data)}") diff --git a/cognee/modules/ingestion/data_types/BinaryData.py b/cognee/modules/ingestion/data_types/BinaryData.py index bd949ae5b..82afb6dd1 100644 --- a/cognee/modules/ingestion/data_types/BinaryData.py +++ b/cognee/modules/ingestion/data_types/BinaryData.py @@ -17,11 +17,6 @@ def get_identifier(self): return self.metadata["mime_type"] + "_" + "|".join(self.metadata["keywords"]) - def get_extension(self): - self.ensure_metadata() - - return self.metadata["extension"] - def ensure_metadata(self): if self.metadata is None: self.metadata = get_file_metadata(self.data) diff --git a/cognee/modules/ingestion/data_types/IngestionData.py b/cognee/modules/ingestion/data_types/IngestionData.py index ee9514bc8..147dbda4e 100644 --- a/cognee/modules/ingestion/data_types/IngestionData.py +++ b/cognee/modules/ingestion/data_types/IngestionData.py @@ -2,10 +2,9 @@ class IngestionData(Protocol): data: str | BinaryIO = None - metadata: dict = None def get_data(self): - pass + raise NotImplementedError() - def get_extension(self): - pass + def get_identifier(self): + raise NotImplementedError() diff --git a/cognee/modules/ingestion/data_types/TextData.py b/cognee/modules/ingestion/data_types/TextData.py index 9ec302047..8b152e986 100644 --- a/cognee/modules/ingestion/data_types/TextData.py +++ b/cognee/modules/ingestion/data_types/TextData.py @@ -1,3 +1,5 @@ +from typing import BinaryIO +from cognee.infrastructure.data.utils.extract_keywords import extract_keywords from .IngestionData import IngestionData def create_text_data(data: str): @@ -6,11 +8,13 @@ def create_text_data(data: str): class TextData(IngestionData): data: str = None - def __init__(self, data: str): + def __init__(self, data: BinaryIO): self.data = data + def get_identifier(self): + keywords = extract_keywords(self.data) + + return "text/plain" + "_" + "|".join(keywords) + def get_data(self): return self.data - - def get_chunks(self): - pass diff --git a/cognee/modules/ingestion/save.py b/cognee/modules/ingestion/save.py index 5ba47e0e5..ba5b465a1 100644 --- a/cognee/modules/ingestion/save.py +++ b/cognee/modules/ingestion/save.py @@ -1,7 +1,7 @@ import asyncio from uuid import UUID, uuid4 -from cognee.infrastructure.files import add_file_to_storage -from cognee.infrastructure.data import add_data_to_dataset, Data, Dataset +from cognee.infrastructure.data import Data, Dataset +from .add_data_to_dataset import add_data_to_dataset from .data_types import IngestionData async def save(dataset_id: UUID, dataset_name: str, data_id: UUID, data: IngestionData): @@ -9,8 +9,6 @@ async def save(dataset_id: UUID, dataset_name: str, data_id: UUID, data: Ingesti promises = [] - # promises.append(add_file_to_storage(file_path, data.get_data())) - promises.append( add_data_to_dataset( Dataset( diff --git a/notebooks/full_run.ipynb b/notebooks/full_run.ipynb index 4541db14a..4b783f2f0 100644 --- a/notebooks/full_run.ipynb +++ b/notebooks/full_run.ipynb @@ -7,19 +7,74 @@ "metadata": {}, "outputs": [], "source": [ - "from cognee import add, cognify, search\n", + "from cognee import config, add, cognify, search\n", "from cognee.utils import render_graph\n", "from os import listdir, path\n", "\n", - "data_path = path.abspath(\"../.data\")\n", + "data_directory_path = path.abspath(\"../.data\")\n", "\n", - "print(data_path)\n", + "print(data_directory_path)\n", "\n", - "await add(path.abspath(\"../.data\"), \"izmene\")\n", + "config.data_path(data_directory_path)\n", "\n", - "graph = await cognify(\"izmene\")\n", + "# dataset_name = \"pravilnik.energetska efikasnost.sertifikati\"\n", + "# await add(\"file://\" + path.abspath(\"../.test_data/062c22df-d99b-599f-90cd-2d325c8bcf69.txt\"), dataset_name)\n", "\n", - "await render_graph(graph, graph_type=\"networkx\")" + "\n", + "dataset_name = \"izmene\"\n", + "await add(\"data://\" + path.abspath(\"../.data\"), dataset_name)\n", + "\n", + "# test_text = \"\"\"A quantum computer is a computer that takes advantage of quantum mechanical phenomena.\n", + "# At small scales, physical matter exhibits properties of both particles and waves, and quantum computing leverages this behavior, specifically quantum superposition and entanglement, using specialized hardware that supports the preparation and manipulation of quantum states.\n", + "# Classical physics cannot explain the operation of these quantum devices, and a scalable quantum computer could perform some calculations exponentially faster (with respect to input size scaling)[2] than any modern \"classical\" computer. In particular, a large-scale quantum computer could break widely used encryption schemes and aid physicists in performing physical simulations; however, the current state of the technology is largely experimental and impractical, with several obstacles to useful applications. Moreover, scalable quantum computers do not hold promise for many practical tasks, and for many important tasks quantum speedups are proven impossible.\n", + "# The basic unit of information in quantum computing is the qubit, similar to the bit in traditional digital electronics. Unlike a classical bit, a qubit can exist in a superposition of its two \"basis\" states. When measuring a qubit, the result is a probabilistic output of a classical bit, therefore making quantum computers nondeterministic in general. If a quantum computer manipulates the qubit in a particular way, wave interference effects can amplify the desired measurement results. The design of quantum algorithms involves creating procedures that allow a quantum computer to perform calculations efficiently and quickly.\n", + "# Physically engineering high-quality qubits has proven challenging. If a physical qubit is not sufficiently isolated from its environment, it suffers from quantum decoherence, introducing noise into calculations. Paradoxically, perfectly isolating qubits is also undesirable because quantum computations typically need to initialize qubits, perform controlled qubit interactions, and measure the resulting quantum states. Each of those operations introduces errors and suffers from noise, and such inaccuracies accumulate.\n", + "# In principle, a non-quantum (classical) computer can solve the same computational problems as a quantum computer, given enough time. Quantum advantage comes in the form of time complexity rather than computability, and quantum complexity theory shows that some quantum algorithms for carefully selected tasks require exponentially fewer computational steps than the best known non-quantum algorithms. Such tasks can in theory be solved on a large-scale quantum computer whereas classical computers would not finish computations in any reasonable amount of time. However, quantum speedup is not universal or even typical across computational tasks, since basic tasks such as sorting are proven to not allow any asymptotic quantum speedup. Claims of quantum supremacy have drawn significant attention to the discipline, but are demonstrated on contrived tasks, while near-term practical use cases remain limited.\n", + "# \"\"\"\n", + "\n", + "# dataset_name = \"pravilnik.energetska efikasnost\"\n", + "# await add(test_text, dataset_name)\n", + "\n", + "\n", + "graph = await cognify(dataset_name)\n", + "\n", + "await render_graph(graph, graph_type = \"networkx\")\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "44603a2a", + "metadata": {}, + "outputs": [], + "source": [ + "from cognee import list_datasets\n", + "\n", + "print(list_datasets())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "66ad66ca", + "metadata": {}, + "outputs": [], + "source": [ + "import duckdb\n", + "from cognee.root_dir import get_absolute_path\n", + "\n", + "db_path = get_absolute_path(\"./data/cognee\")\n", + "db_location = db_path + \"/cognee.duckdb\"\n", + "print(db_location)\n", + "\n", + "db = duckdb.connect(db_location)\n", + "\n", + "izmene = db.sql(f\"SELECT * FROM pravilnik_energetska_efikasnost_sertifikati.file_metadata;\")\n", + "print(izmene)\n", + "\n", + "# pravilnik = db.sql(f\"SELECT * FROM pravilnik.file_metadata;\")\n", + "\n", + "# print(pravilnik)" ] } ],