diff --git a/docs/404.html b/docs/404.html index 0ec8b4be..7bbf3e80 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ traits.build - 1.1.0 + 2.0.0 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 332d3aa6..3aa567ab 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 diff --git a/docs/authors.html b/docs/authors.html index 4ec75369..d3b6ce07 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -108,13 +108,13 @@

Citation

Falster D, Wenk E, Yang S, Kar F (2024). traits.build: A workflow for harmonising trait data from diverse sources into a documented standard structure. -R package version 1.1.0, http://traitecoevo.github.io/traits.build/. +R package version 2.0.0, http://traitecoevo.github.io/traits.build/. 

@Manual{,
   title = {traits.build: A workflow for harmonising trait data from diverse sources into a documented standard structure},
   author = {Daniel Falster and Elizabeth Wenk and Sophie Yang and Fonti Kar},
   year = {2024},
-  note = {R package version 1.1.0},
+  note = {R package version 2.0.0},
   url = {http://traitecoevo.github.io/traits.build/},
 }
diff --git a/docs/index.html b/docs/index.html index 7d34c365..8881f8f0 100644 --- a/docs/index.html +++ b/docs/index.html @@ -33,7 +33,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -193,7 +193,8 @@

Code of conduct

Citation

-

We are developing a paper describing the traits.build workflow. In the meantime, please cite the following publication

+

A publication describing the traits.build workflow: > Wenk E, Bal P, Coleman D, Gallagher R, Yang S, Falster D, (2024) Traits.build: A data model, workflow and R package for building harmonised ecological trait databases. Ecological Informatics 83: 102773. DOI: 10.1016/j.ecoinf.2024.102773

+

A publication describing the biggest database using the traits.build workflow:

Falster D, Gallagher R, Wenk, E et al. (2021) AusTraits, a curated plant trait database for the Australian flora. Scientific Data 8: 254. DOI: 10.1038/s41597-021-01006-6

@@ -250,6 +251,7 @@

Dev status

diff --git a/docs/news/index.html b/docs/news/index.html index ddcfeaf4..6f8b507a 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -72,6 +72,35 @@

Changelog

Source: NEWS.md +
+

traits.build 2.0.0

+

traits.build 1.1.0

diff --git a/docs/reference/build_combine.html b/docs/reference/build_combine.html index 55d0bcb2..3a397a00 100644 --- a/docs/reference/build_combine.html +++ b/docs/reference/build_combine.html @@ -1,6 +1,7 @@ -Combine all the AusTraits studies into the compiled AusTraits database — build_combine • traits.buildCombine all the AusTraits studies into the compiled AusTraits database — build_combine • traits.build @@ -18,7 +19,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -70,13 +71,14 @@

Combine all the AusTraits studies into the compiled AusTraits database

- Source: R/process.R + Source: R/utils.R
-

`build_combine` compiles all the loaded studies into a single AusTraits +

build_combine compiles all the loaded studies into a single AusTraits database object as a large list.

+

[Deprecated]

diff --git a/docs/reference/build_setup_pipeline.html b/docs/reference/build_setup_pipeline.html index 7a97725d..2f9d17cc 100644 --- a/docs/reference/build_setup_pipeline.html +++ b/docs/reference/build_setup_pipeline.html @@ -1,5 +1,5 @@ -Update the `remake.yml` file with new studies — build_setup_pipeline • traits.buildUpdate the remake.yml file with new studies — build_setup_pipeline • traits.buildFormat a tree structure from a vector — create_tree_branch • traits.buildFormat a tree structure from a vector — create_tree_branch • traits.buildBuild dataset — dataset_build • traits.build @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -76,7 +76,7 @@

Build dataset

Build specified dataset. This function completes three steps, which can be executed separately if desired: -`dataset_configure`, `dataset_process`, `dataset_update_taxonomy`

+dataset_configure, dataset_process, dataset_update_taxonomy

@@ -99,15 +99,15 @@

Arguments

filename_data_raw
-

Raw `data.csv` file for any given study

+

Raw data.csv file for any given study

definitions
-

Definitions read in from the `traits.yml`

+

Definitions read in from the traits.yml

unit_conversion_functions
-

`unit_conversion.csv` file read in from the config folder

+

unit_conversion.csv file read in from the config folder

schema
diff --git a/docs/reference/dataset_configure.html b/docs/reference/dataset_configure.html index 701b8c38..b73d8334 100644 --- a/docs/reference/dataset_configure.html +++ b/docs/reference/dataset_configure.html @@ -1,10 +1,10 @@ -Configure AusTraits database object — dataset_configure • traits.buildConfigure AusTraits database object — dataset_configure • traits.build @@ -22,7 +22,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -79,12 +79,12 @@

Configure AusTraits database object

-

Creates the config object which gets passed onto `dataset_process`. The config list contains +

Creates the config object which gets passed onto dataset_process. The config list contains the subset of definitions and unit conversions for those traits for a each study. -`dataset_configure` is used in the `remake::make` process to configure individual studies mapping the +dataset_configure is used in the remake::make process to configure individual studies mapping the individual traits found in that study along with any relevant unit conversions -and definitions. `dataset_configure` and `dataset_process` are applied to every study -in the `remake.yml` file.

+and definitions. dataset_configure and dataset_process are applied to every study +in the remake.yml file.

@@ -98,14 +98,16 @@

Arguments

definitions
-

Definitions read in from the `traits.yml`

+

Definitions read in from the traits.yml

Value

-

List with `dataset_id`, `metadata`, `definitions` and `unit_conversion_functions`

+

List with dataset_id, metadata, definitions and unit_conversion_functions

+ +
diff --git a/docs/reference/dataset_find_taxon.html b/docs/reference/dataset_find_taxon.html index eb9be284..c005105a 100644 --- a/docs/reference/dataset_find_taxon.html +++ b/docs/reference/dataset_find_taxon.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/dataset_process.html b/docs/reference/dataset_process.html index d53871c3..7bca674e 100644 --- a/docs/reference/dataset_process.html +++ b/docs/reference/dataset_process.html @@ -1,7 +1,7 @@ -Load Dataset — dataset_process • traits.buildLoad Dataset — dataset_process • traits.build @@ -19,7 +19,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -76,9 +76,9 @@

Load Dataset

-

`dataset_process` is used to load individual studies using the config file generated -from `dataset_configure()`. `dataset_configure` and `dataset_process` are applied to every -study in the `remake.yml` file.

+

dataset_process is used to load individual studies using the config file generated +from dataset_configure(). dataset_configure and dataset_process are applied to every +study in the remake.yml file.

@@ -95,11 +95,11 @@

Load Dataset

Arguments

filename_data_raw
-

Raw `data.csv` file for any given study

+

Raw data.csv file for any given study

config_for_dataset
-

Config settings generated from `dataset_configure()`

+

Config settings generated from dataset_configure()

schema
@@ -111,7 +111,7 @@

Arguments

unit_conversion_functions
-

`unit_conversion.csv` file read in from the config folder

+

unit_conversion.csv file read in from the config folder

filter_missing_values
diff --git a/docs/reference/dataset_report.html b/docs/reference/dataset_report.html index 4e5a82de..809e25b4 100644 --- a/docs/reference/dataset_report.html +++ b/docs/reference/dataset_report.html @@ -1,5 +1,5 @@ -Build reports for listed datasets — dataset_report • traits.buildBuild reports for listed datasets — dataset_report • traits.buildTest whether specified `dataset_id` has the correct setup — dataset_test • traits.buildTest whether specified dataset_id has the correct setup — dataset_test • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Test whether specified `dataset_id` has the correct setup

+

Test whether specified dataset_id has the correct setup

Source: R/testdata.R
-

Run tests to ensure that specified `dataset_id` has the correct setup.

+

Run tests to ensure that specified dataset_id has the correct setup.

@@ -89,7 +89,7 @@

Test whether specified `dataset_id` has the correct setup

Arguments

dataset_ids
-

Vector of `dataset_id` for sources to be tested

+

Vector of dataset_id for sources to be tested

path_config
@@ -101,7 +101,7 @@

Arguments

reporter
-

`testthat` reporter to use to summarise output

+

testthat reporter to use to summarise output

diff --git a/docs/reference/dataset_test_worker.html b/docs/reference/dataset_test_worker.html index afb6b20b..ce265eeb 100644 --- a/docs/reference/dataset_test_worker.html +++ b/docs/reference/dataset_test_worker.html @@ -1,5 +1,5 @@ -Test whether specified `dataset_id` has the correct setup — dataset_test_worker • traits.buildTest whether specified dataset_id has the correct setup — dataset_test_worker • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Test whether specified `dataset_id` has the correct setup

+

Test whether specified dataset_id has the correct setup

Source: R/testdata.R
-

Run tests to ensure that specified `dataset_id` has the correct setup.

+

Run tests to ensure that specified dataset_id has the correct setup.

@@ -90,7 +90,7 @@

Test whether specified `dataset_id` has the correct setup

Arguments

test_dataset_ids
-

Vector of `dataset_id` for sources to be tested

+

Vector of dataset_id for sources to be tested

path_config
diff --git a/docs/reference/dataset_update_taxonomy.html b/docs/reference/dataset_update_taxonomy.html index d7122238..6905ab3b 100644 --- a/docs/reference/dataset_update_taxonomy.html +++ b/docs/reference/dataset_update_taxonomy.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/figures/lifecycle-deprecated.svg b/docs/reference/figures/lifecycle-deprecated.svg new file mode 100644 index 00000000..b61c57c3 --- /dev/null +++ b/docs/reference/figures/lifecycle-deprecated.svg @@ -0,0 +1,21 @@ + + lifecycle: deprecated + + + + + + + + + + + + + + + lifecycle + + deprecated + + diff --git a/docs/reference/figures/lifecycle-experimental.svg b/docs/reference/figures/lifecycle-experimental.svg new file mode 100644 index 00000000..5d88fc2c --- /dev/null +++ b/docs/reference/figures/lifecycle-experimental.svg @@ -0,0 +1,21 @@ + + lifecycle: experimental + + + + + + + + + + + + + + + lifecycle + + experimental + + diff --git a/docs/reference/figures/lifecycle-stable.svg b/docs/reference/figures/lifecycle-stable.svg new file mode 100644 index 00000000..9bf21e76 --- /dev/null +++ b/docs/reference/figures/lifecycle-stable.svg @@ -0,0 +1,29 @@ + + lifecycle: stable + + + + + + + + + + + + + + + + lifecycle + + + + stable + + + diff --git a/docs/reference/figures/lifecycle-superseded.svg b/docs/reference/figures/lifecycle-superseded.svg new file mode 100644 index 00000000..db8d757f --- /dev/null +++ b/docs/reference/figures/lifecycle-superseded.svg @@ -0,0 +1,21 @@ + + lifecycle: superseded + + + + + + + + + + + + + + + lifecycle + + superseded + + diff --git a/docs/reference/get_schema.html b/docs/reference/get_schema.html index b327764c..2f81c484 100644 --- a/docs/reference/get_schema.html +++ b/docs/reference/get_schema.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/get_unit_conversions.html b/docs/reference/get_unit_conversions.html index d767038a..07327a61 100644 --- a/docs/reference/get_unit_conversions.html +++ b/docs/reference/get_unit_conversions.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/index.html b/docs/reference/index.html index c82c566b..a76c6dde 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -78,11 +78,7 @@

Building a dataset or compilation

build_setup_pipeline()

-

Update the `remake.yml` file with new studies

- -

build_combine()

- -

Combine all the AusTraits studies into the compiled AusTraits database

+

Update the remake.yml file with new studies

build_add_version()

@@ -130,28 +126,28 @@

Creating metadata files dataset_test()

-

Test whether specified `dataset_id` has the correct setup

+

Test whether specified dataset_id has the correct setup

metadata_create_template()

-

Create a template of file `metadata.yml` for specified `dataset_id`

+

Create a template of file metadata.yml for specified dataset_id

metadata_check_custom_R_code()

-

Check the output of running `custom_R_code` specified in -the metadata for specified `dataset_id`

+

Check the output of running custom_R_code specified in +the metadata for specified dataset_id

metadata_add_traits()

-

For specified `dataset_id`, populate columns for traits into metadata

+

For specified dataset_id, populate columns for traits into metadata

metadata_add_contexts()

-

For specified `dataset_id` import context data from a dataframe

+

For specified dataset_id import context data from a dataframe

metadata_add_locations()

-

For specified `dataset_id` import location data from a dataframe

+

For specified dataset_id import location data from a dataframe

metadata_add_source_bibtex()

@@ -159,11 +155,11 @@

Creating metadata files metadata_add_source_doi()

-

Adds citation details from a doi to a metadata file for a `dataset_id`

+

Adds citation details from a doi to a metadata file for a dataset_id

metadata_add_substitution()

-

Add a categorical trait value substitution into a metadata file for a `dataset_id`

+

Add a categorical trait value substitution into a metadata file for a dataset_id

metadata_add_substitutions_list()

@@ -175,27 +171,27 @@

Creating metadata files metadata_add_taxonomic_change()

-

Add a taxonomic change into the `metadata.yml` file for a `dataset_id`

+

Add a taxonomic change into the metadata.yml file for a dataset_id

metadata_add_taxonomic_changes_list()

-

Add a list of taxonomic updates into a metadata file for a `dataset_id`

+

Add a list of taxonomic updates into a metadata file for a dataset_id

metadata_find_taxonomic_change()

-

Find `dataset_id`'s with a given taxonomic change

+

Find dataset_id's with a given taxonomic change

metadata_remove_taxonomic_change()

-

Remove a taxonomic change from a yaml file for a `dataset_id`

+

Remove a taxonomic change from a yaml file for a dataset_id

metadata_update_taxonomic_change()

-

Update a taxonomic change into a yaml file for a `dataset_id`

+

Update a taxonomic change into a yaml file for a dataset_id

metadata_exclude_observations()

-

Exclude observations in a yaml file for a `dataset_id`

+

Exclude observations in a yaml file for a dataset_id

dataset_find_taxon()

@@ -211,11 +207,11 @@

Reading & writing files read_metadata()

-

Read in a `metadata.yml` file for a study

+

Read in a metadata.yml file for a study

write_metadata()

-

Write `metadata.yml` for a study

+

Write metadata.yml for a study

read_yaml

@@ -233,10 +229,6 @@

Working with outputs

Functions to work with compiled traits.build objects.

-

plot_trait_distribution_beeswarm()

- -

Beeswarm Trait distribution

-

check_pivot_duplicates()

Identify duplicates preventing pivoting wider

@@ -244,14 +236,6 @@

Working with outputs check_pivot_wider()

Test whether a dataset can pivot wider

- -

db_traits_pivot_longer()

- -

Pivot wide format data into a long format

- -

db_traits_pivot_wider()

- -

Pivot long format data into a wide format

Building a compilation (private)

Private functions that are called in the background when building individual datasets and entire compilation. These are only of interest to developers.

@@ -332,11 +316,11 @@

Building a compilation (private)

dataset_test_worker()

-

Test whether specified `dataset_id` has the correct setup

+

Test whether specified dataset_id has the correct setup

metadata_path_dataset_id()

-

Path to the `metadata.yml` file for specified `dataset_id`

+

Path to the metadata.yml file for specified dataset_id

metadata_user_select_column()

@@ -348,11 +332,11 @@

Building a compilation (private)

read_metadata_dataset()

-

Read the `metadata.yml` file for specified `dataset_id`

+

Read the metadata.yml file for specified dataset_id

write_metadata_dataset()

-

Write the YAML representation of `metadata.yml` for specified `dataset_id` to +

Write the YAML representation of metadata.yml for specified dataset_id to file data/dataset_id/metadata.yml

Diverse utility functions

@@ -382,10 +366,6 @@

Diverse utility functions util_df_convert_character()

Convert all columns in data frame to character

- -

util_df_to_list()

- -

Convert dataframe to list

util_extract_list_element()

@@ -398,14 +378,6 @@

Diverse utility functions util_list_to_bib()

Convert a list of elements into a BibEntry object

- -

util_list_to_df1()

- -

Convert a list with single entries to dataframe

- -

util_list_to_df2()

- -

Convert a list of lists to dataframe

util_replace_null()

@@ -458,6 +430,26 @@

Functions used when writin

notes_random_string()

Create a string of random letters

+ +

Deprecated function names

+

Functions that have been moved from traits.build to austraits and renamed. Deprecated names still work.

+ + +

build_combine()

+ +

Combine all the AusTraits studies into the compiled AusTraits database

+ +

util_df_to_list()

+ +

Convert dataframe to list

+ +

util_list_to_df1()

+ +

Convert a list with single entries to dataframe

+ +

util_list_to_df2()

+ +

Convert a list of lists to dataframe

@@ -70,15 +70,15 @@
-

Add a categorical trait value substitution into a metadata file for a `dataset_id`

+

Add a categorical trait value substitution into a metadata file for a dataset_id

Source: R/setup.R
-

`metadata_add_substitution` is used to align the categorical trait values used +

metadata_add_substitution is used to align the categorical trait values used by a contributor to the categorical values supported by the database. These values -are defined in the `traits.yml` file.

+are defined in the traits.yml file.

@@ -107,7 +107,7 @@

Arguments

Value

-

`metadata.yml` file with a substitution added

+

metadata.yml file with a substitution added

diff --git a/docs/reference/metadata_add_substitutions_list.html b/docs/reference/metadata_add_substitutions_list.html index 77033b65..4468604e 100644 --- a/docs/reference/metadata_add_substitutions_list.html +++ b/docs/reference/metadata_add_substitutions_list.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -95,7 +95,7 @@

Arguments

Value

-

`metadata.yml` file with multiple trait value substitutions added

+

metadata.yml file with multiple trait value substitutions added

diff --git a/docs/reference/metadata_add_substitutions_table.html b/docs/reference/metadata_add_substitutions_table.html index d1b0add1..47d4d2f4 100644 --- a/docs/reference/metadata_add_substitutions_table.html +++ b/docs/reference/metadata_add_substitutions_table.html @@ -1,6 +1,6 @@ Substitutions from a dataframe — metadata_add_substitutions_table • traits.buildAdd a taxonomic change into the `metadata.yml` file for a `dataset_id` — metadata_add_taxonomic_change • traits.buildAdd a taxonomic change into the metadata.yml file for a dataset_id — metadata_add_taxonomic_change • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -68,13 +68,13 @@
-

Add a taxonomic change into the `metadata.yml` file for a `dataset_id`

+

Add a taxonomic change into the metadata.yml file for a dataset_id

Source: R/setup.R
-

Add a single taxonomic change into the `metadata.yml` file for a specific study.

+

Add a single taxonomic change into the metadata.yml file for a specific study.

@@ -112,14 +112,14 @@

Arguments

overwrite
-

Parameter indicating whether preexisting find-replace entries should be overwritten. Defaults to `true`

+

Parameter indicating whether preexisting find-replace entries should be overwritten. Defaults to true

Value

-

`metadata.yml` file with taxonomic change added

+

metadata.yml file with taxonomic change added

diff --git a/docs/reference/metadata_add_taxonomic_changes_list.html b/docs/reference/metadata_add_taxonomic_changes_list.html index 5d4ae6b3..9c1e5818 100644 --- a/docs/reference/metadata_add_taxonomic_changes_list.html +++ b/docs/reference/metadata_add_taxonomic_changes_list.html @@ -1,5 +1,5 @@ -Add a list of taxonomic updates into a metadata file for a `dataset_id` — metadata_add_taxonomic_changes_list • traits.buildAdd a list of taxonomic updates into a metadata file for a dataset_id — metadata_add_taxonomic_changes_list • traits.buildFor specified `dataset_id`, populate columns for traits into metadata — metadata_add_traits • traits.buildFor specified dataset_id, populate columns for traits into metadata — metadata_add_traits • traits.buildCheck the output of running `custom_R_code` specified in -the metadata for specified `dataset_id` — metadata_check_custom_R_code • traits.buildCheck the output of running custom_R_code specified in +the metadata for specified dataset_id — metadata_check_custom_R_code • traits.build @@ -22,7 +22,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -73,17 +73,17 @@
-

Check the output of running `custom_R_code` specified in -the metadata for specified `dataset_id`

+

Check the output of running custom_R_code specified in +the metadata for specified dataset_id

Source: R/setup.R
-

Function to check the output of running `custom_R_code` specified in -the `metadata.yml` file for specified `dataset_id`. -For the specified `dataset_id`, reads in the file `data.csv` and -applies manipulations as described in the file `metadata.yml`

+

Function to check the output of running custom_R_code specified in +the metadata.yml file for specified dataset_id. +For the specified dataset_id, reads in the file data.csv and +applies manipulations as described in the file metadata.yml

diff --git a/docs/reference/metadata_create_template.html b/docs/reference/metadata_create_template.html index 0c7facc8..92a61881 100644 --- a/docs/reference/metadata_create_template.html +++ b/docs/reference/metadata_create_template.html @@ -1,5 +1,5 @@ -Create a template of file `metadata.yml` for specified `dataset_id` — metadata_create_template • traits.buildCreate a template of file metadata.yml for specified dataset_id — metadata_create_template • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,7 +68,7 @@
-

Create a template of file `metadata.yml` for specified `dataset_id`

+

Create a template of file metadata.yml for specified dataset_id

Source: R/setup.R
diff --git a/docs/reference/metadata_exclude_observations.html b/docs/reference/metadata_exclude_observations.html index 57cbc3f3..b8e9757d 100644 --- a/docs/reference/metadata_exclude_observations.html +++ b/docs/reference/metadata_exclude_observations.html @@ -1,5 +1,5 @@ -Exclude observations in a yaml file for a `dataset_id` — metadata_exclude_observations • traits.buildExclude observations in a yaml file for a dataset_id — metadata_exclude_observations • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Exclude observations in a yaml file for a `dataset_id`

+

Exclude observations in a yaml file for a dataset_id

Source: R/setup.R
-

Exclude observations in a yaml file for a `dataset_id`

+

Exclude observations in a yaml file for a dataset_id

@@ -103,7 +103,7 @@

Arguments

Value

-

`metadata.yml` file with excluded observations

+

metadata.yml file with excluded observations

diff --git a/docs/reference/metadata_find_taxonomic_change.html b/docs/reference/metadata_find_taxonomic_change.html index 4d76b8cc..51ba51f8 100644 --- a/docs/reference/metadata_find_taxonomic_change.html +++ b/docs/reference/metadata_find_taxonomic_change.html @@ -1,5 +1,5 @@ -Find `dataset_id`'s with a given taxonomic change — metadata_find_taxonomic_change • traits.buildFind dataset_id's with a given taxonomic change — metadata_find_taxonomic_change • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Find `dataset_id`'s with a given taxonomic change

+

Find dataset_id's with a given taxonomic change

Source: R/setup.R
-

Find `dataset_id`'s with a given taxonomic change

+

Find dataset_id's with a given taxonomic change

diff --git a/docs/reference/metadata_path_dataset_id.html b/docs/reference/metadata_path_dataset_id.html index 44239db3..e258f593 100644 --- a/docs/reference/metadata_path_dataset_id.html +++ b/docs/reference/metadata_path_dataset_id.html @@ -1,5 +1,5 @@ -Path to the `metadata.yml` file for specified `dataset_id` — metadata_path_dataset_id • traits.buildPath to the metadata.yml file for specified dataset_id — metadata_path_dataset_id • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Path to the `metadata.yml` file for specified `dataset_id`

+

Path to the metadata.yml file for specified dataset_id

Source: R/setup.R
-

Path to the `metadata.yml` file for specified `dataset_id`

+

Path to the metadata.yml file for specified dataset_id

diff --git a/docs/reference/metadata_remove_taxonomic_change.html b/docs/reference/metadata_remove_taxonomic_change.html index f089709a..0e859b35 100644 --- a/docs/reference/metadata_remove_taxonomic_change.html +++ b/docs/reference/metadata_remove_taxonomic_change.html @@ -1,5 +1,5 @@ -Remove a taxonomic change from a yaml file for a `dataset_id` — metadata_remove_taxonomic_change • traits.buildRemove a taxonomic change from a yaml file for a dataset_id — metadata_remove_taxonomic_change • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Remove a taxonomic change from a yaml file for a `dataset_id`

+

Remove a taxonomic change from a yaml file for a dataset_id

Source: R/setup.R
-

Remove a taxonomic change from a yaml file for a `dataset_id`

+

Remove a taxonomic change from a yaml file for a dataset_id

@@ -95,7 +95,7 @@

Arguments

Value

-

`metadata.yml` file with a taxonomic change removed

+

metadata.yml file with a taxonomic change removed

diff --git a/docs/reference/metadata_update_taxonomic_change.html b/docs/reference/metadata_update_taxonomic_change.html index 01b96e29..5f9e2da9 100644 --- a/docs/reference/metadata_update_taxonomic_change.html +++ b/docs/reference/metadata_update_taxonomic_change.html @@ -1,5 +1,5 @@ -Update a taxonomic change into a yaml file for a `dataset_id` — metadata_update_taxonomic_change • traits.buildUpdate a taxonomic change into a yaml file for a dataset_id — metadata_update_taxonomic_change • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Update a taxonomic change into a yaml file for a `dataset_id`

+

Update a taxonomic change into a yaml file for a dataset_id

Source: R/setup.R
-

Update a taxonomic change into a yaml file for a `dataset_id`

+

Update a taxonomic change into a yaml file for a dataset_id

@@ -114,7 +114,7 @@

Arguments

Value

-

`metadata.yml` file with added substitution

+

metadata.yml file with added substitution

diff --git a/docs/reference/metadata_user_select_column.html b/docs/reference/metadata_user_select_column.html index d9fc7035..6d79bd0e 100644 --- a/docs/reference/metadata_user_select_column.html +++ b/docs/reference/metadata_user_select_column.html @@ -1,8 +1,8 @@ -Select column by user — metadata_user_select_column • traits.buildSelect column by user — metadata_user_select_column • traits.build @@ -20,7 +20,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -77,10 +77,10 @@

Select column by user

-

`metadata_user_select_column` is used to select which columns in a dataframe/tibble +

metadata_user_select_column is used to select which columns in a dataframe/tibble corresponds to the variable of interest. It is used to compile the metadata yaml file by prompting the user to choose the relevant columns. It is used in -`metadata_add_locations` and `metadata_create_template`.

+metadata_add_locations and metadata_create_template.

diff --git a/docs/reference/metadata_user_select_names.html b/docs/reference/metadata_user_select_names.html index 3c9f7459..0a3e41f7 100644 --- a/docs/reference/metadata_user_select_names.html +++ b/docs/reference/metadata_user_select_names.html @@ -1,7 +1,7 @@ -Select variable names by user — metadata_user_select_names • traits.buildSelect variable names by user — metadata_user_select_names • traits.build @@ -19,7 +19,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -76,9 +76,9 @@

Select variable names by user

-

`metadata_user_select_names` is used to prompt the user to select the variables that +

metadata_user_select_names is used to prompt the user to select the variables that are relevant for compiling the metadata yaml file. It is currently used for -`metadata_add_traits`, `metadata_add_locations` and `metadata_add_contexts`.

+metadata_add_traits, metadata_add_locations and metadata_add_contexts.

diff --git a/docs/reference/notes_random_string.html b/docs/reference/notes_random_string.html index 64627034..8e1a26e1 100644 --- a/docs/reference/notes_random_string.html +++ b/docs/reference/notes_random_string.html @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/notetaker_add_note.html b/docs/reference/notetaker_add_note.html index 366fee65..b6a910ae 100644 --- a/docs/reference/notetaker_add_note.html +++ b/docs/reference/notetaker_add_note.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/notetaker_as_note.html b/docs/reference/notetaker_as_note.html index 7ba0fc1c..96e33245 100644 --- a/docs/reference/notetaker_as_note.html +++ b/docs/reference/notetaker_as_note.html @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/notetaker_get_note.html b/docs/reference/notetaker_get_note.html index 94828a90..3d989c3a 100644 --- a/docs/reference/notetaker_get_note.html +++ b/docs/reference/notetaker_get_note.html @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/notetaker_print_all.html b/docs/reference/notetaker_print_all.html index 2508ec1b..299a2a41 100644 --- a/docs/reference/notetaker_print_all.html +++ b/docs/reference/notetaker_print_all.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/notetaker_print_note.html b/docs/reference/notetaker_print_note.html index b41e4eae..ca6b2920 100644 --- a/docs/reference/notetaker_print_note.html +++ b/docs/reference/notetaker_print_note.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/notetaker_print_notes.html b/docs/reference/notetaker_print_notes.html index 230f4f24..864779da 100644 --- a/docs/reference/notetaker_print_notes.html +++ b/docs/reference/notetaker_print_notes.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 diff --git a/docs/reference/notetaker_start.html b/docs/reference/notetaker_start.html index 228fe4cd..4f89252e 100644 --- a/docs/reference/notetaker_start.html +++ b/docs/reference/notetaker_start.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 diff --git a/docs/reference/pipe.html b/docs/reference/pipe.html index 90ab2934..5553b077 100644 --- a/docs/reference/pipe.html +++ b/docs/reference/pipe.html @@ -1,5 +1,5 @@ -Pipe operator — %>% • traits.buildPipe operator — %>% • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -74,7 +74,7 @@

Pipe operator

-

See magrittr::%>% for details.

+

See magrittr::[\%>\%][magrittr::pipe] for details.

diff --git a/docs/reference/process_add_all_columns.html b/docs/reference/process_add_all_columns.html index 6df2f485..c45c9615 100644 --- a/docs/reference/process_add_all_columns.html +++ b/docs/reference/process_add_all_columns.html @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/process_convert_units.html b/docs/reference/process_convert_units.html index b2ab920f..b148d757 100644 --- a/docs/reference/process_convert_units.html +++ b/docs/reference/process_convert_units.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -88,11 +88,11 @@

Arguments

definitions
-

Definitions read in from the `traits.yml` file in the config folder

+

Definitions read in from the traits.yml file in the config folder

unit_conversion_functions
-

`unit_conversions.csv` file stored in the config folder

+

unit_conversions.csv file stored in the config folder

diff --git a/docs/reference/process_create_observation_id.html b/docs/reference/process_create_observation_id.html index 7d4e4ea8..9f94e144 100644 --- a/docs/reference/process_create_observation_id.html +++ b/docs/reference/process_create_observation_id.html @@ -1,7 +1,7 @@ Create entity id — process_create_observation_id • traits.build @@ -19,7 +19,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -78,7 +78,7 @@

Create entity id

Creates 3-part entity id codes that combine a segment for species, population, and, when applicable, individual. -This depends upon a `parsing_id` being established when the `data.csv` file is first read in.

+This depends upon a parsing_id being established when the data.csv file is first read in.

diff --git a/docs/reference/process_custom_code.html b/docs/reference/process_custom_code.html index 7bf0e31f..0bc4b16a 100644 --- a/docs/reference/process_custom_code.html +++ b/docs/reference/process_custom_code.html @@ -1,7 +1,7 @@ -Apply custom data manipulations — process_custom_code • traits.buildApply custom data manipulations — process_custom_code • traits.build @@ -19,7 +19,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -76,9 +76,9 @@

Apply custom data manipulations

-

Applies custom data manipulations if the metadata field `custom_R_code` is not empty -Otherwise no manipulations will be done by applying the `identity` function. -The code `custom_R_code` assumes a single input.

+

Applies custom data manipulations if the metadata field custom_R_code is not empty +Otherwise no manipulations will be done by applying the identity function. +The code custom_R_code assumes a single input.

@@ -88,7 +88,7 @@

Apply custom data manipulations

Arguments

txt
-

Character text within custom_R_code of a `metadata.yml` file

+

Character text within custom_R_code of a metadata.yml file

diff --git a/docs/reference/process_flag_excluded_observations.html b/docs/reference/process_flag_excluded_observations.html index da262ca5..fa05d427 100644 --- a/docs/reference/process_flag_excluded_observations.html +++ b/docs/reference/process_flag_excluded_observations.html @@ -19,7 +19,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/process_flag_out_of_range_values.html b/docs/reference/process_flag_out_of_range_values.html index 94ccc1c5..ef1ca6f2 100644 --- a/docs/reference/process_flag_out_of_range_values.html +++ b/docs/reference/process_flag_out_of_range_values.html @@ -1,6 +1,6 @@ Flag values outside of allowable range — process_flag_out_of_range_values • traits.build @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -76,7 +76,7 @@

Flag values outside of allowable range

Flags any numeric values that are outside the allowable range defined in the -`traits.yml` file.

+traits.yml file.

@@ -90,7 +90,7 @@

Arguments

definitions
-

Definitions read in from the `traits.yml` file in the config folder

+

Definitions read in from the traits.yml file in the config folder

diff --git a/docs/reference/process_flag_unsupported_characters.html b/docs/reference/process_flag_unsupported_characters.html index 330b2664..ef006110 100644 --- a/docs/reference/process_flag_unsupported_characters.html +++ b/docs/reference/process_flag_unsupported_characters.html @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/process_flag_unsupported_traits.html b/docs/reference/process_flag_unsupported_traits.html index df5fc8ca..cfb6ce5a 100644 --- a/docs/reference/process_flag_unsupported_traits.html +++ b/docs/reference/process_flag_unsupported_traits.html @@ -1,5 +1,5 @@ -Flag any unrecognised traits — process_flag_unsupported_traits • traits.buildFlag any unrecognised traits — process_flag_unsupported_traits • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -74,7 +74,7 @@

Flag any unrecognised traits

-

Flag any unrecognised traits, as defined in the `traits.yml` file.

+

Flag any unrecognised traits, as defined in the traits.yml file.

@@ -88,7 +88,7 @@

Arguments

definitions
-

Definitions read in from the `traits.yml` file in the config folder

+

Definitions read in from the traits.yml file in the config folder

diff --git a/docs/reference/process_flag_unsupported_values.html b/docs/reference/process_flag_unsupported_values.html index 317d7ebe..e6246904 100644 --- a/docs/reference/process_flag_unsupported_values.html +++ b/docs/reference/process_flag_unsupported_values.html @@ -1,6 +1,6 @@ Flag disallowed trait values and disallowed characters — process_flag_unsupported_values • traits.buildFormat context data from list to tibble — process_format_contexts • traits.buildFormat context data from list to tibble — process_format_contexts • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -74,7 +74,7 @@

Format context data from list to tibble

-

Format context data read in from the `metadata.yml` file. Converts from list to tibble.

+

Format context data read in from the metadata.yml file. Converts from list to tibble.

diff --git a/docs/reference/process_format_contributors.html b/docs/reference/process_format_contributors.html index d8498096..627b9c96 100644 --- a/docs/reference/process_format_contributors.html +++ b/docs/reference/process_format_contributors.html @@ -1,5 +1,5 @@ -Format contributors from list into tibble — process_format_contributors • traits.buildFormat contributors from list into tibble — process_format_contributors • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -74,7 +74,7 @@

Format contributors from list into tibble

-

Format contributors, read in from the `metadata.yml` file. Converts from list to tibble.

+

Format contributors, read in from the metadata.yml file. Converts from list to tibble.

diff --git a/docs/reference/process_format_locations.html b/docs/reference/process_format_locations.html index 7eefe124..e695c49a 100644 --- a/docs/reference/process_format_locations.html +++ b/docs/reference/process_format_locations.html @@ -1,5 +1,5 @@ -Format location data from list to tibble — process_format_locations • traits.buildFormat location data from list to tibble — process_format_locations • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -74,7 +74,7 @@

Format location data from list to tibble

-

Format location data read in from the `metadata.yml` file. Converts from list to tibble.

+

Format location data read in from the metadata.yml file. Converts from list to tibble.

diff --git a/docs/reference/process_generate_id.html b/docs/reference/process_generate_id.html index dae5b35f..6afaaec0 100644 --- a/docs/reference/process_generate_id.html +++ b/docs/reference/process_generate_id.html @@ -20,7 +20,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/process_generate_method_ids.html b/docs/reference/process_generate_method_ids.html index a35b0c91..3fa85a43 100644 --- a/docs/reference/process_generate_method_ids.html +++ b/docs/reference/process_generate_method_ids.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 diff --git a/docs/reference/process_parse_data.html b/docs/reference/process_parse_data.html index 594afeb4..9cc7b5f7 100644 --- a/docs/reference/process_parse_data.html +++ b/docs/reference/process_parse_data.html @@ -1,8 +1,8 @@ -Process a single dataset — process_parse_data • traits.buildProcess a single dataset — process_parse_data • traits.build @@ -20,7 +20,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -77,10 +77,10 @@

Process a single dataset

-

Process a single dataset with `dataset_id` using the associated `data.csv` and -`metadata.yml` files. Adds a unique observation id for each row of observation, +

Process a single dataset with dataset_id using the associated data.csv and +metadata.yml files. Adds a unique observation id for each row of observation, trait names are formatted using AusTraits accepted names and trait substitutions -are added. `parse data` is used in the core workflow pipeline (i.e. in `load study`).

+are added. parse data is used in the core workflow pipeline (i.e. in load study).

diff --git a/docs/reference/process_standardise_names.html b/docs/reference/process_standardise_names.html index 015e4283..8ebaa666 100644 --- a/docs/reference/process_standardise_names.html +++ b/docs/reference/process_standardise_names.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/process_taxonomic_updates.html b/docs/reference/process_taxonomic_updates.html index d7731c18..e6feec36 100644 --- a/docs/reference/process_taxonomic_updates.html +++ b/docs/reference/process_taxonomic_updates.html @@ -1,5 +1,5 @@ -Apply taxonomic updates — process_taxonomic_updates • traits.buildApply taxonomic updates — process_taxonomic_updates • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -74,7 +74,7 @@

Apply taxonomic updates

-

Applies taxonomic updates to the study data from the `metadata.yml` file.

+

Applies taxonomic updates to the study data from the metadata.yml file.

diff --git a/docs/reference/process_unit_conversion_name.html b/docs/reference/process_unit_conversion_name.html index 44c6f704..0a15d9fb 100644 --- a/docs/reference/process_unit_conversion_name.html +++ b/docs/reference/process_unit_conversion_name.html @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/read_csv_char.html b/docs/reference/read_csv_char.html index 929f57f6..fd180104 100644 --- a/docs/reference/read_csv_char.html +++ b/docs/reference/read_csv_char.html @@ -1,5 +1,5 @@ -Read in a csv as a tibble with column types as characters — read_csv_char • traits.buildRead in a csv as a tibble with column types as characters — read_csv_char • traits.buildRead in a `metadata.yml` file for a study — read_metadata • traits.buildRead in a metadata.yml file for a study — read_metadata • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -68,13 +68,13 @@
-

Read in a `metadata.yml` file for a study

+

Read in a metadata.yml file for a study

Source: R/utils.R
-

Read in a `metadata.yml` file for a study

+

Read in a metadata.yml file for a study

diff --git a/docs/reference/read_metadata_dataset.html b/docs/reference/read_metadata_dataset.html index 6eb11b9c..153a2ec8 100644 --- a/docs/reference/read_metadata_dataset.html +++ b/docs/reference/read_metadata_dataset.html @@ -1,5 +1,5 @@ -Read the `metadata.yml` file for specified `dataset_id` — read_metadata_dataset • traits.buildRead the metadata.yml file for specified dataset_id — read_metadata_dataset • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Read the `metadata.yml` file for specified `dataset_id`

+

Read the metadata.yml file for specified dataset_id

Source: R/utils.R
-

Read the `metadata.yml` file for specified `dataset_id`

+

Read the metadata.yml file for specified dataset_id

@@ -95,7 +95,9 @@

Arguments

Value

-

A list with contents of metadata for specified `dataset_id`

+

A list with contents of metadata for specified dataset_id

+ +
diff --git a/docs/reference/read_yaml.html b/docs/reference/read_yaml.html index 6289fd24..b75eb303 100644 --- a/docs/reference/read_yaml.html +++ b/docs/reference/read_yaml.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/reexports.html b/docs/reference/reexports.html new file mode 100644 index 00000000..097afc71 --- /dev/null +++ b/docs/reference/reexports.html @@ -0,0 +1,117 @@ + +Objects exported from other packages — reexports • traits.build + + +
+
+ + + +
+
+
+

Objects exported from other packages

+ Source: R/utils.R + +
+ +
+

These objects are imported from other packages. Follow the links +below to see their documentation.

+
austraits
+

bind_databases, convert_df_to_list, convert_list_to_df1, convert_list_to_df2, flatten_database

+ + +
+ + + +
+ +
+ + +
+

Developed by Daniel Falster, Elizabeth Wenk, Sophie Yang, Fonti Kar, ARDC, ARC.

+
+ +
+

Site built with pkgdown 2.0.7.

+
+ +
+ + + + + + + + diff --git a/docs/reference/traits.build-package.html b/docs/reference/traits.build-package.html index 3599daf5..82539ea0 100644 --- a/docs/reference/traits.build-package.html +++ b/docs/reference/traits.build-package.html @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/util_append_to_list.html b/docs/reference/util_append_to_list.html index 66380656..37b36ad5 100644 --- a/docs/reference/util_append_to_list.html +++ b/docs/reference/util_append_to_list.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/util_bib_to_list.html b/docs/reference/util_bib_to_list.html index 8f0a9a14..ef1fca99 100644 --- a/docs/reference/util_bib_to_list.html +++ b/docs/reference/util_bib_to_list.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 diff --git a/docs/reference/util_check_all_values_in.html b/docs/reference/util_check_all_values_in.html index f533cf38..92c52b1b 100644 --- a/docs/reference/util_check_all_values_in.html +++ b/docs/reference/util_check_all_values_in.html @@ -1,6 +1,6 @@ -Check values in one vector against values in another vector — util_check_all_values_in • traits.buildCheck values in one vector against values in another vector — util_check_all_values_in • traits.build @@ -18,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -75,8 +75,8 @@

Check values in one vector against values in another vector

-

`util_check_all_values_in` checks if values in vector x are in y. Values in x may -contain multiple values separated by `sep` so these are split first using `str_split`.

+

util_check_all_values_in checks if values in vector x are in y. Values in x may +contain multiple values separated by sep so these are split first using str_split.

diff --git a/docs/reference/util_check_disallowed_chars.html b/docs/reference/util_check_disallowed_chars.html index d3f35da7..432cd685 100644 --- a/docs/reference/util_check_disallowed_chars.html +++ b/docs/reference/util_check_disallowed_chars.html @@ -1,5 +1,5 @@ -Check values in a vector do not contain disallowed characters — util_check_disallowed_chars • traits.buildCheck values in a vector do not contain disallowed characters — util_check_disallowed_chars • traits.buildConvert dataframe to list — util_df_to_list • traits.buildConvert dataframe to list — util_df_to_list • traits.build @@ -17,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -75,6 +76,7 @@

Convert dataframe to list

Convert a dataframe to a named list, useful when converting to yaml.

+

[Deprecated]

@@ -97,6 +99,8 @@

Value

Examples

util_df_to_list(dplyr::starwars)
+#> Warning: `util_df_to_list()` was deprecated in traits.build 1.0.0.
+#> ℹ Please use `austraits::convert_df_to_list()` instead.
 #> [[1]]
 #> [[1]]$name
 #> [1] "Luke Skywalker"
diff --git a/docs/reference/util_extract_list_element.html b/docs/reference/util_extract_list_element.html
index 55e143b6..693085a2 100644
--- a/docs/reference/util_extract_list_element.html
+++ b/docs/reference/util_extract_list_element.html
@@ -17,7 +17,7 @@
       
       
         traits.build
-        1.1.0
+        2.0.0
diff --git a/docs/reference/util_get_SHA.html b/docs/reference/util_get_SHA.html index 25b49071..6238de48 100644 --- a/docs/reference/util_get_SHA.html +++ b/docs/reference/util_get_SHA.html @@ -19,7 +19,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/util_get_version.html b/docs/reference/util_get_version.html index 4ddb4a8f..7825b5e3 100644 --- a/docs/reference/util_get_version.html +++ b/docs/reference/util_get_version.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/util_kable_styling_html.html b/docs/reference/util_kable_styling_html.html index 80c40eca..f5e1be14 100644 --- a/docs/reference/util_kable_styling_html.html +++ b/docs/reference/util_kable_styling_html.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -84,7 +84,7 @@

Format table with kable and default styling for html

Arguments

...
-

Arguments passed to `kableExtra::kable()`

+

Arguments passed to kableExtra::kable()

diff --git a/docs/reference/util_list_to_bib.html b/docs/reference/util_list_to_bib.html index 3fd9b332..37fa0c75 100644 --- a/docs/reference/util_list_to_bib.html +++ b/docs/reference/util_list_to_bib.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 diff --git a/docs/reference/util_list_to_df1.html b/docs/reference/util_list_to_df1.html index 3b762593..b556c9bd 100644 --- a/docs/reference/util_list_to_df1.html +++ b/docs/reference/util_list_to_df1.html @@ -1,5 +1,5 @@ -Convert a list with single entries to dataframe — util_list_to_df1 • traits.buildConvert a list with single entries to dataframe — util_list_to_df1 • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0 @@ -74,7 +74,7 @@

Convert a list with single entries to dataframe

-

Convert a list with single entries to dataframe

+

[Deprecated]

diff --git a/docs/reference/util_list_to_df2.html b/docs/reference/util_list_to_df2.html index e481d9b2..442826bf 100644 --- a/docs/reference/util_list_to_df2.html +++ b/docs/reference/util_list_to_df2.html @@ -1,5 +1,6 @@ -Convert a list of lists to dataframe — util_list_to_df2 • traits.buildConvert a list of lists to dataframe — util_list_to_df2 • traits.build @@ -17,7 +18,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -75,6 +76,7 @@

Convert a list of lists to dataframe

Convert a list of lists to dataframe; requires that every list have same named elements.

+

[Deprecated]

@@ -99,6 +101,8 @@

Arguments

Examples

util_list_to_df2(util_df_to_list(dplyr::starwars))
+#> Warning: `util_list_to_df2()` was deprecated in traits.build 1.0.0.
+#> ℹ Please use `austraits::convert_list_to_df2()` instead.
 #> # A tibble: 87 × 14
 #>    name     height mass  hair_color skin_color eye_color birth_year sex   gender
 #>    <chr>    <chr>  <chr> <chr>      <chr>      <chr>     <chr>      <chr> <chr> 
diff --git a/docs/reference/util_replace_null.html b/docs/reference/util_replace_null.html
index 268e0b88..cae996af 100644
--- a/docs/reference/util_replace_null.html
+++ b/docs/reference/util_replace_null.html
@@ -1,5 +1,5 @@
 
-Convert NULL values to a different value — util_replace_null • traits.buildConvert NULL values to a different value — util_replace_null • traits.buildSplit and sort cells with multiple values — util_separate_and_sort • traits.buildSplit and sort cells with multiple values — util_separate_and_sort • traits.build
@@ -18,7 +18,7 @@
       
       
         traits.build
-        1.1.0
+        2.0.0
@@ -75,8 +75,8 @@

Split and sort cells with multiple values

-

`util_separate_and_sort`: For a vector x in which individual cell may have - multiple values (separated by 'sep'), sort records within each cell alphabetically.

+

util_separate_and_sort: For a vector x in which individual cell may have +multiple values (separated by 'sep'), sort records within each cell alphabetically.

diff --git a/docs/reference/util_standardise_doi.html b/docs/reference/util_standardise_doi.html index 3b51db35..8db22cc0 100644 --- a/docs/reference/util_standardise_doi.html +++ b/docs/reference/util_standardise_doi.html @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
diff --git a/docs/reference/write_metadata.html b/docs/reference/write_metadata.html index ac488919..24b19826 100644 --- a/docs/reference/write_metadata.html +++ b/docs/reference/write_metadata.html @@ -1,5 +1,5 @@ -Write `metadata.yml` for a study — write_metadata • traits.buildWrite metadata.yml for a study — write_metadata • traits.build @@ -17,7 +17,7 @@ traits.build - 1.1.0 + 2.0.0
@@ -68,13 +68,13 @@
-

Write `metadata.yml` for a study

+

Write metadata.yml for a study

Source: R/utils.R
-

Write `metadata.yml` file with custom R code formatted to allow line breaks.

+

Write metadata.yml file with custom R code formatted to allow line breaks.

@@ -84,7 +84,7 @@

Write `metadata.yml` for a study

Arguments

data
-

`austraits` metadata object (a list)

+

austraits metadata object (a list)

path
diff --git a/docs/reference/write_metadata_dataset.html b/docs/reference/write_metadata_dataset.html index 695f253c..f88c915c 100644 --- a/docs/reference/write_metadata_dataset.html +++ b/docs/reference/write_metadata_dataset.html @@ -1,7 +1,7 @@ -Write the YAML representation of `metadata.yml` for specified `dataset_id` to -file data/dataset_id/metadata.yml — write_metadata_dataset • traits.buildWrite the YAML representation of metadata.yml for specified dataset_id to +file data/dataset_id/metadata.yml — write_metadata_dataset • traits.build + +
+Source: +
+
+

10.5281/zenodo.8040789

+

JSON-LD

+
+
+Contributing: +
+
+contributions welcome +
+
+Cite as: +
+
+Wenk, Elizabeth H., Payal Bal, David Coleman, Rachael V. Gallagher, Sophie Yang, and Daniel S. Falster. “Traits.Build: A Data Model, Workflow and R Package for Building Harmonised Ecological Trait Databases.” bioRxiv, February 12, 2024. doi.org/10.1101/2024.02.11.579848 +
+
+ + +
+

Abstract

+

This document presents the traits.build data model (data standard), formally published within the w3id.org/traits.build namespace. The traits.build ontology documents the output structure of a database built using the {traits.build} R package. It terms are both the output variables in each of the databases’s relational tables and additional conceptual terms inherent to the database structure. The ontology describes these terms and the semantic relationships between them. The traits.build data model adheres to the OBOE ontology and draws upon previously published terms whenever possible, especially DarwinCore and the Ecological Trait-data Standard.

+
+
+

Table of Contents

+
    +
  1. Introduction
    2. +
  2. traits.build data model: The terms within the formal traits.build ontology
    3. +
  3. Acknowledgements
    4. +
+
+
+

1. Introduction

+

A database must be accompanied by a published data model to be: 1) efficiently and accurately interpreted and used by researchers; and 2) easily integrated with other databases. A published data model should be machine-readable for easy integration into future data products, yet also tractable to human readers. A data model (a.k.a. data standard, ontology) must document the meanings behind each database output variable and should also record the semantic relationships between columns. For instance, within the traits.build ontology, indicating that observation_id is an identifier for a unique observation.

+

To the extent possible, a data model should draw upon previously published vocabularies and ontologies, explicitly indicating when terms within the data model are identical to those used by other databases (or other bioinformatics outputs). For instance, the traits.build data standard maps terms related to taxonomy and species occurrences to DarwinCore and terms related to trait measurements to the Ecological Trait-data Standard. The semantic relationships between terms adhere to the OBOE ontology, a generic relational ontology developed explicitly for documenting ecological trait observations and the context properties that are essential to document for ecological data. It further draws upon properties defined by the Semanticscience Integrated Ontology (https://bioportal.bioontology.org/ontologies/SIO) to describe relationships between terms.

+

Within the traits.build ontology, there are 5 main categories of terms, differentiated based on whether they are database tables, rows, or columns:

+
    +
  1. Database tables: The relational tables (traits, contexts, locations, methods, taxa, contributors, taxonomic_updates). These terms are all mapped as having the property computational entity = database table
    +
    2. +
  2. Database table columns: The columns within these relational tables, all mapped as being organised into one (or more) of the tables using dwc-attributes:organisedInClass. These terms are all mapped as having the property computational entity = database column
    +
    3. +
  3. Database table entries: Single, implicitly structured data items in a table. These terms are all types of oboe-core:Entity, objects that are the foci for an oboe-core:observation. These terms are all mapped as having the property computational entity = database entry
    +
    4. +
  4. Clusters of rows within a database table: Collections of rows within a table that represent either observations or observation collections. These terms are all mapped as having the property computational entity = database table.
    +
    5. +
  5. Individual rows within a database table: Individual rows within a table that are measurements. These terms are all mapped as having the property computational entity = database row.
    6. +
+
+
+

2. Traits.build data model

+

The traits.build resource

+
+ + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Property + +Value +
+URI + +w3id.org/traits.build +
+description + +The traits.build ontology documents the output structure of a database built using the {traits.build} R package. +
+license + +https://creativecommons.org/licenses/by/4.0/ +
+publisher + +https://austraits.org/ +
+type + +concept scheme +
+label + +traits.build +
+has top concept + +https://w3id.org/traits.build-database +
+creator + +Daniel Falster +
+creator + +Elizabeth Wenk +
+creator + +Sophie Yang +
+created + +01 February 2024 +
+
+
+

Database

+

A traits.build database

+
+ + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Property + +Value +
+URI + +w3id.org/traits.build#traits.build-database +
+alternative label + +traits.build_database +
+computational entity + +database +
+label + +traits.build database +
+description + +A database of 13 relational tables build using the {traits.build} R-package for harmonizing trait data. +
+created + +01 February 2024 +
+is in scheme + +traits.build +
+is top concept in scheme + +traits.build +
+
+
+
+

Database Tables

+

The traits.build output tables

+

+
+

traits table

+
+ + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Property + +Value +
+URI + +w3id.org/traits.build#traits.build-traits +
+preferred label + +traits table +
+alternative label + +traits +
+description + +A table containing measurements of traits. +
+comment + +Includes information that must be recorded at the Measurement or Observation level. +
+computational entity + +database table +
+organizedInClass + +
+has exact match + +
  • Traitdata +
    • +has related match + +
  • MeasurementOrFact
    • +
  • Occurrence +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    locations table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-locations +
    +preferred label + +locations table +
    +alternative label + +locations +
    +description + +A table containing observations of location/site characteristics associated with information in traits. Cross referencing between the two dataframes is possible using combinations of the variables dataset_id, location_name. +
    +comment + +Includes information about Location properties. +
    +computational entity + +database table +
    +organizedInClass + +
    +has related match + +
  • Occurrence +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    contexts table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-contexts +
    +preferred label + +contexts table +
    +alternative label + +contexts +
    +description + +A table containing observations of contextual characteristics associated with information in traits. Cross referencing between the two dataframes is possible using combinations of the variables dataset_id, link_id, and link_vals. +
    +computational entity + +database table +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    methods table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-methods +
    +preferred label + +methods table +
    +alternative label + +methods +
    +description + +A table containing details on methods with which data were collected, including time frame and source. Cross referencing with the traits table is possible using combinations of the variables dataset_id, trait_name. +
    +computational entity + +database table +
    +organizedInClass + +
    +has related match + +
  • MeasurementOrFact +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    excluded data table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-excluded_data +
    +preferred label + +excluded data table +
    +alternative label + +excluded_data +
    +description + +A table of data that did not pass quality tests and so were excluded from the master dataset. The structure is identical to that presented in the traits table, only with an extra column called error indicating why the record was excluded. Common reasons are missing_unit_conversions, missing_value, and unsupported_trait_value. +
    +computational entity + +database table +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    taxonomic updates table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-taxonomic_updates +
    +preferred label + +taxonomic updates table +
    +alternative label + +taxonomic_updates +
    +description + +A table of all taxonomic changes implemented in the construction of AusTraits. Changes are determined by comparing the originally submitted taxon name against the taxonomic names listed in the taxonomic reference files, best placed in a subfolder in the config folder . Cross referencing with the traits table is possible using combinations of the variables dataset_id and taxon_name. +
    +computational entity + +database table +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    taxa table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-taxa +
    +preferred label + +taxa table +
    +alternative label + +taxa +
    +description + +A table containing details on taxa associated with information in traits. Whenever possible, this information is sourced from curated taxon lists that include identifiers for each taxon. The information compiled in this table is released under a CC-BY3 license. Cross referencing between the two dataframes is possible using combinations of the variable taxon_name. +
    +computational entity + +database table +
    +organizedInClass + +
    +has exact match + +
  • Taxon +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    contributors table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-contributors +
    +preferred label + +contributors table +
    +alternative label + +contributors +
    +description + +A table of people contributing to each study. +
    +computational entity + +database table +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    sources table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-sources +
    +preferred label + +sources table +
    +alternative label + +sources +
    +description + +A list containing citation details for all database sources. +
    +computational entity + +database table +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    definitions table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-definitions +
    +preferred label + +definitions table +
    +alternative label + +definitions +
    +description + +A list containing trait concept descriptions used to build the database. +
    +computational entity + +database table +
    +organizedInClass + +
    +has exact match + +
  • Traitdata +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    schema

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-schema +
    +preferred label + +schema +
    +alternative label + +schema +
    +description + +A copy of the schema for all tables and terms. Information included here was used to process data and generate any documentation for the study. +
    +computational entity + +metadata +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    metadata table

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-metadata +
    +preferred label + +metadata table +
    +alternative label + +metadata +
    +description + +A list containing database metadata. +
    +computational entity + +metadata +
    +organizedInClass + +
    +has close match + +
  • Metadata +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    build info

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#traits.build-build_info +
    +preferred label + +build info +
    +alternative label + +build_info +
    +description + +A description of the computing environment used to create this version of the dataset, including version number, git commit and R session_info. +
    +computational entity + +metadata +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +
    +
    +
    +

    Database Table Columns

    +

    Columns within the traits.build output tables

    +
    +

    traits table

    +

    +
    +
    +

    dataset id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#dataset_id +
    +preferred label + +dataset id +
    +alternative label + +dataset_id +
    +description + +Primary identifier for each study contributed to AusTraits, most often these are scientific papers, books, or online resources. By default this should be the name of the first author and year of publication, e.g. Falster_2005. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • observations from dataset +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    taxon name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxon_name +
    +preferred label + +taxon name +
    +alternative label + +taxon_name +
    +description + +Scientific name of the taxon on which traits were sampled, without authorship. When possible, this is the currently accepted (botanical) or valid (zoological) scientific name, but might also be a higher taxonomic level. +
    +computational entity + +database column +
    +organizedInClass + +
    +has close match + +
  • acceptedNameUsage +
    • +has broader + +
  • label
    • +
  • preferred label +
    • +has unique identifier + +
  • taxon id +
    • +is unique identifier for + +
  • observations of taxon +
    • +has basis + +
  • aligned name
    • +
  • original taxon name +
    • +has property + +
  • taxonomic dataset
    • +
  • taxon rank
    • +
  • taxonomic status +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    observation id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observation_id +
    +preferred label + +observation id +
    +alternative label + +observation_id +
    +description + +A unique integral identifier for the observation, where an observation is all measurements made on an individual at a single point in time. It is important for joining traits coming from the same observation_id. Within each dataset, observation_id’s are unique combinations of taxon_name, population_id, individual_id, and temporal_context_id. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • observation +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    trait name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#trait_name +
    +preferred label + +trait name +
    +alternative label + +trait_name +
    +description + +Name of the trait sampled. Allowable values specified in the table definitions. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • alternative label
    • +
  • label +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    value

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#trait_value +
    +preferred label + +value +
    +alternative label + +value +
    +description + +The measured value of a trait. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • traitValue +
    • +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    unit

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#unit +
    +preferred label + +unit +
    +alternative label + +unit +
    +description + +Units of the sampled trait value after aligning with AusTraits standards. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Unit
    • +
  • traitUnit +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    entity type

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#entity_type +
    +preferred label + +entity type +
    +alternative label + +entity_type +
    +description + +A categorical variable specifying the entity corresponding to the trait values recorded. +
    +computational entity + +database column +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    value type

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#value_type +
    +preferred label + +value type +
    +alternative label + +value_type +
    +description + +A categorical variable describing the statistical nature of the trait value recorded. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Base Characteristic Qualifier +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    basis of value

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#basis_of_value +
    +preferred label + +basis of value +
    +alternative label + +basis_of_value +
    +description + +A categorical variable describing how the trait value was obtained. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Measurement Type +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    replicates

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#replicates +
    +preferred label + +replicates +
    +alternative label + +replicates +
    +description + +Number of replicate measurements that comprise a recorded trait measurement. A numeric value (or range) is ideal and appropriate if the value type is a mean, median, min or  max. For these value types, if replication is unknown the entry should be unknown. If the value type is raw_value the replicate value should be 1. If the trait is categorical or the value indicates a measurement for an entire species (or other taxon) replicate value should be .na. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • individualCount +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    basis of record

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#basis_of_record +
    +preferred label + +basis of record +
    +alternative label + +basis_of_record +
    +description + +A categorical variable specifying from which kind of specimen traits were recorded. +
    +computational entity + +database column +
    +organizedInClass + +
    +has close match + +
  • basisOfRecord +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    life stage

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#life_stage +
    +preferred label + +life stage +
    +alternative label + +life_stage +
    +description + +A field to indicate the life stage or age class of the entity measured. Standard values are adult, sapling, seedling and juvenile. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • lifeStage +
    • +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +characteristic for + +
  • observation of entity context +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    population id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#population_id +
    +preferred label + +population id +
    +alternative label + +population_id +
    +description + +A unique integer identifier for a population, where a population is defined as individuals growing in the same location (location_id /location_name) and plot (plot_context_id, a context category) and being subjected to the same treatment (treatment_context_id, a context category). +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • observations of population +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    individual id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#individual_id +
    +preferred label + +individual id +
    +alternative label + +individual_id +
    +description + +A unique integer identifier for an individual, with individuals numbered sequentially within each dataset by taxon by population grouping. Most often each row of data represents an individual, but in some datasets trait data collected on a single individual is presented across multiple rows of data, such as if the same trait is measured using different methods or the same individual is measured repeatedly across time. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • observations of individual +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    repeat measurements id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#repeat_measurements_id +
    +preferred label + +repeat measurements id +
    +alternative label + +repeat_measurements_id +
    +description + +A unique integer identifier for repeat measurements of a trait that comprise a single observation, such as a response curve. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • observations of individual
    • +
  • collection date +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    temporal context id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#temporal_context_id +
    +preferred label + +temporal context id +
    +alternative label + +temporal_context_id +
    +description + +A unique integer identifier assigned where repeat observations are made on the same individual (or population, or taxon) across time. The identifier links to specific information in the context table. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • measurement of temporal context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    source id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#source_id +
    +preferred label + +source id +
    +alternative label + +source_id +
    +description + +For datasets that are compilations, an identifier for the original data source. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • observations from source +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    location id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#location_id +
    +preferred label + +location id +
    +alternative label + +location_id +
    +description + +A unique integer identifier for a location, with locations numbered sequentially within a dataset. The identifier links to specific information in the location table. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • observations at location +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    entity context id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#entity_context_id +
    +preferred label + +entity context id +
    +alternative label + +entity_context_id +
    +description + +A unique integer identifier indicating specific contextual properties of an individual, possibly including the individual’s sex or caste (for social insects). +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • measurement of entity context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    plot context id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#plot_context_id +
    +preferred label + +plot context id +
    +alternative label + +plot_context_id +
    +description + +A unique integer identifier for a plot, where a plot is a distinct collection of organisms within a single geographic location, such as plants growing on different aspects or blocks in an experiment. The identifier links to specific information in the context table. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • measurement of plot context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    treatment context id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#treatment_context_id +
    +preferred label + +treatment context id +
    +alternative label + +treatment_context_id +
    +description + +A unique integer identifier for a treatment, where a treatment is any experimental manipulation to an organism’s growing/living conditions. The identifier links to specific information in the context table. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • measurement of treatment context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    collection date

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#collection_date +
    +preferred label + +collection date +
    +alternative label + +collection_date +
    +description + +Date sample was taken, in the format yyyy-mm-dd, yyyy-mm or yyyy, depending on the resoluton specified. Alternatively an overall range for the study can be indicating, with the starting and ending sample date sepatated by a /, as in 2010-10/2011-03 +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • eventDate +
    • +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +characteristic for + +
  • observation +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +date +
    +
    +

    +
    +
    +

    measurement remarks

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#measurement_remarks +
    +preferred label + +measurement remarks +
    +alternative label + +measurement_remarks +
    +description + +Brief comments or notes accompanying the trait measurement. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • comment +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    method id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#method_id +
    +preferred label + +method id +
    +alternative label + +method_id +
    +description + +A unique integer identifier to distinguish between multiple sets of methods used to measure a single trait within the same dataset. The identifier links to specific information in the methods table. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • methods +
    • +is specialisation of + +
  • methods +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    method context id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#method_context_id +
    +preferred label + +method context id +
    +alternative label + +method_context_id +
    +description + +A unique integer identifier indicating a trait is measured multiple times on the same entity, with different methods used for each entry. This field is only used if a single trait is measured using multiple methods within the same dataset. The identifier links to specific information in the context table. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +integer +
    +
    +

    +
    +
    +

    original taxon name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#original_name +
    +preferred label + +original taxon name +
    +alternative label + +original_name +
    +description + +Name given to taxon in the original data supplied by the authors. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • label
    • +
  • preferred label +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +
    +
    +

    locations table

    +

    +
    +
    +

    location name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#location_name +
    +preferred label + +location name +
    +alternative label + +location_name +
    +description + +The location name used by the data contributor or a generic location name designated by AusTraits when one is not provided. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • label
    • +
  • preferred label +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    location property

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#location_property +
    +preferred label + +location property +
    +alternative label + +location_property +
    +description + +The location characteristic being recorded. The name should include units of measurement, e.g. MAT (C). Ideally we have at least the following variables for each location, longitude (deg), latitude (deg), description. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Characteristic +
    • +has value + +
  • location property value +
    • +characteristic for + +
  • location +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    location property value

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#locations_value +
    +preferred label + +location property value +
    +alternative label + +value +
    +description + +The measured value of a location property. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    latitude (deg)

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#latitude +
    +preferred label + +latitude (deg) +
    +alternative label + +latitude +
    +description + +The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • decimalLatitude +
    • +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +characteristic for + +
  • location +
    • +is specialisation of + +
  • location property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +decimal +
    +
    +

    +
    +
    +

    longitude (deg)

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#longitude +
    +preferred label + +longitude (deg) +
    +alternative label + +longitude +
    +description + +The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • decimalLongitude +
    • +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +characteristic for + +
  • location +
    • +is specialisation of + +
  • location property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +decimal +
    +
    +

    +
    +
    +

    elevation (m)

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#elevation +
    +preferred label + +elevation (m) +
    +alternative label + +elevation +
    +description + +The elevation above mean sea level in meters. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • verbatimElevation +
    • +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +characteristic for + +
  • location +
    • +is specialisation of + +
  • location property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +decimal +
    +
    +
    +
    +

    contexts table

    +

    +
    +
    +

    context property

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#context_property +
    +preferred label + +context property +
    +alternative label + +context_property +
    +description + +The contextual characteristic being recorded. If applicable, name should include units of measurement, e.g. CO2 concentration (ppm). +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • context property value +
    • +has broader + +
  • Characteristic +
    • +characteristic for + +
  • context +
    • +has annotation + +
  • context property category +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    context property category

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#contexts_category +
    +preferred label + +context property category +
    +alternative label + +category +
    +description + +The category of context property, with options being plot, treatment, individual_context, temporal and method. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • scope note +
    • +is annotation of + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    context property value

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#contexts_value +
    +preferred label + +context property value +
    +alternative label + +value +
    +description + +The measured value of a context property. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Measured Value
    • +
  • measurementValue +
    • +measurement for + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    context property value description

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#contexts_description +
    +preferred label + +context property value description +
    +alternative label + +description +
    +description + +Description of a specific context property value. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • description +
    • +refers to + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    + + +
    +

    treatment context property

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#treatment_context_property +
    +preferred label + +treatment context property +
    +alternative label + +treatment_context_property +
    +description + +A context characteristic indicating stratified treatments that might affect the trait values measured on an individual or population-level entity. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • context property value +
    • +has broader + +
  • Characteristic +
    • +has unique identifier + +
  • treatment context id +
    • +is specialisation of + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    plot context property

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#plot_context_property +
    +preferred label + +plot context property +
    +alternative label + +plot_context_property +
    +description + +A context characteristic indicating stratified variation within a location that might affect the trait values measured on an individual or population-level entity. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • context property value +
    • +has broader + +
  • Characteristic +
    • +has unique identifier + +
  • plot context id +
    • +is specialisation of + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    entity context property

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#entity_context_property +
    +preferred label + +entity context property +
    +alternative label + +entity_context_property +
    +description + +A context characteristic indicating stratified variation across individuals or populations might affect the trait values measured. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • context property value +
    • +has broader + +
  • Characteristic +
    • +has unique identifier + +
  • entity context id +
    • +is specialisation of + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    temporal context property

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#temporal_context_property +
    +preferred label + +temporal context property +
    +alternative label + +temporal_context_property +
    +description + +A context characteristic indicating stratified variation across time might affect the trait values measured. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • context property value +
    • +has broader + +
  • Characteristic +
    • +has unique identifier + +
  • temporal context id +
    • +is specialisation of + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    method context property

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#method_context_property +
    +preferred label + +method context property +
    +alternative label + +method_context_property +
    +description + +A context characteristic indicating stratified variation in the protocol used to measure traits might affect the trait values measured. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • context property value +
    • +has broader + +
  • Characteristic +
    • +has unique identifier + +
  • method context id +
    • +is specialisation of + +
  • context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +
    +
    +

    methods table

    +

    +
    +
    +

    methods

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#methods_methods +
    +preferred label + +methods +
    +alternative label + +methods +
    +description + +A textual description of the methods used to collect the trait data. Whenever available, methods are taken near-verbatim from the referenced source. Methods can include descriptions such as ‘measured on botanical collections’, ‘data from the literature’, or a detailed description of the field or lab methods used to collect the data. +
    +computational entity + +database column +
    +organizedInClass + +
    +has close match + +
  • Protocol +
    • +has broader + +
  • Protocol +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    dataset description

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#methods_description +
    +preferred label + +dataset description +
    +alternative label + +description +
    +description + +A 1-2 sentence description of the purpose of the study. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • datasetDescription +
    • +has broader + +
  • description +
    • +refers to + +
  • methods +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    dataset sampling strategy

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#sampling_strategy +
    +preferred label + +dataset sampling strategy +
    +alternative label + +sampling_strategy +
    +description + +When available, this information is lifted verbatim from a published manuscript. For preserved specimens, this field ideally indicates which records were ‘sampled’ to measure a specific trait. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • samplingProtocol +
    • +refers to + +
  • observations from dataset +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    source primary key

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#source_primary_key +
    +preferred label + +source primary key +
    +alternative label + +source_primary_key +
    +description + +Citation key for the primary source in sources. The key is typically formatted as Surname_year. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • dataset id +
    • +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • source primary citation +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    source primary citation

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#source_primary_citation +
    +preferred label + +source primary citation +
    +alternative label + +source_primary_citation +
    +description + +Citation for the primary source. This detail is generated from the primary source in the metadata. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • bibliographic citation +
    • +has unique identifier + +
  • source primary key +
    • +cites + +
  • dataset +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    source secondary key

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#source_secondary_key +
    +preferred label + +source secondary key +
    +alternative label + +source_secondary_key +
    +description + +Citation key for the secondary source in sources. The key is typically formatted as Surname_year. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • source secondary citation +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    source secondary citation

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#source_secondary_citation +
    +preferred label + +source secondary citation +
    +alternative label + +source_secondary_citation +
    +description + +Citations for the secondary source. This detail is generated from the secondary source in the metadata. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • bibliographic citation +
    • +has unique identifier + +
  • source secondary key +
    • +cites + +
  • dataset +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    source original dataset key

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#source_original_dataset_key +
    +preferred label + +source original dataset key +
    +alternative label + +source_original_dataset_key +
    +description + +Citation key for the original dataset_id in sources, for compilations. The key is typically formatted as Surname_year. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • source id +
    • +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • source original dataset citation +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    source original dataset citation

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#source_original_dataset_citation +
    +preferred label + +source original dataset citation +
    +alternative label + +source_original_dataset_citation +
    +description + +Citations for the original dataset_id in sources, for compilationse. This detail is generated from the original source in the metadata. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • bibliographic citation +
    • +has unique identifier + +
  • source original dataset key +
    • +cites + +
  • observations from source +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    data collectors

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#data_collectors +
    +preferred label + +data collectors +
    +alternative label + +data_collectors +
    +description + +Person contributing to a dataset as a data collector. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Data Collector +
    • +has broader + +
  • contributor +
    • +has unique identifier + +
  • ORCID identifier
    • +
  • given name
    • +
  • last name +
    • +is specialisation of + +
  • contributor +
    • +has annotation + +
  • affiliation
    • +
  • additional role +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    assistants

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#assistants +
    +preferred label + +assistants +
    +alternative label + +assistants +
    +description + +People who played a more minor role in data collection for the study. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Related Person +
    • +has broader + +
  • contributor +
    • +is specialisation of + +
  • contributor +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    dataset curators

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#dataset_curators +
    +preferred label + +dataset curators +
    +alternative label + +dataset_curators +
    +description + +Database team member(s) who contacted the data collectors and added the study to the database repository. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Data Curator +
    • +has broader + +
  • contributor +
    • +is specialisation of + +
  • contributor +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    contributor

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#contributor +
    +preferred label + +contributor +
    +alternative label + +contributor +
    +description + +A person contributing to a dataset. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • contributor +
    • +refers to + +
  • observations from dataset +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +
    +
    +

    taxonomic updates table

    +

    +
    +
    +

    aligned name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#aligned_name +
    +preferred label + +aligned name +
    +alternative label + +aligned_name +
    +description + +The taxon name without authorship after implementing automated syntax standardisation and spelling changes as well as manually encoded syntax alignments for this taxon in the metadata file for the corresponding dataset_id. This name has not yet been matched to the currently accepted (botanical) or valid (zoological) taxon name in cases where there are taxonomic synonyms, isonyms, orthographic variants, etc. +
    +computational entity + +database column +
    +organizedInClass + +
    +has broader + +
  • label
    • +
  • preferred label +
    • +has basis + +
  • original taxon name +
    • +is base for + +
  • taxon name +
    • +has property + +
  • taxonomic resolution +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    taxonomic resolution

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxonomic_resolution +
    +preferred label + +taxonomic resolution +
    +alternative label + +taxonomic_resolution +
    +description + +The rank of the most specific taxon name (or scientific name) to which a submitted orignal name resolves. +
    +computational entity + +database column +
    +organizedInClass + +
    +has related match + +
  • taxonRank +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +
    +
    +

    taxa table

    +

    +
    +
    +

    taxonomic dataset

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxonomic_dataset +
    +preferred label + +taxonomic dataset +
    +alternative label + +taxonomic_dataset +
    +description + +Name of the taxonomy (tree) that contains this concept. ie. APC, AusMoss etc. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • nomenclaturalCode +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    taxon rank

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxon_rank +
    +preferred label + +taxon rank +
    +alternative label + +taxon_rank +
    +description + +The taxonomic rank of the most specific name in the scientific name. +
    +comment + +This is to clarify cases where information is not given on a species level. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • taxonRank +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    trinomial

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#trinomial +
    +preferred label + +trinomial +
    +alternative label + +trinomial +
    +description + +The infraspecific taxon name match for an original name. This column is assigned na for taxon name that are at a broader taxonomic_resolution. +
    +computational entity + +database column +
    +organizedInClass + +
    +has related match + +
  • infraspecificEpithet +
    • +has broader + +
  • label
    • +
  • preferred label +
    • +is identifier for + +
  • taxon +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    binomial

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#binomial +
    +preferred label + +binomial +
    +alternative label + +binomial +
    +description + +The species-level taxon name match for an original name. This column is assigned na for taxon name that are at a broader taxonomic_resolution. +
    +computational entity + +database column +
    +organizedInClass + +
    +has related match + +
  • specificEpithet +
    • +has broader + +
  • label
    • +
  • preferred label +
    • +is identifier for + +
  • taxon +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    genus

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#genus +
    +preferred label + +genus +
    +alternative label + +genus +
    +description + +Genus of the taxon without authorship. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • genus +
    • +has broader + +
  • label
    • +
  • preferred label +
    • +is identifier for + +
  • taxon +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    family

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#family +
    +preferred label + +family +
    +alternative label + +family +
    +description + +Family of the taxon. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • family +
    • +has broader + +
  • label
    • +
  • preferred label +
    • +is identifier for + +
  • taxon +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    taxon distribution

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxon_distribution +
    +preferred label + +taxon distribution +
    +alternative label + +taxon_distribution +
    +description + +Known distribution of the taxon, by Australian state. +
    +computational entity + +database column +
    +organizedInClass + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    establishment means

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#establishment_means +
    +preferred label + +establishment means +
    +alternative label + +establishment_means +
    +description + +Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • establishmentMeans +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    taxonomic status

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxonomic_status +
    +preferred label + +taxonomic status +
    +alternative label + +taxonomic_status +
    +description + +The status of the use of the scientificName as a label for the taxon in regard to the ‘accepted (or valid) taxonomy’. The assigned taxonomic status must be linked to a specific taxonomic reference that defines the concept. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • taxonomicStatus +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    taxon id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxon_id +
    +preferred label + +taxon id +
    +alternative label + +taxon_id +
    +description + +An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • taxonID +
    • +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • taxon name +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +anyURI +
    +
    +

    +
    +
    +

    scientific name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#scientific_name +
    +preferred label + +scientific name +
    +alternative label + +scientific_name +
    +description + +The full scientific name, with authorship and date information if known. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • scientificName +
    • +has unique identifier + +
  • scientific name id +
    • +is unique identifier for + +
  • taxon +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    scientific name id

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#scientific_name_id +
    +preferred label + +scientific name id +
    +alternative label + +scientific_name_id +
    +description + +An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • scientificNameID +
    • +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • scientific name +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +anyURI +
    +
    +

    +
    +
    +

    taxon

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#taxon +
    +preferred label preferred label + +taxon taxon +
    +alternative label alternative label + +taxon taxon +
    +description description + +A circumscribed set of organisms. A group of organisms assumed to form a homogeneous unit with regard to associated trait measurements. +
    +computational entity computational entity + +database entry database column +
    +organizedInClass + +
    +has exact match + +
  • Taxon +
    • +has broader + +
  • Entity
    • +
  • Characteristic +
    • +has unique identifier + +
  • taxon name
    • +
  • scientific name
    • +
  • scientific name id
    • +
  • taxon id +
    • +has identifier + +
  • original taxon name
    • +
  • trinomial
    • +
  • binomial
    • +
  • genus
    • +
  • family +
    • +has property + +
  • taxon distribution
    • +
  • establishment means +
    • +created created + +01 February 2024 01 February 2024 +
    +is in scheme is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +
    +
    +

    contributors table

    +

    +
    +
    +

    last name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#last_name +
    +preferred label + +last name +
    +alternative label + +last_name +
    +description + +Last name of the data collector. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • family name +
    • +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • contributor +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +Name +
    +
    +

    +
    +
    +

    given name

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#given_name +
    +preferred label + +given name +
    +alternative label + +given_name +
    +description + +Given names of the data collector. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • given name +
    • +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • contributor +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +Name +
    +
    +

    +
    +
    +

    ORCID identifier

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#ORCID +
    +preferred label + +ORCID identifier +
    +alternative label + +ORCID +
    +description + +ORCID (Open Researcher and Contributor ID) for the data collector, if available. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • ORCID identifier +
    • +has broader + +
  • Identifier +
    • +is unique identifier for + +
  • contributor +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +anyURI +
    +
    +

    +
    +
    +

    affiliation

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#affiliation +
    +preferred label + +affiliation +
    +alternative label + +affiliation +
    +description + +Affiliation of data collector. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • has Contributor Affiliation +
    • +is annotation of + +
  • contributor +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    additional role

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#additional_role +
    +preferred label + +additional role +
    +alternative label + +additional_role +
    +description + +Any additional roles the data collector had in the study, a field most frequently used to identify which data contributor is the contact person for the dataset. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Contributor Role +
    • +is annotation of + +
  • contributor +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +
    +
    +

    definitions table

    +

    +
    +
    +

    trait concept

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#trait +
    +preferred label + +trait concept +
    +alternative label + +trait +
    +description + +A collection of trait values pertaining to a distinct characteristic of a specific part of an organism (cell, tissue, organ, or whole organism). +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • Standard +
    • +has unique identifier + +
  • trait identifier +
    • +has annotation + +
  • trait name
    • +
  • label +
    • +has property + +
  • max allowed values
    • +
  • min allowed values
    • +
  • allowed categorical values
    • +
  • units
    • +
  • type +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    trait identifier

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#trait_concept_URI +
    +preferred label + +trait identifier +
    +alternative label + +trait_concept_URI +
    +description + +Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • traitID
    • +
  • identifier +
    • +is unique identifier for + +
  • trait concept +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +anyURI +
    +
    +

    +
    +
    +

    label

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#label +
    +preferred label + +label +
    +alternative label + +label +
    +description + +A concise English label for the trait. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • label
    • +
  • preferred label
    • +
  • trait +
    • +refers to + +
  • trait concept +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    description

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#description +
    +preferred label + +description +
    +alternative label + +description +
    +description + +A short description, generally ranging from 1-3 sentences that clearly indicates the trait’s scope. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • traitDescription
    • +
  • description +
    • +is annotation of + +
  • trait concept +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    comments

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#comments +
    +preferred label + +comments +
    +alternative label + +comments +
    +description + +Additional notes about the scope of the trait or acceptable methods. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • comment
    • +
  • comments +
    • +is annotation of + +
  • trait concept +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    max allowed values

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#allowed_values_max +
    +preferred label + +max allowed values +
    +alternative label + +allowed_values_max +
    +description + +An upper boundary for accepted numerical values. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • maxAllowedValue +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +decimal +
    +
    +

    +
    +
    +

    min allowed values

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#allowed_values_min +
    +preferred label + +min allowed values +
    +alternative label + +allowed_values_min +
    +description + +A lower boundary for accepted numerical values. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • minAllowedValue +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +decimal +
    +
    +

    +
    +
    +

    units

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#units +
    +preferred label + +units +
    +alternative label + +units +
    +description + +The preferred units for the trait, conforming to the Unified Code for Units of Measure (UCUM). There are often two entries for units, one that is a string and the second which links to a units of measurement axiom. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • expectedUnit +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    allowed categorical values

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#allowed_values_levels +
    +preferred label + +allowed categorical values +
    +alternative label + +allowed_values_levels +
    +description + +Allowed trait values for a categorical trait, including a brief description of the value. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • has narrower
    • +
  • factorLevels +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +

    +
    +
    +

    type

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#type +
    +preferred label + +type +
    +alternative label + +type +
    +description + +Type of trait, specifying if traits are categorical, numeric, or ordinal. +
    +computational entity + +database column +
    +organizedInClass + +
    +has exact match + +
  • valueType +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +datatype + +string +
    +
    +
    +
    +
    +

    Database Table Entries

    +

    Single, implicitly structured data items in a table.

    +

    +
    +

    context

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#context +
    +preferred label + +context +
    +alternative label + +context +
    +description + +The situation within which a trait measurement is made, which can help explain the measured trait value. +
    +computational entity + +database entry +
    +has broader + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    entity

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#entity +
    +preferred label + +entity +
    +alternative label + +entity +
    +description + +An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity. +
    +computational entity + +database entry +
    +has exact match + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    individual

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#individual +
    +preferred label + +individual +
    +alternative label + +individual +
    +description + +An individual living organism. +
    +computational entity + +database entry +
    +has exact match + +
    +has broader + +
  • Entity +
    • +has context + +
  • life stage +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    location

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#location +
    +preferred label + +location +
    +alternative label + +location +
    +description + +A spatial region or named place. +
    +computational entity + +database entry +
    +has exact match + +
    +has broader + +
  • Entity +
    • +has unique identifier + +
  • location id +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    method context

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#method_context +
    +preferred label + +method context +
    +alternative label + +method_context +
    +description + +A compment of a trait measurement protocol that is changed between individual trait measurements and might cause the measured trait values of individuals or populations to change. +
    +computational entity + +database entry +
    +has broader + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    plot context

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#plot +
    +preferred label + +plot context +
    +alternative label + +plot +
    +description + +A subdivision of a location, designated because some properties differ across plots within a location, which might cause differences in measured trait values between plots. +
    +computational entity + +database entry +
    +has broader + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    population

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#population +
    +preferred label + +population +
    +alternative label + +population +
    +description + +A collection of organisms, all of the same species, that live in the same place. +
    +computational entity + +database entry +
    +has exact match + +
    +has broader + +
  • Entity +
    • +has context + +
  • life stage +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    temporal context

    +
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    +Property + +Value +
    +URI + +w3id.org/traits.build#temporal_context +
    +preferred label + +temporal context +
    +alternative label + +temporal_context +
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    +
    +

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    treatment context

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#treatment +
    +preferred label + +treatment context +
    +alternative label + +treatment +
    +description + +An experimental manipulation that subjects different individuals or populations to different conditions, which can lead to differences in measured trait values across treatments. +
    +computational entity + +database entry +
    +has broader + +
    +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +
    +
    +
    +

    Rows within a database table

    +

    Rows or clusters of rows within a database table that represent measurements, observations or observation collections.

    +

    +
    +

    dataset

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#dataset +
    +preferred label + +dataset +
    +alternative label + +dataset +
    +description + +13 relational tables and lists containing all data about a dataset. +
    +computational entity + +database +
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  • dataset id +
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    +is in scheme + +w3id.org/traits.build +
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    +Property + +Value +
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    +preferred label + +measurement +
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    +Property + +Value +
    +URI + +w3id.org/traits.build#measurement_of_entity_context_property +
    +preferred label + +measurement of entity context property +
    +alternative label + +measurement_of_entity_context_property +
    +description + +A measurement made on an entity context property. +
    +computational entity + +database row +
    +has broader + +
    +has unique identifier + +
  • entity context id +
    • +measurement for + +
  • observation of entity context +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
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    +

    +
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    measurement of location property

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#measurement_of_location_property +
    +preferred label + +measurement of location property +
    +alternative label + +measurement_of_location_property +
    +description + +A measurement made on a location property. +
    +computational entity + +database row +
    +has broader + +
    +has value + +
  • location property value +
    • +measurement for + +
  • observation of location
    • +
  • observations at location +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    measurement of plot context property

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#measurement_of_plot_context_property +
    +preferred label + +measurement of plot context property +
    +alternative label + +measurement_of_plot_context_property +
    +description + +A measurement made on a plot context property. +
    +computational entity + +database row +
    +has broader + +
    +has unique identifier + +
  • plot context id +
    • +measurement for + +
  • observation of plot context +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    measurement of temporal context property

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#measurement_of_temporal_context_property +
    +preferred label + +measurement of temporal context property +
    +alternative label + +measurement_of_temporal_context_property +
    +description + +A measurement made on a temporal context property. +
    +computational entity + +database row +
    +has broader + +
    +has unique identifier + +
  • temporal context id +
    • +measurement for + +
  • observation of temporal context +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    measurement of treatment context property

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#measurement_of_treatment_context_property +
    +preferred label + +measurement of treatment context property +
    +alternative label + +measurement_of_treatment_context_property +
    +description + +A measurement made on a treatment context property. +
    +computational entity + +database row +
    +has broader + +
    +has unique identifier + +
  • treatment context id +
    • +has value + +
  • context property value +
    • +measurement for + +
  • observation of a treatment context +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observation

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observation +
    +preferred label + +observation +
    +alternative label + +observation +
    +description + +An Observation is a collection of measurements made at a single point in time. In traits.build it is the subset of rows within the traits data that are made on the same entity and share the same observation_id. +
    +comment + +An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single "observation event". Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism. +
    +computational entity + +database table +
    +has exact match + +
    +has unique identifier + +
  • observation id +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observation of entity context

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    +Property + +Value +
    +URI + +w3id.org/traits.build#observation_of_entity_context +
    +preferred label + +observation of entity context +
    +alternative label + +observation_of_entity_context +
    +description + +Observation where entity is a category of context indicating repeat observations have been made on an individual, population or species-level entity across time which might affect the entity’s measured trait values. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • entity context id +
    • +of entity + +
  • individual
    • +
  • population
    • +
  • taxon +
    • +has measurement + +
  • measurement of entity context property +
    • +characteristic for + +
  • entity context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observation of location

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observation_of_location +
    +preferred label + +observation of location +
    +alternative label + +observation_of_location +
    +description + +Observation of location properties at a single location. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • location id +
    • +of entity + +
  • location +
    • +has measurement + +
  • measurement of location property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observation of plot context

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observation_of_plot_context +
    +preferred label + +observation of plot context +
    +alternative label + +observation_of_plot_context +
    +description + +Observation where entity is a category of context indicating variation across plots at a single location might affect the trait values measured on individual or population-level entities. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • plot context id +
    • +of entity + +
  • plot context +
    • +has measurement + +
  • measurement of plot context property +
    • +characteristic for + +
  • plot context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observation of temporal context

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observation_of_temporal_context +
    +preferred label + +observation of temporal context +
    +alternative label + +observation_of_temporal_context +
    +description + +Observation where entity is a category of context indicating repeat observations have been made on a plot, which might affect the trait values measured on individual or population-level entities. +
    +comment + +Examples of temporal contexts are sampling season, sampling time of day, and sequential observation numbers without any linked categorical description. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • temporal context id +
    • +of entity + +
  • temporal context +
    • +has measurement + +
  • measurement of temporal context property +
    • +characteristic for + +
  • temporal context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observation of a treatment context

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    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observation_of_treatment_context +
    +preferred label + +observation of a treatment context +
    +alternative label + +observation_of_treatment_context +
    +description + +Observation where entity is a context indicating experimental manipulations that might affect the trait values measured on an individual, population or species-level entities. +
    +comment + +Examples include growing temperature, growing CO2 concentrations, and nutrient amendments. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • treatment context id +
    • +of entity + +
  • treatment context +
    • +has measurement + +
  • measurement of treatment context property +
    • +characteristic for + +
  • treatment context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observations at location

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observations_at_location +
    +preferred label + +observations at location +
    +alternative label + +observations_at_location +
    +description + +Observation collection of location properties and organismal traits at a single location. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • location id +
    • +of entity + +
  • location
    • +
  • population
    • +
  • individual +
    • +has measurement + +
  • measurement of location property
    • +
  • trait measurement +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observations from dataset

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observations_from_dataset +
    +preferred label + +observations from dataset +
    +alternative label + +observations_from_dataset +
    +description + +Observation collection encompassing all observations that comprise a dataset. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • dataset id +
    • +of entity + +
  • dataset +
    • +has measurement + +
  • trait measurement
    • +
  • measurement of location property
    • +
  • measurement of treatment context property
    • +
  • measurement of plot context property
    • +
  • measurement of entity context property
    • +
  • measurement of temporal context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observations from source

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observations_from_source +
    +preferred label + +observations from source +
    +alternative label + +observations_from_source +
    +description + +Observation collection encompassing all observations for a single published or unpublished source. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • source id +
    • +of entity + +
  • source primary citation +
    • +has measurement + +
  • trait measurement
    • +
  • measurement of location property
    • +
  • measurement of treatment context property
    • +
  • measurement of plot context property
    • +
  • measurement of entity context property
    • +
  • measurement of temporal context property +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observations of individual

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observations_of_individual +
    +preferred label + +observations of individual +
    +alternative label + +observations_of_individual +
    +description + +Observation collection encompassing all observations on a single individual. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • individual id +
    • +of entity + +
  • individual +
    • +has measurement + +
  • trait measurement +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observations of population

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observations_of_population +
    +preferred label + +observations of population +
    +alternative label + +observations_of_population +
    +description + +Observation collection encompassing all observations on a single population. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • population id +
    • +of entity + +
  • population +
    • +has measurement + +
  • trait measurement +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    observations of taxon

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#observations_of_taxon +
    +preferred label + +observations of taxon +
    +alternative label + +observations_of_taxon +
    +description + +Observation collection encompassing all observations on a single taxon within a single dataset. +
    +comment + +An observation collection is a container for a set of observations. +
    +computational entity + +database table +
    +has broader + +
    +has unique identifier + +
  • taxon name +
    • +of entity + +
  • taxon +
    • +has measurement + +
  • trait measurement +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +

    +
    +
    +

    trait measurement

    +
    + + + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Property + +Value +
    +URI + +w3id.org/traits.build#trait_measurement +
    +preferred label + +trait measurement +
    +alternative label + +trait_measurement +
    +description + +A measurement made on a trait. +
    +computational entity + +database row +
    +has broader + +
    +has value + +
  • value +
    • +measurement for + +
  • observation
    • +
  • observations from dataset
    • +
  • observations from source
    • +
  • observations of taxon
    • +
  • observations at location
    • +
  • observations of population
    • +
  • observations of individual +
    • +created + +01 February 2024 +
    +is in scheme + +w3id.org/traits.build +
    +
    +
    +
    +
    +
    +

    3. Acknowledgements

    +

    We are grateful to S Cox, J Smillie, K Levett, M Barlow, and C Brady for useful conversations. The AusTraits project received investment (https://doi.org/10.47486/TD044, https://doi.org/10.47486/DP720) from the Australian Research Data Commons (ARDC). The ARDC is funded by the National Collaborative Research Infrastructure Strategy (NCRIS).

    +
    + + + + +
    + + + + + \ No newline at end of file diff --git a/ontology/output/ontology/release/1.0.0/traits.build.json b/ontology/output/ontology/release/1.0.0/traits.build.json new file mode 100644 index 00000000..362d3c53 --- /dev/null +++ b/ontology/output/ontology/release/1.0.0/traits.build.json @@ -0,0 +1,7805 @@ +{ + "@graph": [ + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Provides an identifying sequence of characters to refer to an entity within a context. An Identifier can be unique within a local context or a global context." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Identifier" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#BaseCharacteristicQualifier", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A base qualifier denotes a simple, atomic qualifier such as average, minimum, and maximum." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Base Characteristic Qualifier" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Characteristic", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A characteristic represents a property of an entity that can be measured (e.g., height, length, or color). A characteristic of an entity is observed through a measurement, which further asserts a value of the characteristic for the entity. A characteristic type (e.g., 'height') can be associated with many different entities, whereas an individual characteristic (a particular occurrence of the 'height' characteristic) is associated to exactly one entity." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Characteristic" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Entity", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Entity" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#MeasuredValue", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A measurement value is a quantitative or qualitative result of a measurement. Measurement values can contain a coded representation of the result, e.g., as a number or string." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Measured Value" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Measurement", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A measurement is an assertion that a characteristic of an entity had a particular value with respect to an observation event. A measurement is comprised of a characteristic, a value, a measurement standard, and a protocol. Measurements can also have precision as well as a description of the methods used. Measurements can encapsulate characteristics that were recorded, but not necessarily measured in a physical sense. For example, the name of a location and a taxon can be captured through measurements." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Measurement" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#MeasurementType", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A MeasurementType describes the type of a Measurement in which the Measurement would follow the associated Protocol to record the value of the associated Characteristic of the associated Entity using the associated Standard. Any of these associated properties may be omitted, in which case the MeasurementType is only constrained by the provided associations. A MeasurementType is a hypothetical construct, in that it is not associated with a particular instance of a Measurement." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Measurement Type" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single 'observation event'. Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Observation" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ObservationCollection", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An observation collection is a container for a set of observations." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Observation Collection" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Protocol", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A protocol is a procedure for generating or processing data." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Protocol" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Standard", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A standard defines a reference for comparing or naming entities via a measurement. A standard can be defined intentionally (e.g., as in the case of units) or extensionally (by listing the values of the standard, e.g., for color this might be red, blue, yellow, etc)." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Standard" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Unit", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unit is a standard quantification for physical measurements. A unit is either a base unit, a composite unit, or a derived unit." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Unit" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The characteristicFor property gives the entity of the characteristic." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "characteristic for" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The hasContext property asserts that one observation serves as the context for another observation. In a hasContext property the domain is the observation being contextualized and the range is the context. Context defines a semantic relationship between two entities that is a fundamental aspect of the observations, but not necessarily of the entities themselves. For example, most measurements are accomplished in a spatio-temporal framework that might be valuable context. The assertions made by contextual observations are assumed of the contextualized observations. Context is a transitive relationship." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has context" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The hasMeasurement property gives the measurements of the observed entity." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has measurement" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasValue", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The hasValue property gives the value of the measurement." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has value" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#measurementFor", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The measurementFor property gives the observation (observed entitiy) that a measurement is associated with. Each measurement is for exactly one observation." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "measurement for" + } + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The ofEntity property gives the observed entity of an observation." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "of entity" + } + }, + { + "@id": "http://purl.obolibrary.org/obo/IAO_0000708", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.obolibrary.org/obo/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "ORCID identifier" + } + }, + { + "@id": "http://purl.obolibrary.org/obo/IAO_0020016", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.obolibrary.org/obo/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "given name" + } + }, + { + "@id": "http://purl.obolibrary.org/obo/IAO_0020017", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.obolibrary.org/obo/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "family name" + } + }, + { + "@id": "http://purl.obolibrary.org/obo/OBI_0100026", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.obolibrary.org/obo/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "organism" + } + }, + { + "@id": "http://purl.obolibrary.org/obo/PCO_0000001", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A collection of organisms, all of the same species, that live in the same place." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.obolibrary.org/obo/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "population" + } + }, + { + "@id": "http://purl.org/dc/terms/bibliographicCitation", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A bibliographic reference for the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "bibliographic citation" + } + }, + { + "@id": "http://purl.org/dc/terms/contributor", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An entity responsible for making contributions to the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "contributor" + } + }, + { + "@id": "http://purl.org/dc/terms/created", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Date of creation of the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "created" + } + }, + { + "@id": "http://purl.org/dc/terms/creator", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An entity responsible for making contributions to the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "creator" + } + }, + { + "@id": "http://purl.org/dc/terms/description", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "description" + } + }, + { + "@id": "http://purl.org/dc/terms/identifier", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An unambiguous reference to the resource within a given context." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "identifier" + } + }, + { + "@id": "http://purl.org/dc/terms/issued", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Date of formal issuance of the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "issued" + } + }, + { + "@id": "http://purl.org/dc/terms/license", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A legal document giving official permission to do something with the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "license" + } + }, + { + "@id": "http://purl.org/dc/terms/location", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A spatial region or named place." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "location" + } + }, + { + "@id": "http://purl.org/dc/terms/publisher", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An entity responsible for making the resource available." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "publisher" + } + }, + { + "@id": "http://purl.org/dc/terms/title", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A name given to the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://purl.org/dc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "title" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/Taxon", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A group of organisms (sensu http://purl.obolibrary.org/obo/OBI_0100026) considered by taxonomists to form a homogeneous unit." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Taxon" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/acceptedNameUsage", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The full name, with authorship and date information if known, of the currently valid (zoological) or accepted (botanical) dwc:Taxon." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "The full scientific name, with authorship and date information if known, of the accepted (botanical) or valid (zoological) name in cases where the provided dwc:scientificName is considered by the reference indicated in the dwc:accordingTo property, or of the content provider, to be a synonym or misapplied name. When applied to a dwc:Organism or dwc:Occurrence, this term should be used in cases where a content provider regards the provided dwc:scientificName to be inconsistent with the taxonomic perspective of the content provider. For example, there are many discrepancies within specimen collections and observation datasets between the recorded name (e.g., the most recent identification from an expert who examined a specimen, or a field identification for an observed dwc:Organism), and the name asserted by the content provider to be taxonomically accepted." + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "acceptedNameUsage" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Used to organize properties within classes for easier human understanding." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/attributes/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "organizedInClass" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/basisOfRecord", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The specific nature of the data record." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Recommended best practice is to use a controlled vocabulary such as the set of local names of the identifiers for classes in Darwin Core." + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "basisOfRecord" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/datasetID", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An identifier for the set of data. May be a global unique identifier or an identifier specific to a collection or institution." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "datasetID" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/decimalLatitude", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The geographic latitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "decimalLatitude" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/decimalLongitude", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "decimalLongitude" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/establishmentMeans", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "establishmentMeans" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/family", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The full scientific name of the family in which the taxon is classified." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "family" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/genus", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The full scientific name of the genus in which the dwc:Taxon is classified." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "genus" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/identificationQualifier", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A brief phrase or a standard term ('cf.', 'aff.') to express the determiner's doubts about the dwc:Identification." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "identificationQualifier" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/infraspecificEpithet", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The name of the lowest or terminal infraspecific epithet of the dwc:scientificName, excluding any rank designation." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://rs.tdwg.org/dwc/terms/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "infraspecificEpithet" + } + }, + { + "@id": "http://rs.tdwg.org/dwc/terms/lifeStage", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The age class or life stage of the dwc:Organism(s) at the time the dwc:Occurrence was recorded." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Recommended best practice is to use a controlled vocabulary. 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"en", + "@value": "datasetDescription" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/eventDate", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E). For lower precision, use year, month and day field instead." + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "eventDate" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/expectedUnit", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The unit expected for measurement entries." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Only applies to numerical traits. Should be given in SI units." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "expectedUnit" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/factorLevels", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A comma separated list of terms comprising the constrained vocabulary for categorical traits or ordinal binary traits." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Ordinal traits may be encoded with numerically indexed factor levels; e.g.�1_egg, 2_larvae, 3_pupae, 4_adult; the field traitDescription should define the factor levels;" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "factorLevels" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/identifier", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique identifier for the trait; globally unique or dataset-specific" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Identifiers are ideally globally unique and stable URIs which link to the source of the trait description in a public ontology or thesaurus of traits;" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "identifier" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/individualCount", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "If measurement is an aggregate measure of multiple individuals or specimens, report number of specimens as count, i.e. integer number. Defaults to 1" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "individualCount" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/maxAllowedValue", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An upper boundary for accepted numerical values." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude, or constrain entries to positive values." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "maxAllowedValue" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/minAllowedValue", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A lower boundary for accepted numerical values." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "minAllowedValue" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/trait", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A descriptive trait name." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Trait names should be unique but intuitively comprehensible. Additional specifications such as unit of measurement can be included in the name. Several words are separated by “_“." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "trait" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/traitDescription", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A short, unambiguous definition of the trait as used in the specific study context; may refer to a method of measurement; may copy the description of a public trait ontology;" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "The definition should make use of terms provided by existing public ontologies, e.g. 'the mass (PATO:mass), either fresh or dried, of a fruit (PO:fruit)'" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "traitDescription" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/traitID", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Examples: TO:0000181; TOP103; http://top-thesaurus.org/annotationInfo?viz=1&&trait=Seed_mass;" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "traitID" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/traitUnit", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus." + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "traitUnit" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/traitValue", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Standardized measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits." + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "traitValue" + } + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/valueType", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Type of trait values. Possible entries are 'numeric', 'integer', 'categorical', 'ordinal', 'logical', or 'character'." + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Numerical values represent measurements of length, volumes, ratios, rates or timespans. Integer values apply to count data (e.g. eggs per clutch). Binary data (encoded as 0 or 1) or logical data (coded as TRUE or FALSE) may apply to qualitative traits such as specific behavior during mating (e.g. are territories defended) or specialization to a given habitat (e.g. species restricted to relicts of primeval forests). Categorical traits should define a constrained set of factor levels, such as sex differences in wing morphology (both sexes winged, both sexes unwinged, only males winged, only females winged) or unconstrained entries such as color. Ordinal categorical traits may be better encoded as integer values, e.g. a logical sequence as in the case of life stages or hibernation stages, or habitat preference traits such as horizontal stratum use." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://terminologies.gfbio.org/terms/ETS/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "valueType" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/Cites", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "indicates that A includes B in a citation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Cites" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/Compiles", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "indicates B is the result of a compile or creation event using A" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Compiles" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/ContactPerson", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Person with knowledge of how to access, troubleshoot, or otherwise field issues related to the resource" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Contact Person" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/ContributorRole", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The role of the contributor in bringing the described dataset into existence." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Contributor Role" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/DataCollector", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Person/institution responsible for finding, gathering/collecting data under the guidelines of the author(s) or Principal Investigator (PI)" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Data Collector" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/DataCurator", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Person tasked with reviewing, enhancing, cleaning, or standardizing metadata and the associated data submitted for storage, use, and maintenance within a data centre or repository" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Data Curator" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/HasMetadata", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "indicates resource A has additional metadata B" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Has Metadata" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/HasVersion", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "indicates A has a version (B)" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Has Version" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/IsCitedBy", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "indicates that B includes A in a citation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Is Cited By" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/IsCompiledBy", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "indicates B is used to compile or create A" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Is Compiled By" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/IsMetadataFor", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "indicates additional metadata A for a resource B" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Is Metadata For" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/RelatedPerson", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A person without a specifically defined role in the development of the resource, but who is someone the author wishes to recognize." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Related Person" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/RightsHolder", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Person or institution owning or managing property rights, including intellectual property rights over the resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Rights Holder" + } + }, + { + "@id": "http://vocab.fairdatacollective.org/gdmt/hasContributorAffiliation", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The organizational or institutional affiliation of the contributor." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://vocab.fairdatacollective.org/gdmt/" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has Contributor Affiliation" + } + }, + { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Datatype is the class of datatypes. All instances of rdfs:Datatype correspond to the RDF model of a datatype described in the RDF Concepts specification [RDF12-CONCEPTS]. rdfs:Datatype is both an instance of and a subclass of rdfs:Class. Each instance of rdfs:Datatype is a subclass of rdfs:Literal." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "datatype" + } + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#comment", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2000/01/rdf-schema#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "comment" + } + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2000/01/rdf-schema#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "label" + } + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#subClassOf", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2000/01/rdf-schema#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "sub class of" + } + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#type", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The subject is an instance of a class." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2000/01/rdf-schema#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "type" + } + }, + { + "@id": "http://www.w3.org/2001/XMLSchema#Name", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2001/XMLSchema" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "Name" + } + }, + { + "@id": "http://www.w3.org/2001/XMLSchema#anyURI", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2001/XMLSchema" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "anyURI" + } + }, + { + "@id": "http://www.w3.org/2001/XMLSchema#date", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2001/XMLSchema" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "date" + } + }, + { + "@id": "http://www.w3.org/2001/XMLSchema#decimal", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2001/XMLSchema" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "decimal" + } + }, + { + "@id": "http://www.w3.org/2001/XMLSchema#int", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2001/XMLSchema" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "integer" + } + }, + { + "@id": "http://www.w3.org/2001/XMLSchema#string", + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2001/XMLSchema" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "string" + } + }, + { + "@id": "http://www.w3.org/2002/07/owl#sameAs", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The property that determines that two given individuals are equal." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2002/07/owl" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "sameAs" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#ConceptScheme", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "skos:ConceptScheme is an instance of owl:Class." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "concept scheme" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#altLabel", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An alternative lexical label for a resource." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "alternative label" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#broader", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Relates a concept to a concept that is more general in meaning." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has broader" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#closeMatch", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "skos:closeMatch is used to link two concepts that are sufficiently similar that they can be used interchangeably in some information retrieval applications. In order to avoid the possibility of compound errors when combining mappings across more than two concept schemes, skos:closeMatch is not declared to be a transitive property." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has close match" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#exactMatch", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "skos:exactMatch is used to link two concepts, indicating a high degree of confidence that the concepts can be used interchangeably across a wide range of information retrieval applications." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has exact match" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#hasTopConcept", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "used to link a concept scheme to the SKOS concept(s) which are topmost in the hierarchical relations for that scheme" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has top concept" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#inScheme", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Relates a resource (for example a concept) to a concept scheme in which it is included." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "is in scheme" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#narrower", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Relates a concept to a concept that is more specific in meaning." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has narrower" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The preferred lexical label for a resource, in a given language." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "preferred label" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#relatedMatch", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "skos:relatedMatch is used to state an associative mapping link between two conceptual resources in different concept schemes." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "has related match" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#scopeNote", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A note that helps to clarify the meaning and/or the use of a concept." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "scope note" + } + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#topConceptOf", + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Relates a concept to the concept scheme that it is a top level concept of." + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "http://www.w3.org/2004/02/skos/core#" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "is top concept in scheme" + } + }, + { + "@id": "https://w3id.org/traits.build", + "http://purl.org/dc/terms/created": "01 February 2024^^", + "http://purl.org/dc/terms/creator": [ + "Sophie Yang", + "Elizabeth Wenk", + "Daniel Falster" + ], + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The traits.build ontology documents the output structure of a database built using the {traits.build} R package." + }, + "http://purl.org/dc/terms/license": { + "@type": "xsd:anyURI", + "@value": "" + }, + "http://purl.org/dc/terms/publisher": { + "@type": "xsd:anyURI", + "@value": "" + }, + "http://purl.org/dc/terms/title": { + "@language": "en", + "@value": "traits.build" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "traits.build" + }, + "http://www.w3.org/2000/01/rdf-schema#type": { + "@id": "http://www.w3.org/2004/02/skos/core#ConceptScheme" + }, + "http://www.w3.org/2004/02/skos/core#hasTopConcept": { + "@type": "xsd:anyURI", + "@value": "" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "traits.build" + } + }, + { + "@id": "https://w3id.org/traits.build#ORCID", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "ORCID (Open Researcher and Contributor ID) for the data collector, if available." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-contributors" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#contributor" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#anyURI" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "ORCID identifier" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://purl.obolibrary.org/obo/IAO_0000708" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "ORCID" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://purl.obolibrary.org/obo/IAO_0000708" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "ORCID identifier" + } + }, + { + "@id": "https://w3id.org/traits.build#additional_role", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Any additional roles the data collector had in the study, a field most frequently used to identify which data contributor is the contact person for the dataset." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-contributors" + }, + "http://semanticscience.org/resource/SIO_000254": { + "@id": "https://w3id.org/traits.build#contributor" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "additional role" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://vocab.fairdatacollective.org/gdmt/ContributorRole" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "additional_role" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://vocab.fairdatacollective.org/gdmt/ContributorRole" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "additional role" + } + }, + { + "@id": "https://w3id.org/traits.build#affiliation", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Affiliation of data collector." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-contributors" + }, + "http://semanticscience.org/resource/SIO_000254": { + "@id": "https://w3id.org/traits.build#contributor" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "affiliation" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://vocab.fairdatacollective.org/gdmt/hasContributorAffiliation" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "affiliation" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://vocab.fairdatacollective.org/gdmt/hasContributorAffiliation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "affiliation" + } + }, + { + "@id": "https://w3id.org/traits.build#aligned_name", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The taxon name without authorship after implementing automated syntax standardisation and spelling changes as well as manually encoded syntax alignments for this taxon in the metadata file for the corresponding `dataset_id`. This name has not yet been matched to the currently accepted (botanical) or valid (zoological) taxon name in cases where there are taxonomic synonyms, isonyms, orthographic variants, etc." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-taxonomic_updates" + }, + "http://semanticscience.org/resource/SIO_000223": { + "@id": "https://w3id.org/traits.build#taxonomic_resolution" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000641": { + "@id": "https://w3id.org/traits.build#original_name" + }, + "http://semanticscience.org/resource/SIO_000642": { + "@id": "https://w3id.org/traits.build#taxon_name" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "aligned name" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "aligned_name" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "aligned name" + } + }, + { + "@id": "https://w3id.org/traits.build#allowed_values_levels", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Allowed trait values for a categorical trait, including a brief description of the value." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-definitions" + }, + "http://semanticscience.org/resource/SIO_000224": { + "@id": "https://w3id.org/traits.build#trait" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "allowed categorical values" + }, + "http://www.w3.org/2002/07/owl#sameAs": [ + { + "@id": "http://terminologies.gfbio.org/terms/ETS/factorLevels" + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#narrower" + } + ], + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "allowed_values_levels" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://terminologies.gfbio.org/terms/ETS/factorLevels" + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#narrower" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "allowed categorical values" + } + }, + { + "@id": "https://w3id.org/traits.build#allowed_values_max", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An upper boundary for accepted numerical values." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-definitions" + }, + "http://semanticscience.org/resource/SIO_000224": { + "@id": "https://w3id.org/traits.build#trait" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#decimal" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "max allowed values" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://terminologies.gfbio.org/terms/ETS/maxAllowedValue" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "allowed_values_max" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://terminologies.gfbio.org/terms/ETS/maxAllowedValue" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "max allowed values" + } + }, + { + "@id": "https://w3id.org/traits.build#allowed_values_min", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A lower boundary for accepted numerical values." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-definitions" + }, + "http://semanticscience.org/resource/SIO_000224": { + "@id": "https://w3id.org/traits.build#trait" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#decimal" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "min allowed values" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://terminologies.gfbio.org/terms/ETS/minAllowedValue" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "allowed_values_min" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://terminologies.gfbio.org/terms/ETS/minAllowedValue" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "min allowed values" + } + }, + { + "@id": "https://w3id.org/traits.build#assistants", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "People who played a more minor role in data collection for the study." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-methods" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_001096": { + "@id": "https://w3id.org/traits.build#contributor" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "assistants" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://vocab.fairdatacollective.org/gdmt/RelatedPerson" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "assistants" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://purl.org/dc/terms/contributor" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://vocab.fairdatacollective.org/gdmt/RelatedPerson" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "assistants" + } + }, + { + "@id": "https://w3id.org/traits.build#basis_of_record", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A categorical variable specifying from which kind of specimen traits were recorded." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "basis of record" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "basis_of_record" + }, + "http://www.w3.org/2004/02/skos/core#closeMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/basisOfRecord" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "basis of record" + } + }, + { + "@id": "https://w3id.org/traits.build#basis_of_value", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A categorical variable describing how the trait value was obtained." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "basis of value" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#MeasurementType" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "basis_of_value" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": 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"@id": "http://purl.obolibrary.org/obo/IAO_0020016" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "given_name" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://purl.obolibrary.org/obo/IAO_0020016" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "given name" + } + }, + { + "@id": "https://w3id.org/traits.build#individual", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext": { + "@id": "https://w3id.org/traits.build#life_stage" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An individual 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"@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique integer identifier for an individual, with individuals numbered sequentially within each dataset by taxon by population grouping. Most often each row of data represents an individual, but in some datasets trait data collected on a single individual is presented across multiple rows of data, such as if the same trait is measured using different methods or the same individual is measured repeatedly across time." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#observations_of_individual" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#int" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "individual id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "individual_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "individual id" + } + }, + { + "@id": "https://w3id.org/traits.build#label", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A concise English label for the trait." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-definitions" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000628": { + "@id": "https://w3id.org/traits.build#trait" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "label" + }, + "http://www.w3.org/2002/07/owl#sameAs": [ + { + "@id": "http://terminologies.gfbio.org/terms/ETS/trait" + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label" + } + ], + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "label" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://terminologies.gfbio.org/terms/ETS/trait" + }, + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "label" + } + }, + { + "@id": "https://w3id.org/traits.build#last_name", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Last name of the data collector." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-contributors" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#contributor" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#Name" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "last name" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://purl.obolibrary.org/obo/IAO_0020017" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "last_name" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://purl.obolibrary.org/obo/IAO_0020017" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "last name" + } + }, + { + "@id": "https://w3id.org/traits.build#latitude", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#location" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-locations" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_001096": { + "@id": "https://w3id.org/traits.build#location_property" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#decimal" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "latitude (deg)" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/decimalLatitude" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "latitude" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://rs.tdwg.org/dwc/terms/measurementValue" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#MeasuredValue" + } + ], + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/decimalLatitude" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "latitude (deg)" + } + }, + { + "@id": "https://w3id.org/traits.build#life_stage", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#observation_of_entity_context" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A field to indicate the life stage or age class of the entity measured. Standard values are `adult`, `sapling`, `seedling` and `juvenile`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "life stage" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/lifeStage" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "life_stage" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://rs.tdwg.org/dwc/terms/measurementValue" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#MeasuredValue" + } + ], + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/lifeStage" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "life stage" + } + }, + { + "@id": "https://w3id.org/traits.build#location", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A spatial region or named place." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000756" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#location_id" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "location" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://purl.org/dc/terms/location" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "location" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Entity" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://purl.org/dc/terms/location" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "location" + } + }, + { + "@id": "https://w3id.org/traits.build#location_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique integer identifier for a location, with locations numbered sequentially within a dataset. The identifier links to specific information in the location table." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": [ + { + "@id": "https://w3id.org/traits.build#traits.build-locations" + }, + { + "@id": "https://w3id.org/traits.build#traits.build-traits" + } + ], + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#observations_at_location" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#int" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "location id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "location_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "location id" + } + }, + { + "@id": "https://w3id.org/traits.build#location_name", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The location name used by the data contributor or a generic location name designated by AusTraits when one is not provided." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-locations" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "location name" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "location_name" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "location name" + } + }, + { + "@id": "https://w3id.org/traits.build#location_property", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#location" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasValue": { + "@id": "https://w3id.org/traits.build#locations_value" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The location characteristic being recorded. The name should include units of measurement, e.g. `MAT (C)`. Ideally we have at least the following variables for each location, `longitude (deg)`, `latitude (deg)`, `description`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-locations" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "location property" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "location_property" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Characteristic" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "location property" + } + }, + { + "@id": "https://w3id.org/traits.build#locations_value", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The measured value of a location property." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-locations" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "location property value" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "value" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://rs.tdwg.org/dwc/terms/measurementValue" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#MeasuredValue" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "location property value" + } + }, + { + "@id": "https://w3id.org/traits.build#longitude", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#location" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-locations" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_001096": { + "@id": "https://w3id.org/traits.build#location_property" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#decimal" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "longitude (deg)" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/decimalLongitude" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "longitude" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://rs.tdwg.org/dwc/terms/measurementValue" + }, + { + "@id": 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In traits.build it is the subset of rows within the traits data that are made on the same entity and share the same observation_id." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#observation_id" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single "observation event". Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observation" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observation" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observation" + } + }, + { + "@id": "https://w3id.org/traits.build#observation_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique integral identifier for the observation, where an observation is all measurements made on an individual at a single point in time. It is important for joining traits coming from the same `observation_id`. Within each dataset, observation_id's are unique combinations of `taxon_name`, `population_id`, `individual_id`, and `temporal_context_id`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#observation" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observation id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observation_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observation id" + } + }, + { + "@id": "https://w3id.org/traits.build#observation_of_entity_context", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#entity_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement": { + "@id": "https://w3id.org/traits.build#measurement_of_entity_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity": [ + { + "@id": "https://w3id.org/traits.build#taxon" + }, + { + "@id": "https://w3id.org/traits.build#population" + }, + { + "@id": "https://w3id.org/traits.build#individual" + } + ], + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Observation where entity is a category of context indicating repeat observations have been made on an individual, population or species-level entity across time which might affect the entity's measured trait values." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#entity_context_id" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observation of entity context" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observation_of_entity_context" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observation of entity context" + } + }, + { + "@id": "https://w3id.org/traits.build#observation_of_location", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement": { + "@id": "https://w3id.org/traits.build#measurement_of_location_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity": { + "@id": "https://w3id.org/traits.build#location" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Observation of location properties at a single location." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#location_id" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observation of location" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observation_of_location" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observation of location" + } + }, + { + "@id": "https://w3id.org/traits.build#observation_of_plot_context", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#plot_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement": { + "@id": "https://w3id.org/traits.build#measurement_of_plot_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity": { + "@id": "https://w3id.org/traits.build#plot" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Observation where entity is a category of context indicating variation across plots at a single location might affect the trait values measured on individual or population-level entities." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#plot_context_id" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observation of plot context" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observation_of_plot_context" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observation of plot context" + } + }, + { + "@id": "https://w3id.org/traits.build#observation_of_temporal_context", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#temporal_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement": { + "@id": "https://w3id.org/traits.build#measurement_of_temporal_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity": { + "@id": "https://w3id.org/traits.build#temporal_context" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Observation where entity is a category of context indicating repeat observations have been made on a plot, which might affect the trait values measured on individual or population-level entities." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#temporal_context_id" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Examples of temporal contexts are `sampling season`, `sampling time of day`, and sequential `observation numbers` without any linked categorical description." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observation of temporal context" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observation_of_temporal_context" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observation of temporal context" + } + }, + { + "@id": "https://w3id.org/traits.build#observation_of_treatment_context", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor": { + "@id": "https://w3id.org/traits.build#treatment_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement": { + "@id": "https://w3id.org/traits.build#measurement_of_treatment_context_property" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity": { + "@id": "https://w3id.org/traits.build#treatment" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Observation where entity is a context indicating experimental manipulations that might affect the trait values measured on an individual, population or species-level entities." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#treatment_context_id" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Examples include growing temperature, growing CO2 concentrations, and nutrient amendments." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observation of a treatment context" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observation_of_treatment_context" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Observation" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observation of a treatment context" + } + }, + { + "@id": "https://w3id.org/traits.build#observations_at_location", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement": [ + { + "@id": "https://w3id.org/traits.build#trait_measurement" + }, + { + "@id": "https://w3id.org/traits.build#measurement_of_location_property" + } + ], + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity": [ + { + "@id": "https://w3id.org/traits.build#individual" + }, + { + "@id": "https://w3id.org/traits.build#population" + }, + { + "@id": "https://w3id.org/traits.build#location" + } + ], + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Observation collection of location properties and organismal traits at a single location." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + 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"http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observations_of_population" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ObservationCollection" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observations of population" + } + }, + { + "@id": "https://w3id.org/traits.build#observations_of_taxon", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement": { + "@id": "https://w3id.org/traits.build#trait_measurement" + }, + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ofEntity": { + "@id": "https://w3id.org/traits.build#taxon" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Observation collection encompassing all observations on a single taxon within a single dataset." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#taxon_name" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "An observation collection is a container for a set of observations." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "observations of taxon" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "observations_of_taxon" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#ObservationCollection" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "observations of taxon" + } + }, + { + "@id": "https://w3id.org/traits.build#original_name", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Name given to taxon in the original data supplied by the authors." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": [ + { + "@id": "https://w3id.org/traits.build#traits.build-taxonomic_updates" + }, + { + "@id": "https://w3id.org/traits.build#traits.build-traits" + } + ], + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "original taxon name" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "original_name" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "original taxon name" + } + }, + { + "@id": "https://w3id.org/traits.build#plot", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A subdivision of a location, designated because some properties differ across plots within a location, which might cause differences in measured trait values between plots." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000756" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "plot context" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "plot" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "https://w3id.org/traits.build#traits.build-contexts" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Entity" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "plot context" + } + }, + { + "@id": "https://w3id.org/traits.build#plot_context_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique integer identifier for a plot, where a plot is a distinct collection of organisms within a single geographic location, such as plants growing on different aspects or blocks in an experiment. The identifier links to specific information in the context table." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": [ + { + "@id": "https://w3id.org/traits.build#traits.build-contexts" + }, + { + "@id": "https://w3id.org/traits.build#traits.build-traits" + } + ], + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#measurement_of_plot_context_property" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#int" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "plot context id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "plot_context_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "plot context id" + } + }, + { + "@id": "https://w3id.org/traits.build#plot_context_property", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A context characteristic indicating stratified variation within a location that might affect the trait values measured on an individual or population-level entity." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-contexts" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#plot_context_id" + }, + "http://semanticscience.org/resource/SIO_001096": { + "@id": "https://w3id.org/traits.build#context_property" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "plot context property" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "https://w3id.org/traits.build#contexts_value" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "plot_context_property" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Characteristic" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://w3id.org/traits.build#contexts_value" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "plot context property" + } + }, + { + "@id": "https://w3id.org/traits.build#population", + "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext": { + "@id": "https://w3id.org/traits.build#life_stage" + }, + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A collection of organisms, all of the same species, that live in the same place." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000756" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "population" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://purl.obolibrary.org/obo/PCO_0000001" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "population" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Entity" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://purl.obolibrary.org/obo/PCO_0000001" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "population" + } + }, + { + "@id": "https://w3id.org/traits.build#population_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique integer identifier for a population, where a population is defined as individuals growing in the same location (location_id /location_name) and plot (plot_context_id, a context category) and being subjected to the same treatment (treatment_context_id, a context category)." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#observations_of_population" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#int" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "population id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "population_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "population id" + } + }, + { + "@id": "https://w3id.org/traits.build#repeat_measurements_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique integer identifier for repeat measurements of a trait that comprise a single observation, such as a response curve." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": [ + { + "@id": "https://w3id.org/traits.build#collection_date" + }, + { + "@id": "https://w3id.org/traits.build#observations_of_individual" + } + ], + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#int" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "repeat measurements id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "repeat_measurements_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "repeat measurements id" + } + }, + { + "@id": "https://w3id.org/traits.build#replicates", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Number of replicate measurements that comprise a recorded trait measurement. A numeric value (or range) is ideal and appropriate if the value type is a `mean`, `median`, `min` or  `max`. For these value types, if replication is unknown the entry should be `unknown`. If the value type is `raw_value` the replicate value should be 1. If the trait is categorical or the value indicates a measurement for an entire species (or other taxon) replicate value should be `.na`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#int" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "replicates" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://terminologies.gfbio.org/terms/ETS/individualCount" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "replicates" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://terminologies.gfbio.org/terms/ETS/individualCount" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "replicates" + } + }, + { + "@id": "https://w3id.org/traits.build#sampling_strategy", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "When available, this information is lifted verbatim from a published manuscript. For preserved specimens, this field ideally indicates which records were 'sampled' to measure a specific trait." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-methods" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000628": { + "@id": "https://w3id.org/traits.build#observations_from_dataset" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "dataset sampling strategy" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/samplingProtocol" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "sampling_strategy" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/samplingProtocol" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "dataset sampling strategy" + } + }, + { + "@id": "https://w3id.org/traits.build#scientific_name", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The full scientific name, with authorship and date information if known." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-taxa" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#scientific_name_id" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#taxon" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "scientific name" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/scientificName" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "scientific_name" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/scientificName" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "scientific name" + } + }, + { + "@id": "https://w3id.org/traits.build#scientific_name_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-taxa" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#scientific_name" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#anyURI" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "scientific name id" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/scientificNameID" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "scientific_name_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/scientificNameID" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "scientific name id" + } + }, + { + "@id": "https://w3id.org/traits.build#source_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "For datasets that are compilations, an identifier for the original data source." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": [ + { + "@id": "https://w3id.org/traits.build#traits.build-sources" + }, + { + "@id": "https://w3id.org/traits.build#traits.build-traits" + } + ], + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#observations_from_source" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "source id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "source_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "source id" + } + }, + { + "@id": "https://w3id.org/traits.build#source_original_dataset_citation", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Citations for the original dataset_id in sources, for compilationse. 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The key is typically formatted as `Surname_year`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-methods" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#source_original_dataset_citation" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "source original dataset key" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "https://w3id.org/traits.build#source_id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "source_original_dataset_key" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://w3id.org/traits.build#source_id" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "source original dataset key" + } + }, + { + "@id": "https://w3id.org/traits.build#source_primary_citation", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Citation for the primary source. 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The key is typically formatted as `Surname_year`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-methods" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#source_primary_citation" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "source primary key" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "https://w3id.org/traits.build#dataset_id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "source_primary_key" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://w3id.org/traits.build#dataset_id" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "source primary key" + } + }, + { + "@id": "https://w3id.org/traits.build#source_secondary_citation", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Citations for the secondary source. 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}, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/Taxon" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "taxon" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Characteristic" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Entity" + } + ], + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/Taxon" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "taxon" + } + }, + { + "@id": "https://w3id.org/traits.build#taxon_distribution", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Known distribution of the 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May be a global unique identifier or an identifier specific to the data set. 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When possible, this is the currently accepted (botanical) or valid (zoological) scientific name, but might also be a higher taxonomic level." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": [ + { + "@id": "https://w3id.org/traits.build#traits.build-taxonomic_updates" + }, + { + "@id": "https://w3id.org/traits.build#traits.build-taxa" + }, + { + "@id": "https://w3id.org/traits.build#traits.build-traits" + } + ], + "http://semanticscience.org/resource/SIO_000223": [ + { + "@id": "https://w3id.org/traits.build#taxonomic_status" + }, + { + "@id": "https://w3id.org/traits.build#taxon_rank" + }, + { + "@id": "https://w3id.org/traits.build#taxonomic_dataset" + } + ], + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000641": [ + { + "@id": "https://w3id.org/traits.build#original_name" + }, + { + "@id": "https://w3id.org/traits.build#aligned_name" + } + ], + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#taxon_id" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#observations_of_taxon" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "taxon name" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "taxon_name" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label" + } + ], + "http://www.w3.org/2004/02/skos/core#closeMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/acceptedNameUsage" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "taxon name" + } + }, + { + "@id": "https://w3id.org/traits.build#taxon_rank", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The taxonomic rank of the most specific name in the scientific name." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-taxa" + }, + "http://semanticscience.org/resource/SIO_000224": { + "@id": "https://w3id.org/traits.build#taxon_name" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "This is to clarify cases where information is not given on a species level." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "taxon rank" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://rs.tdwg.org/dwc/terms/taxonRank" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "taxon_rank" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/taxonRank" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "taxon rank" + } + }, + { + "@id": "https://w3id.org/traits.build#taxonomic_dataset", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Name of the taxonomy (tree) that contains this concept. ie. 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Cross referencing between the two dataframes is possible using combinations of the variable `taxon_name`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-database" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "taxa table" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://terminologies.gfbio.org/terms/ETS/Taxon" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "taxa" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://terminologies.gfbio.org/terms/ETS/Taxon" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "taxa table" + } + }, + { + "@id": "https://w3id.org/traits.build#traits.build-taxonomic_updates", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A table of all taxonomic changes implemented in the construction of AusTraits. Changes are determined by comparing the originally submitted taxon name against the taxonomic names listed in the taxonomic reference files, best placed in a subfolder in the `config` folder . Cross referencing with the `traits` table is possible using combinations of the variables `dataset_id` and `taxon_name`." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-database" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "taxonomic updates table" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "taxonomic_updates" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "taxonomic updates table" + } + }, + { + "@id": "https://w3id.org/traits.build#traits.build-traits", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A table containing measurements of traits." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-database" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000754" + }, + "http://www.w3.org/2000/01/rdf-schema#comment": { + "@language": "en", + "@value": "Includes information that must be recorded at the Measurement or Observation level." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "traits table" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://terminologies.gfbio.org/terms/ETS/Traitdata" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "traits" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://terminologies.gfbio.org/terms/ETS/Traitdata" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "traits table" + }, + "http://www.w3.org/2004/02/skos/core#relatedMatch": [ + { + "@id": "http://terminologies.gfbio.org/terms/ETS/Occurrence" + }, + { + "@id": "http://terminologies.gfbio.org/terms/ETS/MeasurementOrFact" + } + ] + }, + { + "@id": "https://w3id.org/traits.build#treatment", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "An experimental manipulation that subjects different individuals or populations to different conditions, which can lead to differences in measured trait values across treatments." + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000756" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "treatment context" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "treatment" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "https://w3id.org/traits.build#traits.build-contexts" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Entity" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "treatment context" + } + }, + { + "@id": "https://w3id.org/traits.build#treatment_context_id", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A unique integer identifier for a treatment, where a treatment is any experimental manipulation to an organism's growing/living conditions. The identifier links to specific information in the context table." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": [ + { + "@id": "https://w3id.org/traits.build#traits.build-contexts" + }, + { + "@id": "https://w3id.org/traits.build#traits.build-traits" + } + ], + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000674": { + "@id": "https://w3id.org/traits.build#measurement_of_treatment_context_property" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#int" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "treatment context id" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "treatment_context_id" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "treatment context id" + } + }, + { + "@id": "https://w3id.org/traits.build#treatment_context_property", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A context characteristic indicating stratified treatments that might affect the trait values measured on an individual or population-level entity." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-contexts" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000673": { + "@id": "https://w3id.org/traits.build#treatment_context_id" + }, + "http://semanticscience.org/resource/SIO_001096": { + "@id": "https://w3id.org/traits.build#context_property" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "treatment context property" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "https://w3id.org/traits.build#contexts_value" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "treatment_context_property" + }, + "http://www.w3.org/2004/02/skos/core#broader": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Characteristic" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://w3id.org/traits.build#contexts_value" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "treatment context property" + } + }, + { + "@id": "https://w3id.org/traits.build#trinomial", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The infraspecific taxon name match for an original name. This column is assigned `na` for taxon name that are at a broader taxonomic_resolution." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-taxa" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://semanticscience.org/resource/SIO_000672": { + "@id": "https://w3id.org/traits.build#taxon" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "trinomial" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "trinomial" + }, + "http://www.w3.org/2004/02/skos/core#broader": [ + { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + { + "@id": "http://www.w3.org/2000/01/rdf-schema#label" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "trinomial" + }, + "http://www.w3.org/2004/02/skos/core#relatedMatch": { + "@id": "http://rs.tdwg.org/dwc/terms/infraspecificEpithet" + } + }, + { + "@id": "https://w3id.org/traits.build#type", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Type of trait, specifying if traits are categorical, numeric, or ordinal." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-definitions" + }, + "http://semanticscience.org/resource/SIO_000224": { + "@id": "https://w3id.org/traits.build#trait" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "type" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://terminologies.gfbio.org/terms/ETS/valueType" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "type" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://terminologies.gfbio.org/terms/ETS/valueType" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "type" + } + }, + { + "@id": "https://w3id.org/traits.build#unit", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "Units of the sampled trait value after aligning with AusTraits standards." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "unit" + }, + "http://www.w3.org/2002/07/owl#sameAs": [ + { + "@id": "http://terminologies.gfbio.org/terms/ETS/traitUnit" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Unit" + } + ], + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "unit" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://terminologies.gfbio.org/terms/ETS/traitUnit" + }, + { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Unit" + } + ], + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "unit" + } + }, + { + "@id": "https://w3id.org/traits.build#units", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "The preferred units for the trait, conforming to the Unified Code for Units of Measure (UCUM). There are often two entries for units, one that is a string and the second which links to a units of measurement axiom." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-definitions" + }, + "http://semanticscience.org/resource/SIO_000224": { + "@id": "https://w3id.org/traits.build#trait" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "units" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://terminologies.gfbio.org/terms/ETS/expectedUnit" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "units" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://terminologies.gfbio.org/terms/ETS/expectedUnit" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "units" + } + }, + { + "@id": "https://w3id.org/traits.build#value_type", + "http://purl.org/dc/terms/created": { + "@type": "xsd:date", + "@value": "01 February 2024" + }, + "http://purl.org/dc/terms/description": { + "@language": "en", + "@value": "A categorical variable describing the statistical nature of the trait value recorded." + }, + "http://rs.tdwg.org/dwc/terms/attributes/organizedInClass": { + "@id": "https://w3id.org/traits.build#traits.build-traits" + }, + "http://semanticscience.org/resource/SIO_000602": { + "@id": "http://semanticscience.org/resource/SIO_000757" + }, + "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@language": "en", + "@value": "value type" + }, + "http://www.w3.org/2002/07/owl#sameAs": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#BaseCharacteristicQualifier" + }, + "http://www.w3.org/2004/02/skos/core#altLabel": { + "@language": "en", + "@value": "value_type" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#BaseCharacteristicQualifier" + }, + "http://www.w3.org/2004/02/skos/core#inScheme": { + "@id": "https://w3id.org/traits.build" + }, + "http://www.w3.org/2004/02/skos/core#prefLabel": { + "@language": "en", + "@value": "value type" + } + } + ] +} diff --git a/ontology/output/ontology/release/1.0.0/traits.build.nq b/ontology/output/ontology/release/1.0.0/traits.build.nq new file mode 100644 index 00000000..d8e65194 --- /dev/null +++ b/ontology/output/ontology/release/1.0.0/traits.build.nq @@ -0,0 +1,1989 @@ + "traits.build database"@en . + "traits.build_database"@en . + . + "traits.build database"@en . + "A database of 13 relational tables build using the {traits.build} R-package for harmonizing trait data."@en . + "01 February 2024"^^ . + . + "traits table"@en . + "traits"@en . + . + . + . + . + . + "traits table"@en . + "A table containing measurements of traits."@en . + "Includes information that must be recorded at the Measurement or Observation level."@en . + "01 February 2024"^^ . + . + . + "contexts table"@en . + "contexts"@en . + . + . + "contexts table"@en . + "A table containing observations of contextual characteristics associated with information in `traits`. Cross referencing between the two dataframes is possible using combinations of the variables `dataset_id`, `link_id`, and `link_vals`."@en . + "01 February 2024"^^ . + . + "locations table"@en . + "locations"@en . + . + . + . + "locations table"@en . + "A table containing observations of location/site characteristics associated with information in `traits`. Cross referencing between the two dataframes is possible using combinations of the variables `dataset_id`, `location_name`."@en . + "Includes information about Location properties."@en . + "01 February 2024"^^ . + . + "methods table"@en . + "methods"@en . + . + . + . + "methods table"@en . + "A table containing details on methods with which data were collected, including time frame and source. Cross referencing with the `traits` table is possible using combinations of the variables `dataset_id`, `trait_name`."@en . + "01 February 2024"^^ . + . + "excluded data table"@en . + "excluded_data"@en . + . + . + "excluded data table"@en . + "A table of data that did not pass quality tests and so were excluded from the master dataset. The structure is identical to that presented in the `traits` table, only with an extra column called `error` indicating why the record was excluded. Common reasons are missing_unit_conversions, missing_value, and unsupported_trait_value."@en . + "01 February 2024"^^ . + . + "taxonomic updates table"@en . + "taxonomic_updates"@en . + . + . + "taxonomic updates table"@en . + "A table of all taxonomic changes implemented in the construction of AusTraits. Changes are determined by comparing the originally submitted taxon name against the taxonomic names listed in the taxonomic reference files, best placed in a subfolder in the `config` folder . Cross referencing with the `traits` table is possible using combinations of the variables `dataset_id` and `taxon_name`."@en . + "01 February 2024"^^ . + . + "taxa table"@en . + "taxa"@en . + . + . + . + "taxa table"@en . + "A table containing details on taxa associated with information in `traits`. Whenever possible, this information is sourced from curated taxon lists that include identifiers for each taxon. The information compiled in this table is released under a CC-BY3 license. Cross referencing between the two dataframes is possible using combinations of the variable `taxon_name`."@en . + "01 February 2024"^^ . + . + . + "contributors table"@en . + "contributors"@en . + . + . + "contributors table"@en . + "A table of people contributing to each study."@en . + "01 February 2024"^^ . + . + "sources table"@en . + "sources"@en . + . + . + "sources table"@en . + "A list containing citation details for all database sources."@en . + "01 February 2024"^^ . + . + "definitions table"@en . + "definitions"@en . + . + . + . + "definitions table"@en . + "A list containing trait concept descriptions used to build the database."@en . + "01 February 2024"^^ . + . + . + "schema"@en . + "schema"@en . + . + . + "schema"@en . + "A copy of the schema for all tables and terms. Information included here was used to process data and generate any documentation for the study."@en . + "01 February 2024"^^ . + . + "metadata table"@en . + "metadata"@en . + . + . + . + "metadata table"@en . + "A list containing database metadata."@en . + "01 February 2024"^^ . + . + "build info"@en . + "build_info"@en . + . + . + "build info"@en . + "A description of the computing environment used to create this version of the dataset, including version number, git commit and R session_info."@en . + "01 February 2024"^^ . + . + "dataset"@en . + "dataset"@en . + . + . + "dataset"@en . + . + "13 relational tables and lists containing all data about a dataset."@en . + "01 February 2024"^^ . + . + . + "observation"@en . + "observation"@en . + . + . + "observation"@en . + . + "An Observation is a collection of measurements made at a single point in time. In traits.build it is the subset of rows within the traits data that are made on the same entity and share the same observation_id."@en . + "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single "observation event". Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism."@en . + "01 February 2024"^^ . + . + . + "observations from dataset"@en . + "observations_from_dataset"@en . + . + . + . + . + . + . + . + . + "observations from dataset"@en . + . + . + "Observation collection encompassing all observations that comprise a dataset."@en . + "01 February 2024"^^ . + . + "observations from source"@en . + "observations_from_source"@en . + . + . + . + . + . + . + . + . + "observations from source"@en . + . + . + "Observation collection encompassing all observations for a single published or unpublished source."@en . + "01 February 2024"^^ . + . + "observations of taxon"@en . + "observations_of_taxon"@en . + . + . + . + "observations of taxon"@en . + . + . + "Observation collection encompassing all observations on a single taxon within a single dataset."@en . + "An observation collection is a container for a set of observations."@en . + "01 February 2024"^^ . + . + "observations at location"@en . + "observations_at_location"@en . + . + . + . + . + "observations at location"@en . + . + . + . + . + "Observation collection of location properties and organismal traits at a single location."@en . + "01 February 2024"^^ . + . + "observation of location"@en . + "observation_of_location"@en . + . + . + . + "observation of location"@en . + . + . + "Observation of location properties at a single location."@en . + "01 February 2024"^^ . + . + "observations of population"@en . + "observations_of_population"@en . + . + . + . + "observations of population"@en . + . + . + "Observation collection encompassing all observations on a single population."@en . + "01 February 2024"^^ . + . + "observations of individual"@en . + "observations_of_individual"@en . + . + . + . + "observations of individual"@en . + . + . + "Observation collection encompassing all observations on a single individual."@en . + "01 February 2024"^^ . + . + "observation of a treatment context"@en . + "observation_of_treatment_context"@en . + . + . + . + "observation of a treatment context"@en . + . + . + . + "Observation where entity is a context indicating experimental manipulations that might affect the trait values measured on an individual, population or species-level entities."@en . + "Examples include growing temperature, growing CO2 concentrations, and nutrient amendments."@en . + "01 February 2024"^^ . + . + "observation of plot context"@en . + "observation_of_plot_context"@en . + . + . + . + "observation of plot context"@en . + . + . + . + "Observation where entity is a category of context indicating variation across plots at a single location might affect the trait values measured on individual or population-level entities."@en . + "01 February 2024"^^ . + . + "observation of entity context"@en . + "observation_of_entity_context"@en . + . + . + . + "observation of entity context"@en . + . + . + . + . + . + "Observation where entity is a category of context indicating repeat observations have been made on an individual, population or species-level entity across time which might affect the entity's measured trait values."@en . + "01 February 2024"^^ . + . + "observation of temporal context"@en . + "observation_of_temporal_context"@en . + . + . + . + "observation of temporal context"@en . + . + . + . + "Observation where entity is a category of context indicating repeat observations have been made on a plot, which might affect the trait values measured on individual or population-level entities."@en . + "Examples of temporal contexts are `sampling season`, `sampling time of day`, and sequential `observation numbers` without any linked categorical description."@en . + "01 February 2024"^^ . + . + "measurement"@en . + "measurement"@en . + . + . + "measurement"@en . + "A measurement is an assertion that a characteristic of an entity had a particular value with respect to an observation event."@en . + "01 February 2024"^^ . + . + . + "trait measurement"@en . + "trait_measurement"@en . + . + . + . + . + . + . + . + . + . + "trait measurement"@en . + . + "A measurement made on a trait."@en . + "01 February 2024"^^ . + . + "measurement of location property"@en . + "measurement_of_location_property"@en . + . + . + . + . + "measurement of location property"@en . + . + "A measurement made on a location property."@en . + "01 February 2024"^^ . + . + "measurement of treatment context property"@en . + "measurement_of_treatment_context_property"@en . + . + . + . + "measurement of treatment context property"@en . + . + . + "A measurement made on a treatment context property."@en . + "01 February 2024"^^ . + . + "measurement of plot context property"@en . + "measurement_of_plot_context_property"@en . + . + . + . + "measurement of plot context property"@en . + . + "A measurement made on a plot context property."@en . + "01 February 2024"^^ . + . + "measurement of entity context property"@en . + "measurement_of_entity_context_property"@en . + . + . + . + "measurement of entity context property"@en . + . + "A measurement made on an entity context property."@en . + "01 February 2024"^^ . + . + "measurement of temporal context property"@en . + "measurement_of_temporal_context_property"@en . + . + . + . + "measurement of temporal context property"@en . + . + "A measurement made on a temporal context property."@en . + "01 February 2024"^^ . + . + "entity"@en . + "entity"@en . + . + . + "entity"@en . + "An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity."@en . + "01 February 2024"^^ . + . + . + "individual"@en . + "individual"@en . + . + . + . + . + "individual"@en . + "An individual living organism."@en . + "01 February 2024"^^ . + . + . + "population"@en . + "population"@en . + . + . + . + . + "population"@en . + "A collection of organisms, all of the same species, that live in the same place."@en . + "01 February 2024"^^ . + . + . + "taxon"@en . + "taxon"@en . + . + . + "taxon"@en . + "A circumscribed set of organisms."@en . + "01 February 2024"^^ . + . + "location"@en . + "location"@en . + . + . + . + "location"@en . + . + "A spatial region or named place."@en . + "01 February 2024"^^ . + . + . + "context"@en . + "context"@en . + . + . + "context"@en . + "The situation within which a trait measurement is made, which can help explain the measured trait value."@en . + "01 February 2024"^^ . + . + "plot context"@en . + "plot"@en . + . + . + . + "plot context"@en . + "A subdivision of a location, designated because some properties differ across plots within a location, which might cause differences in measured trait values between plots."@en . + "01 February 2024"^^ . + . + "treatment context"@en . + "treatment"@en . + . + . + . + "treatment context"@en . + "An experimental manipulation that subjects different individuals or populations to different conditions, which can lead to differences in measured trait values across treatments."@en . + "01 February 2024"^^ . + . + "temporal context"@en . + "temporal_context"@en . + . + . + . + "temporal context"@en . + "A situation or process that varies across time and might cause the measured trait values of individuals or populations to change across time."@en . + "01 February 2024"^^ . + . + "method context"@en . + "method_context"@en . + . + . + . + "method context"@en . + "A compment of a trait measurement protocol that is changed between individual trait measurements and might cause the measured trait values of individuals or populations to change."@en . + "01 February 2024"^^ . + . + "dataset id"@en . + "dataset_id"@en . + . + . + . + . + . + . + . + . + . + "dataset id"@en . + . + "Primary identifier for each study contributed to AusTraits, most often these are scientific papers, books, or online resources. By default this should be the name of the first author and year of publication, e.g. `Falster_2005`."@en . + "01 February 2024"^^ . + . + "taxon name"@en . + "taxon_name"@en . + . + . + . + . + . + . + . + "taxon name"@en . + . + . + . + . + . + . + . + "Scientific name of the taxon on which traits were sampled, without authorship. When possible, this is the currently accepted (botanical) or valid (zoological) scientific name, but might also be a higher taxonomic level."@en . + . + "01 February 2024"^^ . + . + "observation id"@en . + "observation_id"@en . + . + . + . + "observation id"@en . + . + "A unique integral identifier for the observation, where an observation is all measurements made on an individual at a single point in time. It is important for joining traits coming from the same `observation_id`. Within each dataset, observation_id's are unique combinations of `taxon_name`, `population_id`, `individual_id`, and `temporal_context_id`."@en . + "01 February 2024"^^ . + . + "trait name"@en . + "trait_name"@en . + . + . + . + . + . + . + "trait name"@en . + "Name of the trait sampled. Allowable values specified in the table `definitions`."@en . + "01 February 2024"^^ . + . + . + . + "value"@en . + "value"@en . + . + . + . + . + . + "value"@en . + "The measured value of a trait."@en . + "01 February 2024"^^ . + . + . + "unit"@en . + "unit"@en . + . + . + . + . + "unit"@en . + "Units of the sampled trait value after aligning with AusTraits standards."@en . + "01 February 2024"^^ . + . + . + . + "entity type"@en . + "entity_type"@en . + . + . + "entity type"@en . + "A categorical variable specifying the entity corresponding to the trait values recorded."@en . + . + "01 February 2024"^^ . + . + "value type"@en . + "value_type"@en . + . + . + . + "value type"@en . + "A categorical variable describing the statistical nature of the trait value recorded."@en . + . + "01 February 2024"^^ . + . + . + "basis of value"@en . + "basis_of_value"@en . + . + . + . + "basis of value"@en . + "A categorical variable describing how the trait value was obtained."@en . + . + "01 February 2024"^^ . + . + . + "replicates"@en . + "replicates"@en . + . + . + . + "replicates"@en . + "Number of replicate measurements that comprise a recorded trait measurement. A numeric value (or range) is ideal and appropriate if the value type is a `mean`, `median`, `min` or  `max`. For these value types, if replication is unknown the entry should be `unknown`. If the value type is `raw_value` the replicate value should be 1. If the trait is categorical or the value indicates a measurement for an entire species (or other taxon) replicate value should be `.na`."@en . + . + "01 February 2024"^^ . + . + . + "basis of record"@en . + "basis_of_record"@en . + . + . + . + "basis of record"@en . + "A categorical variable specifying from which kind of specimen traits were recorded."@en . + . + "01 February 2024"^^ . + . + "life stage"@en . + "life_stage"@en . + . + . + . + . + . + "life stage"@en . + . + "A field to indicate the life stage or age class of the entity measured. Standard values are `adult`, `sapling`, `seedling` and `juvenile`."@en . + . + "01 February 2024"^^ . + . + . + "population id"@en . + "population_id"@en . + . + . + . + "population id"@en . + . + "A unique integer identifier for a population, where a population is defined as individuals growing in the same location (location_id /location_name) and plot (plot_context_id, a context category) and being subjected to the same treatment (treatment_context_id, a context category)."@en . + . + "01 February 2024"^^ . + . + "individual id"@en . + "individual_id"@en . + . + . + . + "individual id"@en . + . + "A unique integer identifier for an individual, with individuals numbered sequentially within each dataset by taxon by population grouping. Most often each row of data represents an individual, but in some datasets trait data collected on a single individual is presented across multiple rows of data, such as if the same trait is measured using different methods or the same individual is measured repeatedly across time."@en . + . + "01 February 2024"^^ . + . + "repeat measurements id"@en . + "repeat_measurements_id"@en . + . + . + . + "repeat measurements id"@en . + . + . + "A unique integer identifier for repeat measurements of a trait that comprise a single observation, such as a response curve."@en . + . + "01 February 2024"^^ . + . + "source id"@en . + "source_id"@en . + . + . + . + . + "source id"@en . + . + "For datasets that are compilations, an identifier for the original data source."@en . + . + "01 February 2024"^^ . + . + "location id"@en . + "location_id"@en . + . + . + . + . + "location id"@en . + . + "A unique integer identifier for a location, with locations numbered sequentially within a dataset. The identifier links to specific information in the location table."@en . + . + "01 February 2024"^^ . + . + "treatment context id"@en . + "treatment_context_id"@en . + . + . + . + . + "treatment context id"@en . + . + "A unique integer identifier for a treatment, where a treatment is any experimental manipulation to an organism's growing/living conditions. The identifier links to specific information in the context table."@en . + . + "01 February 2024"^^ . + . + "plot context id"@en . + "plot_context_id"@en . + . + . + . + . + "plot context id"@en . + . + "A unique integer identifier for a plot, where a plot is a distinct collection of organisms within a single geographic location, such as plants growing on different aspects or blocks in an experiment. The identifier links to specific information in the context table."@en . + . + "01 February 2024"^^ . + . + "entity context id"@en . + "entity_context_id"@en . + . + . + . + . + "entity context id"@en . + . + "A unique integer identifier indicating specific contextual properties of an individual, possibly including the individual's sex or caste (for social insects)."@en . + . + "01 February 2024"^^ . + . + "temporal context id"@en . + "temporal_context_id"@en . + . + . + . + . + "temporal context id"@en . + . + "A unique integer identifier assigned where repeat observations are made on the same individual (or population, or taxon) across time. The identifier links to specific information in the context table."@en . + . + "01 February 2024"^^ . + . + "method context id"@en . + "method_context_id"@en . + . + . + . + . + "method context id"@en . + "A unique integer identifier indicating a trait is measured multiple times on the same entity, with different methods used for each entry. This field is only used if a single trait is measured using multiple methods within the same dataset. The identifier links to specific information in the context table."@en . + . + "01 February 2024"^^ . + . + "collection date"@en . + "collection_date"@en . + . + . + . + . + . + "collection date"@en . + . + "Date sample was taken, in the format `yyyy-mm-dd`, `yyyy-mm` or `yyyy`, depending on the resoluton specified. Alternatively an overall range for the study can be indicating, with the starting and ending sample date sepatated by a `/`, as in 2010-10/2011-03"@en . + . + "01 February 2024"^^ . + . + . + "measurement remarks"@en . + "measurement_remarks"@en . + . + . + . + "measurement remarks"@en . + "Brief comments or notes accompanying the trait measurement."@en . + . + "01 February 2024"^^ . + . + "method id"@en . + "method_id"@en . + . + . + . + . + "method id"@en . + . + . + "A unique integer identifier to distinguish between multiple sets of methods used to measure a single trait within the same dataset. The identifier links to specific information in the methods table."@en . + . + "01 February 2024"^^ . + . + "original taxon name"@en . + "original_name"@en . + . + . + . + . + . + "original taxon name"@en . + "Name given to taxon in the original data supplied by the authors."@en . + . + "01 February 2024"^^ . + . + "location name"@en . + "location_name"@en . + . + . + . + . + "location name"@en . + "The location name used by the data contributor or a generic location name designated by AusTraits when one is not provided."@en . + . + "01 February 2024"^^ . + . + "location property"@en . + "location_property"@en . + . + . + . + "location property"@en . + . + . + "The location characteristic being recorded. The name should include units of measurement, e.g. `MAT (C)`. Ideally we have at least the following variables for each location, `longitude (deg)`, `latitude (deg)`, `description`."@en . + . + "01 February 2024"^^ . + . + "location property value"@en . + "value"@en . + . + . + . + . + "location property value"@en . + "The measured value of a location property."@en . + . + "01 February 2024"^^ . + . + "latitude (deg)"@en . + "latitude"@en . + . + . + . + . + . + "latitude (deg)"@en . + . + . + "The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive."@en . + . + "01 February 2024"^^ . + . + . + "longitude (deg)"@en . + "longitude"@en . + . + . + . + . + . + "longitude (deg)"@en . + . + . + "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive."@en . + . + "01 February 2024"^^ . + . + . + "elevation (m)"@en . + "elevation"@en . + . + . + . + . + . + "elevation (m)"@en . + . + . + "The elevation above mean sea level in meters."@en . + . + "01 February 2024"^^ . + . + . + "context property"@en . + "context_property"@en . + . + . + . + . + "context property"@en . + . + . + "The contextual characteristic being recorded. If applicable, name should include units of measurement, e.g. `CO2 concentration (ppm)`."@en . + . + "01 February 2024"^^ . + . + . + "treatment context property"@en . + "treatment_context_property"@en . + . + . + . + . + "treatment context property"@en . + . + . + "A context characteristic indicating stratified treatments that might affect the trait values measured on an individual or population-level entity."@en . + . + "01 February 2024"^^ . + . + . + "plot context property"@en . + "plot_context_property"@en . + . + . + . + . + "plot context property"@en . + . + . + "A context characteristic indicating stratified variation within a location that might affect the trait values measured on an individual or population-level entity."@en . + . + "01 February 2024"^^ . + . + . + "entity context property"@en . + "entity_context_property"@en . + . + . + . + . + "entity context property"@en . + . + . + "A context characteristic indicating stratified variation across individuals or populations might affect the trait values measured."@en . + . + "01 February 2024"^^ . + . + . + "temporal context property"@en . + "temporal_context_property"@en . + . + . + . + . + "temporal context property"@en . + . + . + "A context characteristic indicating stratified variation across time might affect the trait values measured."@en . + . + "01 February 2024"^^ . + . + . + "method context property"@en . + "method_context_property"@en . + . + . + . + . + "method context property"@en . + . + . + "A context characteristic indicating stratified variation in the protocol used to measure traits might affect the trait values measured."@en . + . + "01 February 2024"^^ . + . + . + "context property category"@en . + "category"@en . + . + . + . + "context property category"@en . + . + "The category of context property, with options being `plot`, `treatment`, `individual_context`, `temporal` and `method`."@en . + . + "01 February 2024"^^ . + . + "context property value"@en . + "value"@en . + . + . + . + . + . + "context property value"@en . + "The measured value of a context property."@en . + . + "01 February 2024"^^ . + . + "context property value description"@en . + "description"@en . + . + . + . + "context property value description"@en . + . + "Description of a specific context property value."@en . + . + "01 February 2024"^^ . + . + "context propety link id"@en . + "link_id"@en . + . + . + . + "context propety link id"@en . + . + . + . + . + . + "Variable indicating which identifier column in the traits table contains the specified `link_vals`."@en . + . + "01 February 2024"^^ . + . + "context propety link vals"@en . + "link_vals"@en . + . + . + . + "context propety link vals"@en . + . + . + . + . + . + "Unique integer identifiers that link between identifier columns in the `traits` table and the contextual properties/values in the `contexts` table."@en . + . + "01 February 2024"^^ . + . + "methods"@en . + "methods"@en . + . + . + . + . + "methods"@en . + "A textual description of the methods used to collect the trait data. Whenever available, methods are taken near-verbatim from the referenced source. Methods can include descriptions such as 'measured on botanical collections', 'data from the literature', or a detailed description of the field or lab methods used to collect the data."@en . + . + "01 February 2024"^^ . + . + "dataset description"@en . + "description"@en . + . + . + . + . + "dataset description"@en . + . + "A 1-2 sentence description of the purpose of the study."@en . + . + "01 February 2024"^^ . + . + . + "dataset sampling strategy"@en . + "sampling_strategy"@en . + . + . + . + "dataset sampling strategy"@en . + . + "When available, this information is lifted verbatim from a published manuscript. For preserved specimens, this field ideally indicates which records were 'sampled' to measure a specific trait."@en . + . + "01 February 2024"^^ . + . + . + "source primary key"@en . + "source_primary_key"@en . + . + . + . + . + "source primary key"@en . + . + "Citation key for the primary source in `sources`. The key is typically formatted as `Surname_year`."@en . + . + "01 February 2024"^^ . + . + . + "source primary citation"@en . + "source_primary_citation"@en . + . + . + . + "source primary citation"@en . + . + . + "Citation for the primary source. This detail is generated from the primary source in the metadata."@en . + . + "01 February 2024"^^ . + . + "source secondary key"@en . + "source_secondary_key"@en . + . + . + . + "source secondary key"@en . + . + "Citation key for the secondary source in `sources`. The key is typically formatted as `Surname_year`."@en . + . + "01 February 2024"^^ . + . + "source secondary citation"@en . + "source_secondary_citation"@en . + . + . + . + "source secondary citation"@en . + . + . + "Citations for the secondary source. This detail is generated from the secondary source in the metadata."@en . + . + "01 February 2024"^^ . + . + "source original dataset key"@en . + "source_original_dataset_key"@en . + . + . + . + . + "source original dataset key"@en . + . + "Citation key for the original dataset_id in sources, for compilations. The key is typically formatted as `Surname_year`."@en . + . + "01 February 2024"^^ . + . + . + "source original dataset citation"@en . + "source_original_dataset_citation"@en . + . + . + . + "source original dataset citation"@en . + . + . + "Citations for the original dataset_id in sources, for compilationse. This detail is generated from the original source in the metadata."@en . + . + "01 February 2024"^^ . + . + "contributor"@en . + "contributor"@en . + . + . + . + . + "contributor"@en . + . + "A person contributing to a dataset."@en . + . + "01 February 2024"^^ . + . + . + "assistants"@en . + "assistants"@en . + . + . + . + . + "assistants"@en . + . + "People who played a more minor role in data collection for the study."@en . + . + "01 February 2024"^^ . + . + . + "dataset curators"@en . + "dataset_curators"@en . + . + . + . + . + "dataset curators"@en . + . + "Database team member(s) who contacted the data collectors and added the study to the database repository."@en . + . + "01 February 2024"^^ . + . + . + "data collectors"@en . + "data_collectors"@en . + . + . + . + . + . + "data collectors"@en . + . + . + . + . + . + . + "Person contributing to a dataset as a data collector."@en . + . + "01 February 2024"^^ . + . + . + "last name"@en . + "last_name"@en . + . + . + . + . + "last name"@en . + . + "Last name of the data collector."@en . + . + "01 February 2024"^^ . + . + . + "given name"@en . + "given_name"@en . + . + . + . + . + "given name"@en . + . + "Given names of the data collector."@en . + . + "01 February 2024"^^ . + . + . + "ORCID identifier"@en . + "ORCID"@en . + . + . + . + . + "ORCID identifier"@en . + . + "ORCID (Open Researcher and Contributor ID) for the data collector, if available."@en . + . + "01 February 2024"^^ . + . + . + "affiliation"@en . + "affiliation"@en . + . + . + . + "affiliation"@en . + . + "Affiliation of data collector."@en . + . + "01 February 2024"^^ . + . + . + "additional role"@en . + "additional_role"@en . + . + . + . + "additional role"@en . + . + "Any additional roles the data collector had in the study, a field most frequently used to identify which data contributor is the contact person for the dataset."@en . + . + "01 February 2024"^^ . + . + . + "taxonomic dataset"@en . + "taxonomic_dataset"@en . + . + . + . + "taxonomic dataset"@en . + . + "Name of the taxonomy (tree) that contains this concept. ie. APC, AusMoss etc."@en . + . + "01 February 2024"^^ . + . + . + "taxon rank"@en . + "taxon_rank"@en . + . + . + . + "taxon rank"@en . + . + "The taxonomic rank of the most specific name in the scientific name."@en . + "This is to clarify cases where information is not given on a species level."@en . + . + "01 February 2024"^^ . + . + . + "trinomial"@en . + "trinomial"@en . + . + . + . + . + . + "trinomial"@en . + . + "The infraspecific taxon name match for an original name. This column is assigned `na` for taxon name that are at a broader taxonomic_resolution."@en . + . + "01 February 2024"^^ . + . + "binomial"@en . + "binomial"@en . + . + . + . + . + . + "binomial"@en . + . + "The species-level taxon name match for an original name. This column is assigned `na` for taxon name that are at a broader taxonomic_resolution."@en . + . + "01 February 2024"^^ . + . + "genus"@en . + "genus"@en . + . + . + . + . + . + "genus"@en . + . + "Genus of the taxon without authorship."@en . + . + "01 February 2024"^^ . + . + . + "family"@en . + "family"@en . + . + . + . + . + . + "family"@en . + . + "Family of the taxon."@en . + . + "01 February 2024"^^ . + . + . + "taxon distribution"@en . + "taxon_distribution"@en . + . + . + "taxon distribution"@en . + . + "Known distribution of the taxon, by Australian state."@en . + . + "01 February 2024"^^ . + . + "establishment means"@en . + "establishment_means"@en . + . + . + . + "establishment means"@en . + . + "Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans."@en . + . + "01 February 2024"^^ . + . + . + "taxonomic status"@en . + "taxonomic_status"@en . + . + . + . + "taxonomic status"@en . + . + "The status of the use of the scientificName as a label for the taxon in regard to the 'accepted (or valid) taxonomy'. The assigned taxonomic status must be linked to a specific taxonomic reference that defines the concept."@en . + . + "01 February 2024"^^ . + . + . + "scientific name"@en . + "scientific_name"@en . + . + . + . + "scientific name"@en . + . + . + "The full scientific name, with authorship and date information if known."@en . + . + "01 February 2024"^^ . + . + . + "taxon id"@en . + "taxon_id"@en . + . + . + . + . + "taxon id"@en . + . + "An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset."@en . + . + "01 February 2024"^^ . + . + . + "scientific name id"@en . + "scientific_name_id"@en . + . + . + . + . + "scientific name id"@en . + . + "An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset."@en . + . + "01 February 2024"^^ . + . + . + "taxon"@en . + "taxon"@en . + . + . + . + . + "taxon"@en . + . + . + . + . + . + . + . + . + . + . + . + "A group of organisms assumed to form a homogeneous unit with regard to associated trait measurements."@en . + . + "01 February 2024"^^ . + . + . + "aligned name"@en . + "aligned_name"@en . + . + . + . + . + "aligned name"@en . + . + . + . + "The taxon name without authorship after implementing automated syntax standardisation and spelling changes as well as manually encoded syntax alignments for this taxon in the metadata file for the corresponding `dataset_id`. This name has not yet been matched to the currently accepted (botanical) or valid (zoological) taxon name in cases where there are taxonomic synonyms, isonyms, orthographic variants, etc."@en . + . + "01 February 2024"^^ . + . + "taxonomic resolution"@en . + "taxonomic_resolution"@en . + . + . + . + "taxonomic resolution"@en . + . + "The rank of the most specific taxon name (or scientific name) to which a submitted orignal name resolves."@en . + . + "01 February 2024"^^ . + . + "trait concept"@en . + "trait"@en . + . + . + . + "trait concept"@en . + . + . + . + . + . + . + . + . + "A collection of trait values pertaining to a distinct characteristic of a specific part of an organism (cell, tissue, organ, or whole organism)."@en . + . + "01 February 2024"^^ . + . + . + "trait identifier"@en . + "trait_concept_URI"@en . + . + . + . + . + "trait identifier"@en . + . + "Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits."@en . + . + "01 February 2024"^^ . + . + . + . + "label"@en . + "label"@en . + . + . + . + . + . + "label"@en . + . + "A concise English label for the trait."@en . + . + "01 February 2024"^^ . + . + . + . + . + "description"@en . + "description"@en . + . + . + . + . + "description"@en . + . + "A short description, generally ranging from 1-3 sentences that clearly indicates the trait’s scope."@en . + . + "01 February 2024"^^ . + . + . + . + "comments"@en . + "comments"@en . + . + . + . + . + "comments"@en . + . + "Additional notes about the scope of the trait or acceptable methods."@en . + . + "01 February 2024"^^ . + . + . + . + "max allowed values"@en . + "allowed_values_max"@en . + . + . + . + "max allowed values"@en . + . + "An upper boundary for accepted numerical values."@en . + . + "01 February 2024"^^ . + . + . + "min allowed values"@en . + "allowed_values_min"@en . + . + . + . + "min allowed values"@en . + . + "A lower boundary for accepted numerical values."@en . + . + "01 February 2024"^^ . + . + . + "units"@en . + "units"@en . + . + . + . + "units"@en . + . + "The preferred units for the trait, conforming to the Unified Code for Units of Measure (UCUM). There are often two entries for units, one that is a string and the second which links to a units of measurement axiom."@en . + . + "01 February 2024"^^ . + . + . + "allowed categorical values"@en . + "allowed_values_levels"@en . + . + . + . + . + "allowed categorical values"@en . + . + "Allowed trait values for a categorical trait, including a brief description of the value."@en . + . + "01 February 2024"^^ . + . + . + . + "type"@en . + "type"@en . + . + . + . + "type"@en . + . + "Type of trait, specifying if traits are categorical, numeric, or ordinal."@en . + . + "01 February 2024"^^ . + . + . + "Identifier"@en . + "Provides an identifying sequence of characters to refer to an entity within a context. An Identifier can be unique within a local context or a global context."@en . + . + "Characteristic"@en . + "A characteristic represents a property of an entity that can be measured (e.g., height, length, or color). A characteristic of an entity is observed through a measurement, which further asserts a value of the characteristic for the entity. A characteristic type (e.g., 'height') can be associated with many different entities, whereas an individual characteristic (a particular occurrence of the 'height' characteristic) is associated to exactly one entity."@en . + . + "Standard"@en . + "A standard defines a reference for comparing or naming entities via a measurement. A standard can be defined intentionally (e.g., as in the case of units) or extensionally (by listing the values of the standard, e.g., for color this might be red, blue, yellow, etc)."@en . + . + "Entity"@en . + "An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity."@en . + . + "Observation"@en . + "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single 'observation event'. Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism."@en . + . + "Observation Collection"@en . + "An observation collection is a container for a set of observations."@en . + . + "Protocol"@en . + "A protocol is a procedure for generating or processing data."@en . + . + "Measurement"@en . + "A measurement is an assertion that a characteristic of an entity had a particular value with respect to an observation event. A measurement is comprised of a characteristic, a value, a measurement standard, and a protocol. Measurements can also have precision as well as a description of the methods used. Measurements can encapsulate characteristics that were recorded, but not necessarily measured in a physical sense. For example, the name of a location and a taxon can be captured through measurements."@en . + . + "Unit"@en . + "A unit is a standard quantification for physical measurements. A unit is either a base unit, a composite unit, or a derived unit."@en . + . + "Base Characteristic Qualifier"@en . + "A base qualifier denotes a simple, atomic qualifier such as average, minimum, and maximum."@en . + . + "Measurement Type"@en . + "A MeasurementType describes the type of a Measurement in which the Measurement would follow the associated Protocol to record the value of the associated Characteristic of the associated Entity using the associated Standard. Any of these associated properties may be omitted, in which case the MeasurementType is only constrained by the provided associations. A MeasurementType is a hypothetical construct, in that it is not associated with a particular instance of a Measurement."@en . + . + "Measured Value"@en . + "A measurement value is a quantitative or qualitative result of a measurement. Measurement values can contain a coded representation of the result, e.g., as a number or string."@en . + . + "measurement for"@en . + "The measurementFor property gives the observation (observed entitiy) that a measurement is associated with. Each measurement is for exactly one observation."@en . + . + "has measurement"@en . + "The hasMeasurement property gives the measurements of the observed entity."@en . + . + "characteristic for"@en . + "The characteristicFor property gives the entity of the characteristic."@en . + . + "of entity"@en . + "The ofEntity property gives the observed entity of an observation."@en . + . + "has value"@en . + "The hasValue property gives the value of the measurement."@en . + . + "has context"@en . + "The hasContext property asserts that one observation serves as the context for another observation. In a hasContext property the domain is the observation being contextualized and the range is the context. Context defines a semantic relationship between two entities that is a fundamental aspect of the observations, but not necessarily of the entities themselves. For example, most measurements are accomplished in a spatio-temporal framework that might be valuable context. The assertions made by contextual observations are assumed of the contextualized observations. Context is a transitive relationship."@en . + . + "Taxon"@en . + "A group of organisms (sensu http://purl.obolibrary.org/obo/OBI_0100026) considered by taxonomists to form a homogeneous unit."@en . + . + "taxonID"@en . + "An identifier for the set of dwc:Taxon information. May be a global unique identifier or an identifier specific to the data set."@en . + . + "establishmentMeans"@en . + "Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans."@en . + . + "family"@en . + "The full scientific name of the family in which the taxon is classified."@en . + . + "genus"@en . + "The full scientific name of the genus in which the dwc:Taxon is classified."@en . + . + "infraspecificEpithet"@en . + "The name of the lowest or terminal infraspecific epithet of the dwc:scientificName, excluding any rank designation."@en . + . + "specificEpithet"@en . + "The name of the first or species epithet of the dwc:scientificName."@en . + . + "taxonRank"@en . + "The taxonomic rank of the most specific name in the dwc:scientificName."@en . + . + "nomenclaturalCode"@en . + "The nomenclatural code (or codes in the case of an ambiregnal name) under which the dwc:scientificName is constructed."@en . + . + "taxonomicStatus"@en . + "The status of the use of the dwc:scientificName as a label for a taxon. Requires taxonomic opinion to define the scope of a dwc:Taxon. Rules of priority then are used to define the taxonomic status of the nomenclature contained in that scope, combined with the experts opinion. It must be linked to a specific taxonomic reference that defines the concept."@en . + . + "scientificName"@en . + "The full scientific name, with authorship and date information if known. When forming part of a dwc:Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the dwc:identificationQualifier term."@en . + . + "taxonID"@en . + "An identifier for the set of dwc:Taxon information. May be a global unique identifier or an identifier specific to the data set."@en . + . + "scientificNameID"@en . + "An identifier for the nomenclatural (not taxonomic) details of a scientific name."@en . + . + "Taxon"@en . + "A group of organisms (sensu http://purl.obolibrary.org/obo/OBI_0100026) considered by taxonomists to form a homogeneous unit."@en . + . + "identificationQualifier"@en . + "A brief phrase or a standard term ('cf.', 'aff.') to express the determiner's doubts about the dwc:Identification."@en . + . + "samplingProtocol"@en . + "The names of, references to, or descriptions of the methods or protocols used during a dwc:Event."@en . + "Recommended best practice is describe a dwc:Event with no more than one sampling protocol. In the case of a summary Event with multiple protocols, in which a specific protocol can not be attributed to specific dwc:Occurrences, the recommended best practice is to separate the values in a list with space vertical bar space ( | ). This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en . + . + "datasetID"@en . + "An identifier for the set of data. May be a global unique identifier or an identifier specific to a collection or institution."@en . + . + "decimalLatitude"@en . + "The geographic latitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive."@en . + . + "decimalLongitude"@en . + "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive."@en . + . + "verbatimElevation"@en . + "The original description of the elevation (altitude, usually above sea level) of the Location."@en . + . + "measurementValue"@en . + "The value of the measurement, fact, characteristic, or assertion."@en . + "This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en . + "acceptedNameUsage"@en . + "The full name, with authorship and date information if known, of the currently valid (zoological) or accepted (botanical) dwc:Taxon."@en . + "The full scientific name, with authorship and date information if known, of the accepted (botanical) or valid (zoological) name in cases where the provided dwc:scientificName is considered by the reference indicated in the dwc:accordingTo property, or of the content provider, to be a synonym or misapplied name. When applied to a dwc:Organism or dwc:Occurrence, this term should be used in cases where a content provider regards the provided dwc:scientificName to be inconsistent with the taxonomic perspective of the content provider. For example, there are many discrepancies within specimen collections and observation datasets between the recorded name (e.g., the most recent identification from an expert who examined a specimen, or a field identification for an observed dwc:Organism), and the name asserted by the content provider to be taxonomically accepted."@en . + "lifeStage"@en . + "The age class or life stage of the dwc:Organism(s) at the time the dwc:Occurrence was recorded."@en . + "Recommended best practice is to use a controlled vocabulary. This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en . + "basisOfRecord"@en . + "The specific nature of the data record."@en . + "Recommended best practice is to use a controlled vocabulary such as the set of local names of the identifiers for classes in Darwin Core."@en . + "organizedInClass"@en . + "Used to organize properties within classes for easier human understanding."@en . + . + "scope note"@en . + "A note that helps to clarify the meaning and/or the use of a concept."@en . + . + "is in scheme"@en . + "Relates a resource (for example a concept) to a concept scheme in which it is included."@en . + . + "has broader"@en . + "Relates a concept to a concept that is more general in meaning."@en . + . + "has narrower"@en . + "Relates a concept to a concept that is more specific in meaning."@en . + . + "preferred label"@en . + "The preferred lexical label for a resource, in a given language."@en . + . + "alternative label"@en . + "An alternative lexical label for a resource."@en . + . + "has exact match"@en . + "skos:exactMatch is used to link two concepts, indicating a high degree of confidence that the concepts can be used interchangeably across a wide range of information retrieval applications."@en . + . + "has close match"@en . + "skos:closeMatch is used to link two concepts that are sufficiently similar that they can be used interchangeably in some information retrieval applications. In order to avoid the possibility of compound errors when combining mappings across more than two concept schemes, skos:closeMatch is not declared to be a transitive property."@en . + . + "has related match"@en . + "skos:relatedMatch is used to state an associative mapping link between two conceptual resources in different concept schemes."@en . + . + "has top concept"@en . + "used to link a concept scheme to the SKOS concept(s) which are topmost in the hierarchical relations for that scheme"@en . + . + "is top concept in scheme"@en . + "Relates a concept to the concept scheme that it is a top level concept of."@en . + . + "concept scheme"@en . + "skos:ConceptScheme is an instance of owl:Class."@en . + . + "label"@en . + . + "comment"@en . + . + "sub class of"@en . + . + "type"@en . + "The subject is an instance of a class."@en . + . + "datatype"@en . + "Datatype is the class of datatypes. All instances of rdfs:Datatype correspond to the RDF model of a datatype described in the RDF Concepts specification [RDF12-CONCEPTS]. rdfs:Datatype is both an instance of and a subclass of rdfs:Class. Each instance of rdfs:Datatype is a subclass of rdfs:Literal."@en . + . + "description"@en . + "Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource."@en . + . + "bibliographic citation"@en . + "A bibliographic reference for the resource."@en . + . + "contributor"@en . + "An entity responsible for making contributions to the resource."@en . + . + "location"@en . + "A spatial region or named place."@en . + . + "identifier"@en . + "An unambiguous reference to the resource within a given context."@en . + . + "issued"@en . + "Date of formal issuance of the resource."@en . + . + "created"@en . + "Date of creation of the resource."@en . + . + "creator"@en . + "An entity responsible for making contributions to the resource."@en . + . + "license"@en . + "A legal document giving official permission to do something with the resource."@en . + . + "publisher"@en . + "An entity responsible for making the resource available."@en . + . + "title"@en . + "A name given to the resource."@en . + . + "has unique identifier"@en . + "Has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it."@en . + . + "is unique identifier for"@en . + "Is unique identifier for is a relation between an identifier and an entity that it uniquely identifies."@en . + . + "has identifier"@en . + "A relation between an entity and an identifier."@en . + . + "is identifier for"@en . + "A relation between an identifier and an entity."@en . + . + "has annotation"@en . + "Has annotation is a relation between an entity and some textual anntotation."@en . + . + "is annotation of"@en . + "Is annotation of is a relation between some textual entity and the entity that it annotates."@en . + . + "has property"@en . + "Has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it."@en . + . + "is property of"@en . + "Is property of is a relation betweena quality, capability or role and the entity that it and it alone bears."@en . + . + "is specialisation of"@en . + "Is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other."@en . + . + "is related to"@en . + "A is related to B iff there is some relation between A and B."@en . + . + "is base for"@en . + "Is base for is a relation between a quality and the realizable entity that it is the basis for."@en . + . + "has basis"@en . + "Has basis is a relation between a realizable entity and the quality that forms the basis for it."@en . + . + "refers to"@en . + "Refers to is a relation between one entity and the entity that it makes reference to."@en . + . + "database table"@en . + "A database table is a set of named columns with zero or more rows composed of cells that contain column values and is part of a database."@en . + . + "database"@en . + "A database is a set of tables."@en . + . + "database row"@en . + "A database row is a row that is part of a database table."@en . + . + "database entry"@en . + "A database entry is a single, implicitly structured data item in a table."@en . + . + "database column"@en . + "A database collumn is a column in a database table."@en . + . + "computational entity"@en . + "A computational entity is an information content entity operated on using some computational system."@en . + . + "metadata"@en . + "Metadata is data that provides information about data."@en . + "traitDescription"@en . + "A short, unambiguous definition of the trait as used in the specific study context; may refer to a method of measurement; may copy the description of a public trait ontology;"@en . + "The definition should make use of terms provided by existing public ontologies, e.g. 'the mass (PATO:mass), either fresh or dried, of a fruit (PO:fruit)'"@en . + . + "minAllowedValue"@en . + "A lower boundary for accepted numerical values."@en . + "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude."@en . + . + "maxAllowedValue"@en . + "An upper boundary for accepted numerical values."@en . + "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude, or constrain entries to positive values."@en . + . + "valueType"@en . + "Type of trait values. Possible entries are 'numeric', 'integer', 'categorical', 'ordinal', 'logical', or 'character'."@en . + "Numerical values represent measurements of length, volumes, ratios, rates or timespans. Integer values apply to count data (e.g. eggs per clutch). Binary data (encoded as 0 or 1) or logical data (coded as TRUE or FALSE) may apply to qualitative traits such as specific behavior during mating (e.g. are territories defended) or specialization to a given habitat (e.g. species restricted to relicts of primeval forests). Categorical traits should define a constrained set of factor levels, such as sex differences in wing morphology (both sexes winged, both sexes unwinged, only males winged, only females winged) or unconstrained entries such as color. Ordinal categorical traits may be better encoded as integer values, e.g. a logical sequence as in the case of life stages or hibernation stages, or habitat preference traits such as horizontal stratum use."@en . + . + "identifier"@en . + "A unique identifier for the trait; globally unique or dataset-specific"@en . + "Identifiers are ideally globally unique and stable URIs which link to the source of the trait description in a public ontology or thesaurus of traits;"@en . + . + "trait"@en . + "A descriptive trait name."@en . + "Trait names should be unique but intuitively comprehensible. Additional specifications such as unit of measurement can be included in the name. Several words are separated by “_“."@en . + . + "expectedUnit"@en . + "The unit expected for measurement entries."@en . + "Only applies to numerical traits. Should be given in SI units."@en . + . + "factorLevels"@en . + "A comma separated list of terms comprising the constrained vocabulary for categorical traits or ordinal binary traits."@en . + "Ordinal traits may be encoded with numerically indexed factor levels; e.g.�1_egg, 2_larvae, 3_pupae, 4_adult; the field traitDescription should define the factor levels;"@en . + . + "comments"@en . + "Details and Examples for clarification of the trait definition."@en . + "Can contain definition of trait levels or requirements for standardized conditions."@en . + . + "Occurrence"@en . + "An extension that contains information on the level of individual specimens, such as date and location, or method of sampling and preservation, or physiological specifications of the phenotype, such as sex, life stage or age."@en . + . + "MeasurementOrFact"@en . + "An extension that contains information at the level of single measurements or reported values, such as the original literature from where the value is cited, the method of measurement or statistical method used for aggregation."@en . + . + "Taxon"@en . + "An extension provides further terms for specifying the taxonomic resolution of the observation."@en . + "Traitdata"@en . + "Metadata"@en . + "individualCount"@en . + "If measurement is an aggregate measure of multiple individuals or specimens, report number of specimens as count, i.e. integer number. Defaults to 1"@en . + . + "datasetDescription"@en . + "An account of the resource."@en . + "Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource."@en . + . + "traitID"@en . + "Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits."@en . + "Examples: TO:0000181; TOP103; http://top-thesaurus.org/annotationInfo?viz=1&&trait=Seed_mass;"@en . + "eventDate"@en . + "The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E). For lower precision, use year, month and day field instead."@en . + "traitValue"@en . + "Standardized measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits."@en . + "traitUnit"@en . + "The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus."@en . + "population"@en . + "A collection of organisms, all of the same species, that live in the same place."@en . + . + "organism"@en . + "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en . + . + "family name"@en . + "An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children."@en . + . + "given name"@en . + "A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name."@en . + . + "ORCID identifier"@en . + "A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor."@en . + . + "has Contributor Affiliation"@en . + "The organizational or institutional affiliation of the contributor."@en . + . + "Contributor Role"@en . + "The role of the contributor in bringing the described dataset into existence."@en . + . + "Contact Person"@en . + "Person with knowledge of how to access, troubleshoot, or otherwise field issues related to the resource"@en . + . + "Data Curator"@en . + "Person tasked with reviewing, enhancing, cleaning, or standardizing metadata and the associated data submitted for storage, use, and maintenance within a data centre or repository"@en . + . + "Data Collector"@en . + "Person/institution responsible for finding, gathering/collecting data under the guidelines of the author(s) or Principal Investigator (PI)"@en . + . + "Related Person"@en . + "A person without a specifically defined role in the development of the resource, but who is someone the author wishes to recognize."@en . + . + "Rights Holder"@en . + "Person or institution owning or managing property rights, including intellectual property rights over the resource."@en . + . + "Cites"@en . + "indicates that A includes B in a citation"@en . + . + "Is Cited By"@en . + "indicates that B includes A in a citation"@en . + . + "Compiles"@en . + "indicates B is the result of a compile or creation event using A"@en . + . + "Is Compiled By"@en . + "indicates B is used to compile or create A"@en . + . + "Has Metadata"@en . + "indicates resource A has additional metadata B"@en . + . + "Has Version"@en . + "indicates A has a version (B)"@en . + . + "Is Metadata For"@en . + "indicates additional metadata A for a resource B"@en . + . + "sameAs"@en . + "The property that determines that two given individuals are equal."@en . + . + "integer"@en . + . + "date"@en . + . + "decimal"@en . + . + "string"@en . + . + "anyURI"@en . + . + "Name"@en . + . + "The traits.build ontology documents the output structure of a database built using the {traits.build} R package."@en . + ""^^ . + ""^^ . + . + "traits.build"@en . + "traits.build"@en . + "traits.build"@en . + ""^^ . + "Daniel Falster" . + "Elizabeth Wenk" . + "Sophie Yang" . + "01 February 2024^^" . + ""^^ . diff --git a/ontology/output/ontology/release/1.0.0/traits.build.nt b/ontology/output/ontology/release/1.0.0/traits.build.nt new file mode 100644 index 00000000..16394c34 --- /dev/null +++ b/ontology/output/ontology/release/1.0.0/traits.build.nt @@ -0,0 +1,1989 @@ + "traits.build database"@en + "traits.build_database"@en + + "traits.build database"@en + "A database of 13 relational tables build using the {traits.build} R-package for harmonizing trait data."@en + "01 February 2024"^^ + + "traits table"@en + "traits"@en + + + + + + "traits table"@en + "A table containing measurements of traits."@en + "Includes information that must be recorded at the Measurement or Observation level."@en + "01 February 2024"^^ + + + "contexts table"@en + "contexts"@en + + + "contexts table"@en + "A table containing observations of contextual characteristics associated with information in `traits`. Cross referencing between the two dataframes is possible using combinations of the variables `dataset_id`, `link_id`, and `link_vals`."@en + "01 February 2024"^^ + + "locations table"@en + "locations"@en + + + + "locations table"@en + "A table containing observations of location/site characteristics associated with information in `traits`. Cross referencing between the two dataframes is possible using combinations of the variables `dataset_id`, `location_name`."@en + "Includes information about Location properties."@en + "01 February 2024"^^ + + "methods table"@en + "methods"@en + + + + "methods table"@en + "A table containing details on methods with which data were collected, including time frame and source. Cross referencing with the `traits` table is possible using combinations of the variables `dataset_id`, `trait_name`."@en + "01 February 2024"^^ + + "excluded data table"@en + "excluded_data"@en + + + "excluded data table"@en + "A table of data that did not pass quality tests and so were excluded from the master dataset. The structure is identical to that presented in the `traits` table, only with an extra column called `error` indicating why the record was excluded. Common reasons are missing_unit_conversions, missing_value, and unsupported_trait_value."@en + "01 February 2024"^^ + + "taxonomic updates table"@en + "taxonomic_updates"@en + + + "taxonomic updates table"@en + "A table of all taxonomic changes implemented in the construction of AusTraits. Changes are determined by comparing the originally submitted taxon name against the taxonomic names listed in the taxonomic reference files, best placed in a subfolder in the `config` folder . Cross referencing with the `traits` table is possible using combinations of the variables `dataset_id` and `taxon_name`."@en + "01 February 2024"^^ + + "taxa table"@en + "taxa"@en + + + + "taxa table"@en + "A table containing details on taxa associated with information in `traits`. Whenever possible, this information is sourced from curated taxon lists that include identifiers for each taxon. The information compiled in this table is released under a CC-BY3 license. Cross referencing between the two dataframes is possible using combinations of the variable `taxon_name`."@en + "01 February 2024"^^ + + + "contributors table"@en + "contributors"@en + + + "contributors table"@en + "A table of people contributing to each study."@en + "01 February 2024"^^ + + "sources table"@en + "sources"@en + + + "sources table"@en + "A list containing citation details for all database sources."@en + "01 February 2024"^^ + + "definitions table"@en + "definitions"@en + + + + "definitions table"@en + "A list containing trait concept descriptions used to build the database."@en + "01 February 2024"^^ + + + "schema"@en + "schema"@en + + + "schema"@en + "A copy of the schema for all tables and terms. Information included here was used to process data and generate any documentation for the study."@en + "01 February 2024"^^ + + "metadata table"@en + "metadata"@en + + + + "metadata table"@en + "A list containing database metadata."@en + "01 February 2024"^^ + + "build info"@en + "build_info"@en + + + "build info"@en + "A description of the computing environment used to create this version of the dataset, including version number, git commit and R session_info."@en + "01 February 2024"^^ + + "dataset"@en + "dataset"@en + + + "dataset"@en + + "13 relational tables and lists containing all data about a dataset."@en + "01 February 2024"^^ + + + "observation"@en + "observation"@en + + + "observation"@en + + "An Observation is a collection of measurements made at a single point in time. In traits.build it is the subset of rows within the traits data that are made on the same entity and share the same observation_id."@en + "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single "observation event". Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism."@en + "01 February 2024"^^ + + + "observations from dataset"@en + "observations_from_dataset"@en + + + + + + + + + "observations from dataset"@en + + + "Observation collection encompassing all observations that comprise a dataset."@en + "01 February 2024"^^ + + "observations from source"@en + "observations_from_source"@en + + + + + + + + + "observations from source"@en + + + "Observation collection encompassing all observations for a single published or unpublished source."@en + "01 February 2024"^^ + + "observations of taxon"@en + "observations_of_taxon"@en + + + + "observations of taxon"@en + + + "Observation collection encompassing all observations on a single taxon within a single dataset."@en + "An observation collection is a container for a set of observations."@en + "01 February 2024"^^ + + "observations at location"@en + "observations_at_location"@en + + + + + "observations at location"@en + + + + + "Observation collection of location properties and organismal traits at a single location."@en + "01 February 2024"^^ + + "observation of location"@en + "observation_of_location"@en + + + + "observation of location"@en + + + "Observation of location properties at a single location."@en + "01 February 2024"^^ + + "observations of population"@en + "observations_of_population"@en + + + + "observations of population"@en + + + "Observation collection encompassing all observations on a single population."@en + "01 February 2024"^^ + + "observations of individual"@en + "observations_of_individual"@en + + + + "observations of individual"@en + + + "Observation collection encompassing all observations on a single individual."@en + "01 February 2024"^^ + + "observation of a treatment context"@en + "observation_of_treatment_context"@en + + + + "observation of a treatment context"@en + + + + "Observation where entity is a context indicating experimental manipulations that might affect the trait values measured on an individual, population or species-level entities."@en + "Examples include growing temperature, growing CO2 concentrations, and nutrient amendments."@en + "01 February 2024"^^ + + "observation of plot context"@en + "observation_of_plot_context"@en + + + + "observation of plot context"@en + + + + "Observation where entity is a category of context indicating variation across plots at a single location might affect the trait values measured on individual or population-level entities."@en + "01 February 2024"^^ + + "observation of entity context"@en + "observation_of_entity_context"@en + + + + "observation of entity context"@en + + + + + + "Observation where entity is a category of context indicating repeat observations have been made on an individual, population or species-level entity across time which might affect the entity's measured trait values."@en + "01 February 2024"^^ + + "observation of temporal context"@en + "observation_of_temporal_context"@en + + + + "observation of temporal context"@en + + + + "Observation where entity is a category of context indicating repeat observations have been made on a plot, which might affect the trait values measured on individual or population-level entities."@en + "Examples of temporal contexts are `sampling season`, `sampling time of day`, and sequential `observation numbers` without any linked categorical description."@en + "01 February 2024"^^ + + "measurement"@en + "measurement"@en + + + "measurement"@en + "A measurement is an assertion that a characteristic of an entity had a particular value with respect to an observation event."@en + "01 February 2024"^^ + + + "trait measurement"@en + "trait_measurement"@en + + + + + + + + + + "trait measurement"@en + + "A measurement made on a trait."@en + "01 February 2024"^^ + + "measurement of location property"@en + "measurement_of_location_property"@en + + + + + "measurement of location property"@en + + "A measurement made on a location property."@en + "01 February 2024"^^ + + "measurement of treatment context property"@en + "measurement_of_treatment_context_property"@en + + + + "measurement of treatment context property"@en + + + "A measurement made on a treatment context property."@en + "01 February 2024"^^ + + "measurement of plot context property"@en + "measurement_of_plot_context_property"@en + + + + "measurement of plot context property"@en + + "A measurement made on a plot context property."@en + "01 February 2024"^^ + + "measurement of entity context property"@en + "measurement_of_entity_context_property"@en + + + + "measurement of entity context property"@en + + "A measurement made on an entity context property."@en + "01 February 2024"^^ + + "measurement of temporal context property"@en + "measurement_of_temporal_context_property"@en + + + + "measurement of temporal context property"@en + + "A measurement made on a temporal context property."@en + "01 February 2024"^^ + + "entity"@en + "entity"@en + + + "entity"@en + "An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity."@en + "01 February 2024"^^ + + + "individual"@en + "individual"@en + + + + + "individual"@en + "An individual living organism."@en + "01 February 2024"^^ + + + "population"@en + "population"@en + + + + + "population"@en + "A collection of organisms, all of the same species, that live in the same place."@en + "01 February 2024"^^ + + + "taxon"@en + "taxon"@en + + + "taxon"@en + "A circumscribed set of organisms."@en + "01 February 2024"^^ + + "location"@en + "location"@en + + + + "location"@en + + "A spatial region or named place."@en + "01 February 2024"^^ + + + "context"@en + "context"@en + + + "context"@en + "The situation within which a trait measurement is made, which can help explain the measured trait value."@en + "01 February 2024"^^ + + "plot context"@en + "plot"@en + + + + "plot context"@en + "A subdivision of a location, designated because some properties differ across plots within a location, which might cause differences in measured trait values between plots."@en + "01 February 2024"^^ + + "treatment context"@en + "treatment"@en + + + + "treatment context"@en + "An experimental manipulation that subjects different individuals or populations to different conditions, which can lead to differences in measured trait values across treatments."@en + "01 February 2024"^^ + + "temporal context"@en + "temporal_context"@en + + + + "temporal context"@en + "A situation or process that varies across time and might cause the measured trait values of individuals or populations to change across time."@en + "01 February 2024"^^ + + "method context"@en + "method_context"@en + + + + "method context"@en + "A compment of a trait measurement protocol that is changed between individual trait measurements and might cause the measured trait values of individuals or populations to change."@en + "01 February 2024"^^ + + "dataset id"@en + "dataset_id"@en + + + + + + + + + + "dataset id"@en + + "Primary identifier for each study contributed to AusTraits, most often these are scientific papers, books, or online resources. By default this should be the name of the first author and year of publication, e.g. `Falster_2005`."@en + "01 February 2024"^^ + + "taxon name"@en + "taxon_name"@en + + + + + + + + "taxon name"@en + + + + + + + + "Scientific name of the taxon on which traits were sampled, without authorship. When possible, this is the currently accepted (botanical) or valid (zoological) scientific name, but might also be a higher taxonomic level."@en + + "01 February 2024"^^ + + "observation id"@en + "observation_id"@en + + + + "observation id"@en + + "A unique integral identifier for the observation, where an observation is all measurements made on an individual at a single point in time. It is important for joining traits coming from the same `observation_id`. Within each dataset, observation_id's are unique combinations of `taxon_name`, `population_id`, `individual_id`, and `temporal_context_id`."@en + "01 February 2024"^^ + + "trait name"@en + "trait_name"@en + + + + + + + "trait name"@en + "Name of the trait sampled. Allowable values specified in the table `definitions`."@en + "01 February 2024"^^ + + + + "value"@en + "value"@en + + + + + + "value"@en + "The measured value of a trait."@en + "01 February 2024"^^ + + + "unit"@en + "unit"@en + + + + + "unit"@en + "Units of the sampled trait value after aligning with AusTraits standards."@en + "01 February 2024"^^ + + + + "entity type"@en + "entity_type"@en + + + "entity type"@en + "A categorical variable specifying the entity corresponding to the trait values recorded."@en + + "01 February 2024"^^ + + "value type"@en + "value_type"@en + + + + "value type"@en + "A categorical variable describing the statistical nature of the trait value recorded."@en + + "01 February 2024"^^ + + + "basis of value"@en + "basis_of_value"@en + + + + "basis of value"@en + "A categorical variable describing how the trait value was obtained."@en + + "01 February 2024"^^ + + + "replicates"@en + "replicates"@en + + + + "replicates"@en + "Number of replicate measurements that comprise a recorded trait measurement. A numeric value (or range) is ideal and appropriate if the value type is a `mean`, `median`, `min` or  `max`. For these value types, if replication is unknown the entry should be `unknown`. If the value type is `raw_value` the replicate value should be 1. If the trait is categorical or the value indicates a measurement for an entire species (or other taxon) replicate value should be `.na`."@en + + "01 February 2024"^^ + + + "basis of record"@en + "basis_of_record"@en + + + + "basis of record"@en + "A categorical variable specifying from which kind of specimen traits were recorded."@en + + "01 February 2024"^^ + + "life stage"@en + "life_stage"@en + + + + + + "life stage"@en + + "A field to indicate the life stage or age class of the entity measured. Standard values are `adult`, `sapling`, `seedling` and `juvenile`."@en + + "01 February 2024"^^ + + + "population id"@en + "population_id"@en + + + + "population id"@en + + "A unique integer identifier for a population, where a population is defined as individuals growing in the same location (location_id /location_name) and plot (plot_context_id, a context category) and being subjected to the same treatment (treatment_context_id, a context category)."@en + + "01 February 2024"^^ + + "individual id"@en + "individual_id"@en + + + + "individual id"@en + + "A unique integer identifier for an individual, with individuals numbered sequentially within each dataset by taxon by population grouping. Most often each row of data represents an individual, but in some datasets trait data collected on a single individual is presented across multiple rows of data, such as if the same trait is measured using different methods or the same individual is measured repeatedly across time."@en + + "01 February 2024"^^ + + "repeat measurements id"@en + "repeat_measurements_id"@en + + + + "repeat measurements id"@en + + + "A unique integer identifier for repeat measurements of a trait that comprise a single observation, such as a response curve."@en + + "01 February 2024"^^ + + "source id"@en + "source_id"@en + + + + + "source id"@en + + "For datasets that are compilations, an identifier for the original data source."@en + + "01 February 2024"^^ + + "location id"@en + "location_id"@en + + + + + "location id"@en + + "A unique integer identifier for a location, with locations numbered sequentially within a dataset. The identifier links to specific information in the location table."@en + + "01 February 2024"^^ + + "treatment context id"@en + "treatment_context_id"@en + + + + + "treatment context id"@en + + "A unique integer identifier for a treatment, where a treatment is any experimental manipulation to an organism's growing/living conditions. The identifier links to specific information in the context table."@en + + "01 February 2024"^^ + + "plot context id"@en + "plot_context_id"@en + + + + + "plot context id"@en + + "A unique integer identifier for a plot, where a plot is a distinct collection of organisms within a single geographic location, such as plants growing on different aspects or blocks in an experiment. The identifier links to specific information in the context table."@en + + "01 February 2024"^^ + + "entity context id"@en + "entity_context_id"@en + + + + + "entity context id"@en + + "A unique integer identifier indicating specific contextual properties of an individual, possibly including the individual's sex or caste (for social insects)."@en + + "01 February 2024"^^ + + "temporal context id"@en + "temporal_context_id"@en + + + + + "temporal context id"@en + + "A unique integer identifier assigned where repeat observations are made on the same individual (or population, or taxon) across time. The identifier links to specific information in the context table."@en + + "01 February 2024"^^ + + "method context id"@en + "method_context_id"@en + + + + + "method context id"@en + "A unique integer identifier indicating a trait is measured multiple times on the same entity, with different methods used for each entry. This field is only used if a single trait is measured using multiple methods within the same dataset. The identifier links to specific information in the context table."@en + + "01 February 2024"^^ + + "collection date"@en + "collection_date"@en + + + + + + "collection date"@en + + "Date sample was taken, in the format `yyyy-mm-dd`, `yyyy-mm` or `yyyy`, depending on the resoluton specified. Alternatively an overall range for the study can be indicating, with the starting and ending sample date sepatated by a `/`, as in 2010-10/2011-03"@en + + "01 February 2024"^^ + + + "measurement remarks"@en + "measurement_remarks"@en + + + + "measurement remarks"@en + "Brief comments or notes accompanying the trait measurement."@en + + "01 February 2024"^^ + + "method id"@en + "method_id"@en + + + + + "method id"@en + + + "A unique integer identifier to distinguish between multiple sets of methods used to measure a single trait within the same dataset. The identifier links to specific information in the methods table."@en + + "01 February 2024"^^ + + "original taxon name"@en + "original_name"@en + + + + + + "original taxon name"@en + "Name given to taxon in the original data supplied by the authors."@en + + "01 February 2024"^^ + + "location name"@en + "location_name"@en + + + + + "location name"@en + "The location name used by the data contributor or a generic location name designated by AusTraits when one is not provided."@en + + "01 February 2024"^^ + + "location property"@en + "location_property"@en + + + + "location property"@en + + + "The location characteristic being recorded. The name should include units of measurement, e.g. `MAT (C)`. Ideally we have at least the following variables for each location, `longitude (deg)`, `latitude (deg)`, `description`."@en + + "01 February 2024"^^ + + "location property value"@en + "value"@en + + + + + "location property value"@en + "The measured value of a location property."@en + + "01 February 2024"^^ + + "latitude (deg)"@en + "latitude"@en + + + + + + "latitude (deg)"@en + + + "The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive."@en + + "01 February 2024"^^ + + + "longitude (deg)"@en + "longitude"@en + + + + + + "longitude (deg)"@en + + + "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive."@en + + "01 February 2024"^^ + + + "elevation (m)"@en + "elevation"@en + + + + + + "elevation (m)"@en + + + "The elevation above mean sea level in meters."@en + + "01 February 2024"^^ + + + "context property"@en + "context_property"@en + + + + + "context property"@en + + + "The contextual characteristic being recorded. If applicable, name should include units of measurement, e.g. `CO2 concentration (ppm)`."@en + + "01 February 2024"^^ + + + "treatment context property"@en + "treatment_context_property"@en + + + + + "treatment context property"@en + + + "A context characteristic indicating stratified treatments that might affect the trait values measured on an individual or population-level entity."@en + + "01 February 2024"^^ + + + "plot context property"@en + "plot_context_property"@en + + + + + "plot context property"@en + + + "A context characteristic indicating stratified variation within a location that might affect the trait values measured on an individual or population-level entity."@en + + "01 February 2024"^^ + + + "entity context property"@en + "entity_context_property"@en + + + + + "entity context property"@en + + + "A context characteristic indicating stratified variation across individuals or populations might affect the trait values measured."@en + + "01 February 2024"^^ + + + "temporal context property"@en + "temporal_context_property"@en + + + + + "temporal context property"@en + + + "A context characteristic indicating stratified variation across time might affect the trait values measured."@en + + "01 February 2024"^^ + + + "method context property"@en + "method_context_property"@en + + + + + "method context property"@en + + + "A context characteristic indicating stratified variation in the protocol used to measure traits might affect the trait values measured."@en + + "01 February 2024"^^ + + + "context property category"@en + "category"@en + + + + "context property category"@en + + "The category of context property, with options being `plot`, `treatment`, `individual_context`, `temporal` and `method`."@en + + "01 February 2024"^^ + + "context property value"@en + "value"@en + + + + + + "context property value"@en + "The measured value of a context property."@en + + "01 February 2024"^^ + + "context property value description"@en + "description"@en + + + + "context property value description"@en + + "Description of a specific context property value."@en + + "01 February 2024"^^ + + "context propety link id"@en + "link_id"@en + + + + "context propety link id"@en + + + + + + "Variable indicating which identifier column in the traits table contains the specified `link_vals`."@en + + "01 February 2024"^^ + + "context propety link vals"@en + "link_vals"@en + + + + "context propety link vals"@en + + + + + + "Unique integer identifiers that link between identifier columns in the `traits` table and the contextual properties/values in the `contexts` table."@en + + "01 February 2024"^^ + + "methods"@en + "methods"@en + + + + + "methods"@en + "A textual description of the methods used to collect the trait data. Whenever available, methods are taken near-verbatim from the referenced source. Methods can include descriptions such as 'measured on botanical collections', 'data from the literature', or a detailed description of the field or lab methods used to collect the data."@en + + "01 February 2024"^^ + + "dataset description"@en + "description"@en + + + + + "dataset description"@en + + "A 1-2 sentence description of the purpose of the study."@en + + "01 February 2024"^^ + + + "dataset sampling strategy"@en + "sampling_strategy"@en + + + + "dataset sampling strategy"@en + + "When available, this information is lifted verbatim from a published manuscript. For preserved specimens, this field ideally indicates which records were 'sampled' to measure a specific trait."@en + + "01 February 2024"^^ + + + "source primary key"@en + "source_primary_key"@en + + + + + "source primary key"@en + + "Citation key for the primary source in `sources`. The key is typically formatted as `Surname_year`."@en + + "01 February 2024"^^ + + + "source primary citation"@en + "source_primary_citation"@en + + + + "source primary citation"@en + + + "Citation for the primary source. This detail is generated from the primary source in the metadata."@en + + "01 February 2024"^^ + + "source secondary key"@en + "source_secondary_key"@en + + + + "source secondary key"@en + + "Citation key for the secondary source in `sources`. The key is typically formatted as `Surname_year`."@en + + "01 February 2024"^^ + + "source secondary citation"@en + "source_secondary_citation"@en + + + + "source secondary citation"@en + + + "Citations for the secondary source. This detail is generated from the secondary source in the metadata."@en + + "01 February 2024"^^ + + "source original dataset key"@en + "source_original_dataset_key"@en + + + + + "source original dataset key"@en + + "Citation key for the original dataset_id in sources, for compilations. The key is typically formatted as `Surname_year`."@en + + "01 February 2024"^^ + + + "source original dataset citation"@en + "source_original_dataset_citation"@en + + + + "source original dataset citation"@en + + + "Citations for the original dataset_id in sources, for compilationse. This detail is generated from the original source in the metadata."@en + + "01 February 2024"^^ + + "contributor"@en + "contributor"@en + + + + + "contributor"@en + + "A person contributing to a dataset."@en + + "01 February 2024"^^ + + + "assistants"@en + "assistants"@en + + + + + "assistants"@en + + "People who played a more minor role in data collection for the study."@en + + "01 February 2024"^^ + + + "dataset curators"@en + "dataset_curators"@en + + + + + "dataset curators"@en + + "Database team member(s) who contacted the data collectors and added the study to the database repository."@en + + "01 February 2024"^^ + + + "data collectors"@en + "data_collectors"@en + + + + + + "data collectors"@en + + + + + + + "Person contributing to a dataset as a data collector."@en + + "01 February 2024"^^ + + + "last name"@en + "last_name"@en + + + + + "last name"@en + + "Last name of the data collector."@en + + "01 February 2024"^^ + + + "given name"@en + "given_name"@en + + + + + "given name"@en + + "Given names of the data collector."@en + + "01 February 2024"^^ + + + "ORCID identifier"@en + "ORCID"@en + + + + + "ORCID identifier"@en + + "ORCID (Open Researcher and Contributor ID) for the data collector, if available."@en + + "01 February 2024"^^ + + + "affiliation"@en + "affiliation"@en + + + + "affiliation"@en + + "Affiliation of data collector."@en + + "01 February 2024"^^ + + + "additional role"@en + "additional_role"@en + + + + "additional role"@en + + "Any additional roles the data collector had in the study, a field most frequently used to identify which data contributor is the contact person for the dataset."@en + + "01 February 2024"^^ + + + "taxonomic dataset"@en + "taxonomic_dataset"@en + + + + "taxonomic dataset"@en + + "Name of the taxonomy (tree) that contains this concept. ie. APC, AusMoss etc."@en + + "01 February 2024"^^ + + + "taxon rank"@en + "taxon_rank"@en + + + + "taxon rank"@en + + "The taxonomic rank of the most specific name in the scientific name."@en + "This is to clarify cases where information is not given on a species level."@en + + "01 February 2024"^^ + + + "trinomial"@en + "trinomial"@en + + + + + + "trinomial"@en + + "The infraspecific taxon name match for an original name. This column is assigned `na` for taxon name that are at a broader taxonomic_resolution."@en + + "01 February 2024"^^ + + "binomial"@en + "binomial"@en + + + + + + "binomial"@en + + "The species-level taxon name match for an original name. This column is assigned `na` for taxon name that are at a broader taxonomic_resolution."@en + + "01 February 2024"^^ + + "genus"@en + "genus"@en + + + + + + "genus"@en + + "Genus of the taxon without authorship."@en + + "01 February 2024"^^ + + + "family"@en + "family"@en + + + + + + "family"@en + + "Family of the taxon."@en + + "01 February 2024"^^ + + + "taxon distribution"@en + "taxon_distribution"@en + + + "taxon distribution"@en + + "Known distribution of the taxon, by Australian state."@en + + "01 February 2024"^^ + + "establishment means"@en + "establishment_means"@en + + + + "establishment means"@en + + "Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans."@en + + "01 February 2024"^^ + + + "taxonomic status"@en + "taxonomic_status"@en + + + + "taxonomic status"@en + + "The status of the use of the scientificName as a label for the taxon in regard to the 'accepted (or valid) taxonomy'. The assigned taxonomic status must be linked to a specific taxonomic reference that defines the concept."@en + + "01 February 2024"^^ + + + "scientific name"@en + "scientific_name"@en + + + + "scientific name"@en + + + "The full scientific name, with authorship and date information if known."@en + + "01 February 2024"^^ + + + "taxon id"@en + "taxon_id"@en + + + + + "taxon id"@en + + "An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset."@en + + "01 February 2024"^^ + + + "scientific name id"@en + "scientific_name_id"@en + + + + + "scientific name id"@en + + "An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset."@en + + "01 February 2024"^^ + + + "taxon"@en + "taxon"@en + + + + + "taxon"@en + + + + + + + + + + + + "A group of organisms assumed to form a homogeneous unit with regard to associated trait measurements."@en + + "01 February 2024"^^ + + + "aligned name"@en + "aligned_name"@en + + + + + "aligned name"@en + + + + "The taxon name without authorship after implementing automated syntax standardisation and spelling changes as well as manually encoded syntax alignments for this taxon in the metadata file for the corresponding `dataset_id`. This name has not yet been matched to the currently accepted (botanical) or valid (zoological) taxon name in cases where there are taxonomic synonyms, isonyms, orthographic variants, etc."@en + + "01 February 2024"^^ + + "taxonomic resolution"@en + "taxonomic_resolution"@en + + + + "taxonomic resolution"@en + + "The rank of the most specific taxon name (or scientific name) to which a submitted orignal name resolves."@en + + "01 February 2024"^^ + + "trait concept"@en + "trait"@en + + + + "trait concept"@en + + + + + + + + + "A collection of trait values pertaining to a distinct characteristic of a specific part of an organism (cell, tissue, organ, or whole organism)."@en + + "01 February 2024"^^ + + + "trait identifier"@en + "trait_concept_URI"@en + + + + + "trait identifier"@en + + "Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits."@en + + "01 February 2024"^^ + + + + "label"@en + "label"@en + + + + + + "label"@en + + "A concise English label for the trait."@en + + "01 February 2024"^^ + + + + + "description"@en + "description"@en + + + + + "description"@en + + "A short description, generally ranging from 1-3 sentences that clearly indicates the trait’s scope."@en + + "01 February 2024"^^ + + + + "comments"@en + "comments"@en + + + + + "comments"@en + + "Additional notes about the scope of the trait or acceptable methods."@en + + "01 February 2024"^^ + + + + "max allowed values"@en + "allowed_values_max"@en + + + + "max allowed values"@en + + "An upper boundary for accepted numerical values."@en + + "01 February 2024"^^ + + + "min allowed values"@en + "allowed_values_min"@en + + + + "min allowed values"@en + + "A lower boundary for accepted numerical values."@en + + "01 February 2024"^^ + + + "units"@en + "units"@en + + + + "units"@en + + "The preferred units for the trait, conforming to the Unified Code for Units of Measure (UCUM). There are often two entries for units, one that is a string and the second which links to a units of measurement axiom."@en + + "01 February 2024"^^ + + + "allowed categorical values"@en + "allowed_values_levels"@en + + + + + "allowed categorical values"@en + + "Allowed trait values for a categorical trait, including a brief description of the value."@en + + "01 February 2024"^^ + + + + "type"@en + "type"@en + + + + "type"@en + + "Type of trait, specifying if traits are categorical, numeric, or ordinal."@en + + "01 February 2024"^^ + + + "Identifier"@en + "Provides an identifying sequence of characters to refer to an entity within a context. An Identifier can be unique within a local context or a global context."@en + + "Characteristic"@en + "A characteristic represents a property of an entity that can be measured (e.g., height, length, or color). A characteristic of an entity is observed through a measurement, which further asserts a value of the characteristic for the entity. A characteristic type (e.g., 'height') can be associated with many different entities, whereas an individual characteristic (a particular occurrence of the 'height' characteristic) is associated to exactly one entity."@en + + "Standard"@en + "A standard defines a reference for comparing or naming entities via a measurement. A standard can be defined intentionally (e.g., as in the case of units) or extensionally (by listing the values of the standard, e.g., for color this might be red, blue, yellow, etc)."@en + + "Entity"@en + "An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity."@en + + "Observation"@en + "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single 'observation event'. Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism."@en + + "Observation Collection"@en + "An observation collection is a container for a set of observations."@en + + "Protocol"@en + "A protocol is a procedure for generating or processing data."@en + + "Measurement"@en + "A measurement is an assertion that a characteristic of an entity had a particular value with respect to an observation event. A measurement is comprised of a characteristic, a value, a measurement standard, and a protocol. Measurements can also have precision as well as a description of the methods used. Measurements can encapsulate characteristics that were recorded, but not necessarily measured in a physical sense. For example, the name of a location and a taxon can be captured through measurements."@en + + "Unit"@en + "A unit is a standard quantification for physical measurements. A unit is either a base unit, a composite unit, or a derived unit."@en + + "Base Characteristic Qualifier"@en + "A base qualifier denotes a simple, atomic qualifier such as average, minimum, and maximum."@en + + "Measurement Type"@en + "A MeasurementType describes the type of a Measurement in which the Measurement would follow the associated Protocol to record the value of the associated Characteristic of the associated Entity using the associated Standard. Any of these associated properties may be omitted, in which case the MeasurementType is only constrained by the provided associations. A MeasurementType is a hypothetical construct, in that it is not associated with a particular instance of a Measurement."@en + + "Measured Value"@en + "A measurement value is a quantitative or qualitative result of a measurement. Measurement values can contain a coded representation of the result, e.g., as a number or string."@en + + "measurement for"@en + "The measurementFor property gives the observation (observed entitiy) that a measurement is associated with. Each measurement is for exactly one observation."@en + + "has measurement"@en + "The hasMeasurement property gives the measurements of the observed entity."@en + + "characteristic for"@en + "The characteristicFor property gives the entity of the characteristic."@en + + "of entity"@en + "The ofEntity property gives the observed entity of an observation."@en + + "has value"@en + "The hasValue property gives the value of the measurement."@en + + "has context"@en + "The hasContext property asserts that one observation serves as the context for another observation. In a hasContext property the domain is the observation being contextualized and the range is the context. Context defines a semantic relationship between two entities that is a fundamental aspect of the observations, but not necessarily of the entities themselves. For example, most measurements are accomplished in a spatio-temporal framework that might be valuable context. The assertions made by contextual observations are assumed of the contextualized observations. Context is a transitive relationship."@en + + "Taxon"@en + "A group of organisms (sensu http://purl.obolibrary.org/obo/OBI_0100026) considered by taxonomists to form a homogeneous unit."@en + + "taxonID"@en + "An identifier for the set of dwc:Taxon information. May be a global unique identifier or an identifier specific to the data set."@en + + "establishmentMeans"@en + "Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans."@en + + "family"@en + "The full scientific name of the family in which the taxon is classified."@en + + "genus"@en + "The full scientific name of the genus in which the dwc:Taxon is classified."@en + + "infraspecificEpithet"@en + "The name of the lowest or terminal infraspecific epithet of the dwc:scientificName, excluding any rank designation."@en + + "specificEpithet"@en + "The name of the first or species epithet of the dwc:scientificName."@en + + "taxonRank"@en + "The taxonomic rank of the most specific name in the dwc:scientificName."@en + + "nomenclaturalCode"@en + "The nomenclatural code (or codes in the case of an ambiregnal name) under which the dwc:scientificName is constructed."@en + + "taxonomicStatus"@en + "The status of the use of the dwc:scientificName as a label for a taxon. Requires taxonomic opinion to define the scope of a dwc:Taxon. Rules of priority then are used to define the taxonomic status of the nomenclature contained in that scope, combined with the experts opinion. It must be linked to a specific taxonomic reference that defines the concept."@en + + "scientificName"@en + "The full scientific name, with authorship and date information if known. When forming part of a dwc:Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the dwc:identificationQualifier term."@en + + "taxonID"@en + "An identifier for the set of dwc:Taxon information. May be a global unique identifier or an identifier specific to the data set."@en + + "scientificNameID"@en + "An identifier for the nomenclatural (not taxonomic) details of a scientific name."@en + + "Taxon"@en + "A group of organisms (sensu http://purl.obolibrary.org/obo/OBI_0100026) considered by taxonomists to form a homogeneous unit."@en + + "identificationQualifier"@en + "A brief phrase or a standard term ('cf.', 'aff.') to express the determiner's doubts about the dwc:Identification."@en + + "samplingProtocol"@en + "The names of, references to, or descriptions of the methods or protocols used during a dwc:Event."@en + "Recommended best practice is describe a dwc:Event with no more than one sampling protocol. In the case of a summary Event with multiple protocols, in which a specific protocol can not be attributed to specific dwc:Occurrences, the recommended best practice is to separate the values in a list with space vertical bar space ( | ). This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en + + "datasetID"@en + "An identifier for the set of data. May be a global unique identifier or an identifier specific to a collection or institution."@en + + "decimalLatitude"@en + "The geographic latitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive."@en + + "decimalLongitude"@en + "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive."@en + + "verbatimElevation"@en + "The original description of the elevation (altitude, usually above sea level) of the Location."@en + + "measurementValue"@en + "The value of the measurement, fact, characteristic, or assertion."@en + "This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en + "acceptedNameUsage"@en + "The full name, with authorship and date information if known, of the currently valid (zoological) or accepted (botanical) dwc:Taxon."@en + "The full scientific name, with authorship and date information if known, of the accepted (botanical) or valid (zoological) name in cases where the provided dwc:scientificName is considered by the reference indicated in the dwc:accordingTo property, or of the content provider, to be a synonym or misapplied name. When applied to a dwc:Organism or dwc:Occurrence, this term should be used in cases where a content provider regards the provided dwc:scientificName to be inconsistent with the taxonomic perspective of the content provider. For example, there are many discrepancies within specimen collections and observation datasets between the recorded name (e.g., the most recent identification from an expert who examined a specimen, or a field identification for an observed dwc:Organism), and the name asserted by the content provider to be taxonomically accepted."@en + "lifeStage"@en + "The age class or life stage of the dwc:Organism(s) at the time the dwc:Occurrence was recorded."@en + "Recommended best practice is to use a controlled vocabulary. This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en + "basisOfRecord"@en + "The specific nature of the data record."@en + "Recommended best practice is to use a controlled vocabulary such as the set of local names of the identifiers for classes in Darwin Core."@en + "organizedInClass"@en + "Used to organize properties within classes for easier human understanding."@en + + "scope note"@en + "A note that helps to clarify the meaning and/or the use of a concept."@en + + "is in scheme"@en + "Relates a resource (for example a concept) to a concept scheme in which it is included."@en + + "has broader"@en + "Relates a concept to a concept that is more general in meaning."@en + + "has narrower"@en + "Relates a concept to a concept that is more specific in meaning."@en + + "preferred label"@en + "The preferred lexical label for a resource, in a given language."@en + + "alternative label"@en + "An alternative lexical label for a resource."@en + + "has exact match"@en + "skos:exactMatch is used to link two concepts, indicating a high degree of confidence that the concepts can be used interchangeably across a wide range of information retrieval applications."@en + + "has close match"@en + "skos:closeMatch is used to link two concepts that are sufficiently similar that they can be used interchangeably in some information retrieval applications. In order to avoid the possibility of compound errors when combining mappings across more than two concept schemes, skos:closeMatch is not declared to be a transitive property."@en + + "has related match"@en + "skos:relatedMatch is used to state an associative mapping link between two conceptual resources in different concept schemes."@en + + "has top concept"@en + "used to link a concept scheme to the SKOS concept(s) which are topmost in the hierarchical relations for that scheme"@en + + "is top concept in scheme"@en + "Relates a concept to the concept scheme that it is a top level concept of."@en + + "concept scheme"@en + "skos:ConceptScheme is an instance of owl:Class."@en + + "label"@en + + "comment"@en + + "sub class of"@en + + "type"@en + "The subject is an instance of a class."@en + + "datatype"@en + "Datatype is the class of datatypes. All instances of rdfs:Datatype correspond to the RDF model of a datatype described in the RDF Concepts specification [RDF12-CONCEPTS]. rdfs:Datatype is both an instance of and a subclass of rdfs:Class. Each instance of rdfs:Datatype is a subclass of rdfs:Literal."@en + + "description"@en + "Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource."@en + + "bibliographic citation"@en + "A bibliographic reference for the resource."@en + + "contributor"@en + "An entity responsible for making contributions to the resource."@en + + "location"@en + "A spatial region or named place."@en + + "identifier"@en + "An unambiguous reference to the resource within a given context."@en + + "issued"@en + "Date of formal issuance of the resource."@en + + "created"@en + "Date of creation of the resource."@en + + "creator"@en + "An entity responsible for making contributions to the resource."@en + + "license"@en + "A legal document giving official permission to do something with the resource."@en + + "publisher"@en + "An entity responsible for making the resource available."@en + + "title"@en + "A name given to the resource."@en + + "has unique identifier"@en + "Has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it."@en + + "is unique identifier for"@en + "Is unique identifier for is a relation between an identifier and an entity that it uniquely identifies."@en + + "has identifier"@en + "A relation between an entity and an identifier."@en + + "is identifier for"@en + "A relation between an identifier and an entity."@en + + "has annotation"@en + "Has annotation is a relation between an entity and some textual anntotation."@en + + "is annotation of"@en + "Is annotation of is a relation between some textual entity and the entity that it annotates."@en + + "has property"@en + "Has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it."@en + + "is property of"@en + "Is property of is a relation betweena quality, capability or role and the entity that it and it alone bears."@en + + "is specialisation of"@en + "Is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other."@en + + "is related to"@en + "A is related to B iff there is some relation between A and B."@en + + "is base for"@en + "Is base for is a relation between a quality and the realizable entity that it is the basis for."@en + + "has basis"@en + "Has basis is a relation between a realizable entity and the quality that forms the basis for it."@en + + "refers to"@en + "Refers to is a relation between one entity and the entity that it makes reference to."@en + + "database table"@en + "A database table is a set of named columns with zero or more rows composed of cells that contain column values and is part of a database."@en + + "database"@en + "A database is a set of tables."@en + + "database row"@en + "A database row is a row that is part of a database table."@en + + "database entry"@en + "A database entry is a single, implicitly structured data item in a table."@en + + "database column"@en + "A database collumn is a column in a database table."@en + + "computational entity"@en + "A computational entity is an information content entity operated on using some computational system."@en + + "metadata"@en + "Metadata is data that provides information about data."@en + "traitDescription"@en + "A short, unambiguous definition of the trait as used in the specific study context; may refer to a method of measurement; may copy the description of a public trait ontology;"@en + "The definition should make use of terms provided by existing public ontologies, e.g. 'the mass (PATO:mass), either fresh or dried, of a fruit (PO:fruit)'"@en + + "minAllowedValue"@en + "A lower boundary for accepted numerical values."@en + "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude."@en + + "maxAllowedValue"@en + "An upper boundary for accepted numerical values."@en + "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude, or constrain entries to positive values."@en + + "valueType"@en + "Type of trait values. Possible entries are 'numeric', 'integer', 'categorical', 'ordinal', 'logical', or 'character'."@en + "Numerical values represent measurements of length, volumes, ratios, rates or timespans. Integer values apply to count data (e.g. eggs per clutch). Binary data (encoded as 0 or 1) or logical data (coded as TRUE or FALSE) may apply to qualitative traits such as specific behavior during mating (e.g. are territories defended) or specialization to a given habitat (e.g. species restricted to relicts of primeval forests). Categorical traits should define a constrained set of factor levels, such as sex differences in wing morphology (both sexes winged, both sexes unwinged, only males winged, only females winged) or unconstrained entries such as color. Ordinal categorical traits may be better encoded as integer values, e.g. a logical sequence as in the case of life stages or hibernation stages, or habitat preference traits such as horizontal stratum use."@en + + "identifier"@en + "A unique identifier for the trait; globally unique or dataset-specific"@en + "Identifiers are ideally globally unique and stable URIs which link to the source of the trait description in a public ontology or thesaurus of traits;"@en + + "trait"@en + "A descriptive trait name."@en + "Trait names should be unique but intuitively comprehensible. Additional specifications such as unit of measurement can be included in the name. Several words are separated by “_“."@en + + "expectedUnit"@en + "The unit expected for measurement entries."@en + "Only applies to numerical traits. Should be given in SI units."@en + + "factorLevels"@en + "A comma separated list of terms comprising the constrained vocabulary for categorical traits or ordinal binary traits."@en + "Ordinal traits may be encoded with numerically indexed factor levels; e.g.�1_egg, 2_larvae, 3_pupae, 4_adult; the field traitDescription should define the factor levels;"@en + + "comments"@en + "Details and Examples for clarification of the trait definition."@en + "Can contain definition of trait levels or requirements for standardized conditions."@en + + "Occurrence"@en + "An extension that contains information on the level of individual specimens, such as date and location, or method of sampling and preservation, or physiological specifications of the phenotype, such as sex, life stage or age."@en + + "MeasurementOrFact"@en + "An extension that contains information at the level of single measurements or reported values, such as the original literature from where the value is cited, the method of measurement or statistical method used for aggregation."@en + + "Taxon"@en + "An extension provides further terms for specifying the taxonomic resolution of the observation."@en + "Traitdata"@en + "Metadata"@en + "individualCount"@en + "If measurement is an aggregate measure of multiple individuals or specimens, report number of specimens as count, i.e. integer number. Defaults to 1"@en + + "datasetDescription"@en + "An account of the resource."@en + "Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource."@en + + "traitID"@en + "Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits."@en + "Examples: TO:0000181; TOP103; http://top-thesaurus.org/annotationInfo?viz=1&&trait=Seed_mass;"@en + "eventDate"@en + "The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E). For lower precision, use year, month and day field instead."@en + "traitValue"@en + "Standardized measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits."@en + "traitUnit"@en + "The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus."@en + "population"@en + "A collection of organisms, all of the same species, that live in the same place."@en + + "organism"@en + "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en + + "family name"@en + "An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children."@en + + "given name"@en + "A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name."@en + + "ORCID identifier"@en + "A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor."@en + + "has Contributor Affiliation"@en + "The organizational or institutional affiliation of the contributor."@en + + "Contributor Role"@en + "The role of the contributor in bringing the described dataset into existence."@en + + "Contact Person"@en + "Person with knowledge of how to access, troubleshoot, or otherwise field issues related to the resource"@en + + "Data Curator"@en + "Person tasked with reviewing, enhancing, cleaning, or standardizing metadata and the associated data submitted for storage, use, and maintenance within a data centre or repository"@en + + "Data Collector"@en + "Person/institution responsible for finding, gathering/collecting data under the guidelines of the author(s) or Principal Investigator (PI)"@en + + "Related Person"@en + "A person without a specifically defined role in the development of the resource, but who is someone the author wishes to recognize."@en + + "Rights Holder"@en + "Person or institution owning or managing property rights, including intellectual property rights over the resource."@en + + "Cites"@en + "indicates that A includes B in a citation"@en + + "Is Cited By"@en + "indicates that B includes A in a citation"@en + + "Compiles"@en + "indicates B is the result of a compile or creation event using A"@en + + "Is Compiled By"@en + "indicates B is used to compile or create A"@en + + "Has Metadata"@en + "indicates resource A has additional metadata B"@en + + "Has Version"@en + "indicates A has a version (B)"@en + + "Is Metadata For"@en + "indicates additional metadata A for a resource B"@en + + "sameAs"@en + "The property that determines that two given individuals are equal."@en + + "integer"@en + + "date"@en + + "decimal"@en + + "string"@en + + "anyURI"@en + + "Name"@en + + "The traits.build ontology documents the output structure of a database built using the {traits.build} R package."@en + ""^^ + ""^^ + + "traits.build"@en + "traits.build"@en + "traits.build"@en + ""^^ + "Daniel Falster" + "Elizabeth Wenk" + "Sophie Yang" + "01 February 2024^^" + ""^^ diff --git a/ontology/output/ontology/release/1.0.0/traits.build.ttl b/ontology/output/ontology/release/1.0.0/traits.build.ttl new file mode 100644 index 00000000..faa2a581 --- /dev/null +++ b/ontology/output/ontology/release/1.0.0/traits.build.ttl @@ -0,0 +1,2412 @@ +@base . +@prefix rdf: . +@prefix traits.build: . +@prefix dc: . +@prefix skos: . +@prefix dwcattributes: . +@prefix dwc: . +@prefix dcterms: . +@prefix ets: . +@prefix obo: . +@prefix oboe: . +@prefix owl: . +@prefix rdfs: . +@prefix datacite: . +@prefix SIO: . +@prefix gdmt: . + + + dcterms:description "Provides an identifying sequence of characters to refer to an entity within a context. An Identifier can be unique within a local context or a global context."@en ; + skos:inScheme ; + skos:prefLabel "Identifier"@en . + +oboe:BaseCharacteristicQualifier + dcterms:description "A base qualifier denotes a simple, atomic qualifier such as average, minimum, and maximum."@en ; + skos:inScheme ; + skos:prefLabel "Base Characteristic Qualifier"@en . + +oboe:Characteristic + dcterms:description "A characteristic represents a property of an entity that can be measured (e.g., height, length, or color). A characteristic of an entity is observed through a measurement, which further asserts a value of the characteristic for the entity. A characteristic type (e.g., 'height') can be associated with many different entities, whereas an individual characteristic (a particular occurrence of the 'height' characteristic) is associated to exactly one entity."@en ; + skos:inScheme ; + skos:prefLabel "Characteristic"@en . + +oboe:Entity + dcterms:description "An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity."@en ; + skos:inScheme ; + skos:prefLabel "Entity"@en . + +oboe:MeasuredValue + dcterms:description "A measurement value is a quantitative or qualitative result of a measurement. Measurement values can contain a coded representation of the result, e.g., as a number or string."@en ; + skos:inScheme ; + skos:prefLabel "Measured Value"@en . + +oboe:Measurement + dcterms:description "A measurement is an assertion that a characteristic of an entity had a particular value with respect to an observation event. A measurement is comprised of a characteristic, a value, a measurement standard, and a protocol. Measurements can also have precision as well as a description of the methods used. Measurements can encapsulate characteristics that were recorded, but not necessarily measured in a physical sense. For example, the name of a location and a taxon can be captured through measurements."@en ; + skos:inScheme ; + skos:prefLabel "Measurement"@en . + +oboe:MeasurementType + dcterms:description "A MeasurementType describes the type of a Measurement in which the Measurement would follow the associated Protocol to record the value of the associated Characteristic of the associated Entity using the associated Standard. Any of these associated properties may be omitted, in which case the MeasurementType is only constrained by the provided associations. A MeasurementType is a hypothetical construct, in that it is not associated with a particular instance of a Measurement."@en ; + skos:inScheme ; + skos:prefLabel "Measurement Type"@en . + +oboe:Observation + dcterms:description "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single 'observation event'. Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism."@en ; + skos:inScheme ; + skos:prefLabel "Observation"@en . + +oboe:ObservationCollection + dcterms:description "An observation collection is a container for a set of observations."@en ; + skos:inScheme ; + skos:prefLabel "Observation Collection"@en . + +oboe:Protocol + dcterms:description "A protocol is a procedure for generating or processing data."@en ; + skos:inScheme ; + skos:prefLabel "Protocol"@en . + +oboe:Standard + dcterms:description "A standard defines a reference for comparing or naming entities via a measurement. A standard can be defined intentionally (e.g., as in the case of units) or extensionally (by listing the values of the standard, e.g., for color this might be red, blue, yellow, etc)."@en ; + skos:inScheme ; + skos:prefLabel "Standard"@en . + +oboe:Unit + dcterms:description "A unit is a standard quantification for physical measurements. A unit is either a base unit, a composite unit, or a derived unit."@en ; + skos:inScheme ; + skos:prefLabel "Unit"@en . + +oboe:characteristicFor + dcterms:description "The characteristicFor property gives the entity of the characteristic."@en ; + skos:inScheme ; + skos:prefLabel "characteristic for"@en . + +oboe:hasContext + dcterms:description "The hasContext property asserts that one observation serves as the context for another observation. In a hasContext property the domain is the observation being contextualized and the range is the context. Context defines a semantic relationship between two entities that is a fundamental aspect of the observations, but not necessarily of the entities themselves. For example, most measurements are accomplished in a spatio-temporal framework that might be valuable context. The assertions made by contextual observations are assumed of the contextualized observations. Context is a transitive relationship."@en ; + skos:inScheme ; + skos:prefLabel "has context"@en . + +oboe:hasMeasurement + dcterms:description "The hasMeasurement property gives the measurements of the observed entity."@en ; + skos:inScheme ; + skos:prefLabel "has measurement"@en . + +oboe:hasValue + dcterms:description "The hasValue property gives the value of the measurement."@en ; + skos:inScheme ; + skos:prefLabel "has value"@en . + +oboe:measurementFor + dcterms:description "The measurementFor property gives the observation (observed entitiy) that a measurement is associated with. Each measurement is for exactly one observation."@en ; + skos:inScheme ; + skos:prefLabel "measurement for"@en . + +oboe:ofEntity + dcterms:description "The ofEntity property gives the observed entity of an observation."@en ; + skos:inScheme ; + skos:prefLabel "of entity"@en . + +obo:IAO_0000708 + dcterms:description "A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor."@en ; + skos:inScheme ; + skos:prefLabel "ORCID identifier"@en . + +obo:IAO_0020016 + dcterms:description "A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name."@en ; + skos:inScheme ; + skos:prefLabel "given name"@en . + +obo:IAO_0020017 + dcterms:description "An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children."@en ; + skos:inScheme ; + skos:prefLabel "family name"@en . + +obo:OBI_0100026 + dcterms:description "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en ; + skos:inScheme ; + skos:prefLabel "organism"@en . + +obo:PCO_0000001 + dcterms:description "A collection of organisms, all of the same species, that live in the same place."@en ; + skos:inScheme ; + skos:prefLabel "population"@en . + +dcterms:bibliographicCitation + dcterms:description "A bibliographic reference for the resource."@en ; + skos:inScheme ; + skos:prefLabel "bibliographic citation"@en . + +dcterms:contributor + dcterms:description "An entity responsible for making contributions to the resource."@en ; + skos:inScheme ; + skos:prefLabel "contributor"@en . + +dcterms:created + dcterms:description "Date of creation of the resource."@en ; + skos:inScheme ; + skos:prefLabel "created"@en . + +dcterms:creator + dcterms:description "An entity responsible for making contributions to the resource."@en ; + skos:inScheme ; + skos:prefLabel "creator"@en . + +dcterms:description + dcterms:description "Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource."@en ; + skos:inScheme ; + skos:prefLabel "description"@en . + +dcterms:identifier + dcterms:description "An unambiguous reference to the resource within a given context."@en ; + skos:inScheme ; + skos:prefLabel "identifier"@en . + +dcterms:issued + dcterms:description "Date of formal issuance of the resource."@en ; + skos:inScheme ; + skos:prefLabel "issued"@en . + +dcterms:license + dcterms:description "A legal document giving official permission to do something with the resource."@en ; + skos:inScheme ; + skos:prefLabel "license"@en . + +dcterms:location + dcterms:description "A spatial region or named place."@en ; + skos:inScheme ; + skos:prefLabel "location"@en . + +dcterms:publisher + dcterms:description "An entity responsible for making the resource available."@en ; + skos:inScheme ; + skos:prefLabel "publisher"@en . + +dcterms:title + dcterms:description "A name given to the resource."@en ; + skos:inScheme ; + skos:prefLabel "title"@en . + +dwc:Taxon + dcterms:description "A group of organisms (sensu http://purl.obolibrary.org/obo/OBI_0100026) considered by taxonomists to form a homogeneous unit."@en ; + skos:inScheme ; + skos:prefLabel "Taxon"@en . + +dwc:acceptedNameUsage + dcterms:description "The full name, with authorship and date information if known, of the currently valid (zoological) or accepted (botanical) dwc:Taxon."@en ; + rdfs:comment "The full scientific name, with authorship and date information if known, of the accepted (botanical) or valid (zoological) name in cases where the provided dwc:scientificName is considered by the reference indicated in the dwc:accordingTo property, or of the content provider, to be a synonym or misapplied name. When applied to a dwc:Organism or dwc:Occurrence, this term should be used in cases where a content provider regards the provided dwc:scientificName to be inconsistent with the taxonomic perspective of the content provider. For example, there are many discrepancies within specimen collections and observation datasets between the recorded name (e.g., the most recent identification from an expert who examined a specimen, or a field identification for an observed dwc:Organism), and the name asserted by the content provider to be taxonomically accepted."@en ; + skos:prefLabel "acceptedNameUsage"@en . + +dwcattributes:organizedInClass + dcterms:description "Used to organize properties within classes for easier human understanding."@en ; + skos:inScheme ; + skos:prefLabel "organizedInClass"@en . + +dwc:basisOfRecord + dcterms:description "The specific nature of the data record."@en ; + rdfs:comment "Recommended best practice is to use a controlled vocabulary such as the set of local names of the identifiers for classes in Darwin Core."@en ; + skos:prefLabel "basisOfRecord"@en . + +dwc:datasetID + dcterms:description "An identifier for the set of data. May be a global unique identifier or an identifier specific to a collection or institution."@en ; + skos:inScheme ; + skos:prefLabel "datasetID"@en . + +dwc:decimalLatitude + dcterms:description "The geographic latitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive."@en ; + skos:inScheme ; + skos:prefLabel "decimalLatitude"@en . + +dwc:decimalLongitude + dcterms:description "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive."@en ; + skos:inScheme ; + skos:prefLabel "decimalLongitude"@en . + +dwc:establishmentMeans + dcterms:description "Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans."@en ; + skos:inScheme ; + skos:prefLabel "establishmentMeans"@en . + +dwc:family + dcterms:description "The full scientific name of the family in which the taxon is classified."@en ; + skos:inScheme ; + skos:prefLabel "family"@en . + +dwc:genus + dcterms:description "The full scientific name of the genus in which the dwc:Taxon is classified."@en ; + skos:inScheme ; + skos:prefLabel "genus"@en . + +dwc:identificationQualifier + dcterms:description "A brief phrase or a standard term ('cf.', 'aff.') to express the determiner's doubts about the dwc:Identification."@en ; + skos:inScheme ; + skos:prefLabel "identificationQualifier"@en . + +dwc:infraspecificEpithet + dcterms:description "The name of the lowest or terminal infraspecific epithet of the dwc:scientificName, excluding any rank designation."@en ; + skos:inScheme ; + skos:prefLabel "infraspecificEpithet"@en . + +dwc:lifeStage + dcterms:description "The age class or life stage of the dwc:Organism(s) at the time the dwc:Occurrence was recorded."@en ; + rdfs:comment "Recommended best practice is to use a controlled vocabulary. This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en ; + skos:prefLabel "lifeStage"@en . + +dwc:measurementValue + dcterms:description "The value of the measurement, fact, characteristic, or assertion."@en ; + rdfs:comment "This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en ; + skos:prefLabel "measurementValue"@en . + +dwc:nomenclaturalCode + dcterms:description "The nomenclatural code (or codes in the case of an ambiregnal name) under which the dwc:scientificName is constructed."@en ; + skos:inScheme ; + skos:prefLabel "nomenclaturalCode"@en . + +dwc:samplingProtocol + dcterms:description "The names of, references to, or descriptions of the methods or protocols used during a dwc:Event."@en ; + rdfs:comment "Recommended best practice is describe a dwc:Event with no more than one sampling protocol. In the case of a summary Event with multiple protocols, in which a specific protocol can not be attributed to specific dwc:Occurrences, the recommended best practice is to separate the values in a list with space vertical bar space ( | ). This term has an equivalent in the dwciri: namespace that allows only an IRI as a value, whereas this term allows for any string literal value."@en ; + skos:inScheme ; + skos:prefLabel "samplingProtocol"@en . + +dwc:scientificName + dcterms:description "The full scientific name, with authorship and date information if known. When forming part of a dwc:Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the dwc:identificationQualifier term."@en ; + skos:inScheme ; + skos:prefLabel "scientificName"@en . + +dwc:scientificNameID + dcterms:description "An identifier for the nomenclatural (not taxonomic) details of a scientific name."@en ; + skos:inScheme ; + skos:prefLabel "scientificNameID"@en . + +dwc:specificEpithet + dcterms:description "The name of the first or species epithet of the dwc:scientificName."@en ; + skos:inScheme ; + skos:prefLabel "specificEpithet"@en . + +dwc:taxonID + dcterms:description "An identifier for the set of dwc:Taxon information. May be a global unique identifier or an identifier specific to the data set."@en ; + skos:inScheme ; + skos:prefLabel "taxonID"@en . + +dwc:taxonRank + dcterms:description "The taxonomic rank of the most specific name in the dwc:scientificName."@en ; + skos:inScheme ; + skos:prefLabel "taxonRank"@en . + +dwc:taxonomicStatus + dcterms:description "The status of the use of the dwc:scientificName as a label for a taxon. Requires taxonomic opinion to define the scope of a dwc:Taxon. Rules of priority then are used to define the taxonomic status of the nomenclature contained in that scope, combined with the experts opinion. It must be linked to a specific taxonomic reference that defines the concept."@en ; + skos:inScheme ; + skos:prefLabel "taxonomicStatus"@en . + +dwc:verbatimElevation + dcterms:description "The original description of the elevation (altitude, usually above sea level) of the Location."@en ; + skos:inScheme ; + skos:prefLabel "verbatimElevation"@en . + +SIO:SIO_000001 + dcterms:description "A is related to B iff there is some relation between A and B."@en ; + skos:inScheme ; + skos:prefLabel "is related to"@en . + +SIO:SIO_000223 + dcterms:description "Has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it."@en ; + skos:inScheme ; + skos:prefLabel "has property"@en . + +SIO:SIO_000224 + dcterms:description "Is property of is a relation betweena quality, capability or role and the entity that it and it alone bears."@en ; + skos:inScheme ; + skos:prefLabel "is property of"@en . + +SIO:SIO_000254 + dcterms:description "Is annotation of is a relation between some textual entity and the entity that it annotates."@en ; + skos:inScheme ; + skos:prefLabel "is annotation of"@en . + +SIO:SIO_000255 + dcterms:description "Has annotation is a relation between an entity and some textual anntotation."@en ; + skos:inScheme ; + skos:prefLabel "has annotation"@en . + +SIO:SIO_000602 + dcterms:description "A computational entity is an information content entity operated on using some computational system."@en ; + skos:inScheme ; + skos:prefLabel "computational entity"@en . + +SIO:SIO_000628 + dcterms:description "Refers to is a relation between one entity and the entity that it makes reference to."@en ; + skos:inScheme ; + skos:prefLabel "refers to"@en . + +SIO:SIO_000641 + dcterms:description "Has basis is a relation between a realizable entity and the quality that forms the basis for it."@en ; + skos:inScheme ; + skos:prefLabel "has basis"@en . + +SIO:SIO_000642 + dcterms:description "Is base for is a relation between a quality and the realizable entity that it is the basis for."@en ; + skos:inScheme ; + skos:prefLabel "is base for"@en . + +SIO:SIO_000671 + dcterms:description "A relation between an entity and an identifier."@en ; + skos:inScheme ; + skos:prefLabel "has identifier"@en . + +SIO:SIO_000672 + dcterms:description "A relation between an identifier and an entity."@en ; + skos:inScheme ; + skos:prefLabel "is identifier for"@en . + +SIO:SIO_000673 + dcterms:description "Has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it."@en ; + skos:inScheme ; + skos:prefLabel "has unique identifier"@en . + +SIO:SIO_000674 + dcterms:description "Is unique identifier for is a relation between an identifier and an entity that it uniquely identifies."@en ; + skos:inScheme ; + skos:prefLabel "is unique identifier for"@en . + +SIO:SIO_000750 + dcterms:description "A database is a set of tables."@en ; + skos:inScheme ; + skos:prefLabel "database"@en . + +SIO:SIO_000754 + dcterms:description "A database table is a set of named columns with zero or more rows composed of cells that contain column values and is part of a database."@en ; + skos:inScheme ; + skos:prefLabel "database table"@en . + +SIO:SIO_000756 + dcterms:description "A database entry is a single, implicitly structured data item in a table."@en ; + skos:inScheme ; + skos:prefLabel "database entry"@en . + +SIO:SIO_000757 + dcterms:description "A database collumn is a column in a database table."@en ; + skos:inScheme ; + skos:prefLabel "database column"@en . + +SIO:SIO_001096 + dcterms:description "Is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other."@en ; + skos:inScheme ; + skos:prefLabel "is specialisation of"@en . + +SIO:SIO_001187 + dcterms:description "A database row is a row that is part of a database table."@en ; + skos:inScheme ; + skos:prefLabel "database row"@en . + +SIO:SIO_001330 + dcterms:description "Metadata is data that provides information about data."@en ; + skos:prefLabel "metadata"@en . + +ets:MeasurementOrFact + dcterms:description "An extension that contains information at the level of single measurements or reported values, such as the original literature from where the value is cited, the method of measurement or statistical method used for aggregation."@en ; + skos:inScheme ; + skos:prefLabel "MeasurementOrFact"@en . + +ets:Metadata + skos:prefLabel "Metadata"@en . + +ets:Occurrence + dcterms:description "An extension that contains information on the level of individual specimens, such as date and location, or method of sampling and preservation, or physiological specifications of the phenotype, such as sex, life stage or age."@en ; + skos:inScheme ; + skos:prefLabel "Occurrence"@en . + +ets:Taxon + dcterms:description "An extension provides further terms for specifying the taxonomic resolution of the observation."@en ; + skos:prefLabel "Taxon"@en . + +ets:Traitdata + skos:prefLabel "Traitdata"@en . + +ets:comments + dcterms:description "Details and Examples for clarification of the trait definition."@en ; + rdfs:comment "Can contain definition of trait levels or requirements for standardized conditions."@en ; + skos:inScheme ; + skos:prefLabel "comments"@en . + +ets:datasetDescription + dcterms:description "An account of the resource."@en ; + rdfs:comment "Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource."@en ; + skos:inScheme ; + skos:prefLabel "datasetDescription"@en . + +ets:eventDate + dcterms:description "The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E). For lower precision, use year, month and day field instead."@en ; + skos:prefLabel "eventDate"@en . + +ets:expectedUnit + dcterms:description "The unit expected for measurement entries."@en ; + rdfs:comment "Only applies to numerical traits. Should be given in SI units."@en ; + skos:inScheme ; + skos:prefLabel "expectedUnit"@en . + +ets:factorLevels + dcterms:description "A comma separated list of terms comprising the constrained vocabulary for categorical traits or ordinal binary traits."@en ; + rdfs:comment "Ordinal traits may be encoded with numerically indexed factor levels; e.g.�1_egg, 2_larvae, 3_pupae, 4_adult; the field traitDescription should define the factor levels;"@en ; + skos:inScheme ; + skos:prefLabel "factorLevels"@en . + +ets:identifier + dcterms:description "A unique identifier for the trait; globally unique or dataset-specific"@en ; + rdfs:comment "Identifiers are ideally globally unique and stable URIs which link to the source of the trait description in a public ontology or thesaurus of traits;"@en ; + skos:inScheme ; + skos:prefLabel "identifier"@en . + +ets:individualCount + dcterms:description "If measurement is an aggregate measure of multiple individuals or specimens, report number of specimens as count, i.e. integer number. Defaults to 1"@en ; + skos:inScheme ; + skos:prefLabel "individualCount"@en . + +ets:maxAllowedValue + dcterms:description "An upper boundary for accepted numerical values."@en ; + rdfs:comment "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude, or constrain entries to positive values."@en ; + skos:inScheme ; + skos:prefLabel "maxAllowedValue"@en . + +ets:minAllowedValue + dcterms:description "A lower boundary for accepted numerical values."@en ; + rdfs:comment "May be used for eliminating invalid data. This boundary may constrain a range of values of meaningful orders of magnitude."@en ; + skos:inScheme ; + skos:prefLabel "minAllowedValue"@en . + +ets:trait + dcterms:description "A descriptive trait name."@en ; + rdfs:comment "Trait names should be unique but intuitively comprehensible. Additional specifications such as unit of measurement can be included in the name. Several words are separated by “_“."@en ; + skos:inScheme ; + skos:prefLabel "trait"@en . + +ets:traitDescription + dcterms:description "A short, unambiguous definition of the trait as used in the specific study context; may refer to a method of measurement; may copy the description of a public trait ontology;"@en ; + rdfs:comment "The definition should make use of terms provided by existing public ontologies, e.g. 'the mass (PATO:mass), either fresh or dried, of a fruit (PO:fruit)'"@en ; + skos:inScheme ; + skos:prefLabel "traitDescription"@en . + +ets:traitID + dcterms:description "Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits."@en ; + rdfs:comment "Examples: TO:0000181; TOP103; http://top-thesaurus.org/annotationInfo?viz=1&&trait=Seed_mass;"@en ; + skos:prefLabel "traitID"@en . + +ets:traitUnit + dcterms:description "The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus."@en ; + skos:prefLabel "traitUnit"@en . + +ets:traitValue + dcterms:description "Standardized measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits."@en ; + skos:prefLabel "traitValue"@en . + +ets:valueType + dcterms:description "Type of trait values. Possible entries are 'numeric', 'integer', 'categorical', 'ordinal', 'logical', or 'character'."@en ; + rdfs:comment "Numerical values represent measurements of length, volumes, ratios, rates or timespans. Integer values apply to count data (e.g. eggs per clutch). Binary data (encoded as 0 or 1) or logical data (coded as TRUE or FALSE) may apply to qualitative traits such as specific behavior during mating (e.g. are territories defended) or specialization to a given habitat (e.g. species restricted to relicts of primeval forests). Categorical traits should define a constrained set of factor levels, such as sex differences in wing morphology (both sexes winged, both sexes unwinged, only males winged, only females winged) or unconstrained entries such as color. Ordinal categorical traits may be better encoded as integer values, e.g. a logical sequence as in the case of life stages or hibernation stages, or habitat preference traits such as horizontal stratum use."@en ; + skos:inScheme ; + skos:prefLabel "valueType"@en . + +gdmt:Cites + dcterms:description "indicates that A includes B in a citation"@en ; + skos:inScheme ; + skos:prefLabel "Cites"@en . + +gdmt:Compiles + dcterms:description "indicates B is the result of a compile or creation event using A"@en ; + skos:inScheme ; + skos:prefLabel "Compiles"@en . + +gdmt:ContactPerson + dcterms:description "Person with knowledge of how to access, troubleshoot, or otherwise field issues related to the resource"@en ; + skos:inScheme ; + skos:prefLabel "Contact Person"@en . + +gdmt:ContributorRole + dcterms:description "The role of the contributor in bringing the described dataset into existence."@en ; + skos:inScheme ; + skos:prefLabel "Contributor Role"@en . + +gdmt:DataCollector + dcterms:description "Person/institution responsible for finding, gathering/collecting data under the guidelines of the author(s) or Principal Investigator (PI)"@en ; + skos:inScheme ; + skos:prefLabel "Data Collector"@en . + +gdmt:DataCurator + dcterms:description "Person tasked with reviewing, enhancing, cleaning, or standardizing metadata and the associated data submitted for storage, use, and maintenance within a data centre or repository"@en ; + skos:inScheme ; + skos:prefLabel "Data Curator"@en . + +gdmt:HasMetadata + dcterms:description "indicates resource A has additional metadata B"@en ; + skos:inScheme ; + skos:prefLabel "Has Metadata"@en . + +gdmt:HasVersion + dcterms:description "indicates A has a version (B)"@en ; + skos:inScheme ; + skos:prefLabel "Has Version"@en . + +gdmt:IsCitedBy + dcterms:description "indicates that B includes A in a citation"@en ; + skos:inScheme ; + skos:prefLabel "Is Cited By"@en . + +gdmt:IsCompiledBy + dcterms:description "indicates B is used to compile or create A"@en ; + skos:inScheme ; + skos:prefLabel "Is Compiled By"@en . + +gdmt:IsMetadataFor + dcterms:description "indicates additional metadata A for a resource B"@en ; + skos:inScheme ; + skos:prefLabel "Is Metadata For"@en . + +gdmt:RelatedPerson + dcterms:description "A person without a specifically defined role in the development of the resource, but who is someone the author wishes to recognize."@en ; + skos:inScheme ; + skos:prefLabel "Related Person"@en . + +gdmt:RightsHolder + dcterms:description "Person or institution owning or managing property rights, including intellectual property rights over the resource."@en ; + skos:inScheme ; + skos:prefLabel "Rights Holder"@en . + +gdmt:hasContributorAffiliation + dcterms:description "The organizational or institutional affiliation of the contributor."@en ; + skos:inScheme ; + skos:prefLabel "has Contributor Affiliation"@en . + +rdf:datatype + dcterms:description "Datatype is the class of datatypes. All instances of rdfs:Datatype correspond to the RDF model of a datatype described in the RDF Concepts specification [RDF12-CONCEPTS]. rdfs:Datatype is both an instance of and a subclass of rdfs:Class. Each instance of rdfs:Datatype is a subclass of rdfs:Literal."@en ; + skos:inScheme ; + skos:prefLabel "datatype"@en . + +rdfs:comment + skos:inScheme ; + skos:prefLabel "comment"@en . + +rdfs:label + skos:inScheme ; + skos:prefLabel "label"@en . + +rdfs:subClassOf + skos:inScheme ; + skos:prefLabel "sub class of"@en . + +rdfs:type + dcterms:description "The subject is an instance of a class."@en ; + skos:inScheme ; + skos:prefLabel "type"@en . + + + skos:inScheme ; + skos:prefLabel "Name"@en . + + + skos:inScheme ; + skos:prefLabel "anyURI"@en . + + + skos:inScheme ; + skos:prefLabel "date"@en . + + + skos:inScheme ; + skos:prefLabel "decimal"@en . + + + skos:inScheme ; + skos:prefLabel "integer"@en . + + + skos:inScheme ; + skos:prefLabel "string"@en . + +owl:sameAs + dcterms:description "The property that determines that two given individuals are equal."@en ; + skos:inScheme ; + skos:prefLabel "sameAs"@en . + +skos:ConceptScheme + dcterms:description "skos:ConceptScheme is an instance of owl:Class."@en ; + skos:inScheme ; + skos:prefLabel "concept scheme"@en . + +skos:altLabel + dcterms:description "An alternative lexical label for a resource."@en ; + skos:inScheme ; + skos:prefLabel "alternative label"@en . + +skos:broader + dcterms:description "Relates a concept to a concept that is more general in meaning."@en ; + skos:inScheme ; + skos:prefLabel "has broader"@en . + +skos:closeMatch + dcterms:description "skos:closeMatch is used to link two concepts that are sufficiently similar that they can be used interchangeably in some information retrieval applications. In order to avoid the possibility of compound errors when combining mappings across more than two concept schemes, skos:closeMatch is not declared to be a transitive property."@en ; + skos:inScheme ; + skos:prefLabel "has close match"@en . + +skos:exactMatch + dcterms:description "skos:exactMatch is used to link two concepts, indicating a high degree of confidence that the concepts can be used interchangeably across a wide range of information retrieval applications."@en ; + skos:inScheme ; + skos:prefLabel "has exact match"@en . + +skos:hasTopConcept + dcterms:description "used to link a concept scheme to the SKOS concept(s) which are topmost in the hierarchical relations for that scheme"@en ; + skos:inScheme ; + skos:prefLabel "has top concept"@en . + +skos:inScheme + dcterms:description "Relates a resource (for example a concept) to a concept scheme in which it is included."@en ; + skos:inScheme ; + skos:prefLabel "is in scheme"@en . + +skos:narrower + dcterms:description "Relates a concept to a concept that is more specific in meaning."@en ; + skos:inScheme ; + skos:prefLabel "has narrower"@en . + +skos:prefLabel + dcterms:description "The preferred lexical label for a resource, in a given language."@en ; + skos:inScheme ; + skos:prefLabel "preferred label"@en . + +skos:relatedMatch + dcterms:description "skos:relatedMatch is used to state an associative mapping link between two conceptual resources in different concept schemes."@en ; + skos:inScheme ; + skos:prefLabel "has related match"@en . + +skos:scopeNote + dcterms:description "A note that helps to clarify the meaning and/or the use of a concept."@en ; + skos:inScheme ; + skos:prefLabel "scope note"@en . + +skos:topConceptOf + dcterms:description "Relates a concept to the concept scheme that it is a top level concept of."@en ; + skos:inScheme ; + skos:prefLabel "is top concept in scheme"@en . + + + dcterms:created "01 February 2024^^" ; + dcterms:creator "Daniel Falster", "Elizabeth Wenk", "Sophie Yang" ; + dcterms:description "The traits.build ontology documents the output structure of a database built using the {traits.build} R package."@en ; + dcterms:license ""^^ ; + dcterms:publisher ""^^ ; + dcterms:title "traits.build"@en ; + rdfs:label "traits.build"@en ; + rdfs:type skos:ConceptScheme ; + skos:hasTopConcept ""^^ ; + skos:prefLabel "traits.build"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "ORCID (Open Researcher and Contributor ID) for the data collector, if available."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "ORCID identifier"@en ; + owl:sameAs obo:IAO_0000708 ; + skos:altLabel "ORCID"@en ; + skos:broader ; + skos:exactMatch obo:IAO_0000708 ; + skos:inScheme ; + skos:prefLabel "ORCID identifier"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Any additional roles the data collector had in the study, a field most frequently used to identify which data contributor is the contact person for the dataset."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000254 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "additional role"@en ; + owl:sameAs gdmt:ContributorRole ; + skos:altLabel "additional_role"@en ; + skos:exactMatch gdmt:ContributorRole ; + skos:inScheme ; + skos:prefLabel "additional role"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Affiliation of data collector."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000254 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "affiliation"@en ; + owl:sameAs gdmt:hasContributorAffiliation ; + skos:altLabel "affiliation"@en ; + skos:exactMatch gdmt:hasContributorAffiliation ; + skos:inScheme ; + skos:prefLabel "affiliation"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The taxon name without authorship after implementing automated syntax standardisation and spelling changes as well as manually encoded syntax alignments for this taxon in the metadata file for the corresponding `dataset_id`. This name has not yet been matched to the currently accepted (botanical) or valid (zoological) taxon name in cases where there are taxonomic synonyms, isonyms, orthographic variants, etc."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000223 ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000641 ; + SIO:SIO_000642 ; + rdf:datatype ; + rdfs:label "aligned name"@en ; + skos:altLabel "aligned_name"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:inScheme ; + skos:prefLabel "aligned name"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Allowed trait values for a categorical trait, including a brief description of the value."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "allowed categorical values"@en ; + owl:sameAs ets:factorLevels, skos:narrower ; + skos:altLabel "allowed_values_levels"@en ; + skos:exactMatch ets:factorLevels, skos:narrower ; + skos:inScheme ; + skos:prefLabel "allowed categorical values"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "An upper boundary for accepted numerical values."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "max allowed values"@en ; + owl:sameAs ets:maxAllowedValue ; + skos:altLabel "allowed_values_max"@en ; + skos:exactMatch ets:maxAllowedValue ; + skos:inScheme ; + skos:prefLabel "max allowed values"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A lower boundary for accepted numerical values."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "min allowed values"@en ; + owl:sameAs ets:minAllowedValue ; + skos:altLabel "allowed_values_min"@en ; + skos:exactMatch ets:minAllowedValue ; + skos:inScheme ; + skos:prefLabel "min allowed values"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "People who played a more minor role in data collection for the study."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "assistants"@en ; + owl:sameAs gdmt:RelatedPerson ; + skos:altLabel "assistants"@en ; + skos:broader dcterms:contributor ; + skos:exactMatch gdmt:RelatedPerson ; + skos:inScheme ; + skos:prefLabel "assistants"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A categorical variable specifying from which kind of specimen traits were recorded."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "basis of record"@en ; + skos:altLabel "basis_of_record"@en ; + skos:closeMatch dwc:basisOfRecord ; + skos:inScheme ; + skos:prefLabel "basis of record"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A categorical variable describing how the trait value was obtained."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "basis of value"@en ; + owl:sameAs oboe:MeasurementType ; + skos:altLabel "basis_of_value"@en ; + skos:exactMatch oboe:MeasurementType ; + skos:inScheme ; + skos:prefLabel "basis of value"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The species-level taxon name match for an original name. This column is assigned `na` for taxon name that are at a broader taxonomic_resolution."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000672 ; + rdf:datatype ; + rdfs:label "binomial"@en ; + skos:altLabel "binomial"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:inScheme ; + skos:prefLabel "binomial"@en ; + skos:relatedMatch dwc:specificEpithet . + + + oboe:characteristicFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Date sample was taken, in the format `yyyy-mm-dd`, `yyyy-mm` or `yyyy`, depending on the resoluton specified. Alternatively an overall range for the study can be indicating, with the starting and ending sample date sepatated by a `/`, as in 2010-10/2011-03"@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "collection date"@en ; + owl:sameAs ets:eventDate ; + skos:altLabel "collection_date"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:exactMatch ets:eventDate ; + skos:inScheme ; + skos:prefLabel "collection date"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Additional notes about the scope of the trait or acceptable methods."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000254 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "comments"@en ; + owl:sameAs ets:comments, rdfs:comment ; + skos:altLabel "comments"@en ; + skos:exactMatch ets:comments, rdfs:comment ; + skos:inScheme ; + skos:prefLabel "comments"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The situation within which a trait measurement is made, which can help explain the measured trait value."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "context"@en ; + skos:altLabel "context"@en ; + skos:broader oboe:Entity ; + skos:inScheme ; + skos:prefLabel "context"@en . + + + oboe:characteristicFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "The contextual characteristic being recorded. If applicable, name should include units of measurement, e.g. `CO2 concentration (ppm)`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000255 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "context property"@en ; + owl:sameAs ; + skos:altLabel "context_property"@en ; + skos:broader oboe:Characteristic ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "context property"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The category of context property, with options being `plot`, `treatment`, `individual_context`, `temporal` and `method`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000254 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "context property category"@en ; + skos:altLabel "category"@en ; + skos:broader skos:scopeNote ; + skos:inScheme ; + skos:prefLabel "context property category"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Description of a specific context property value."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000628 ; + rdf:datatype ; + rdfs:label "context property value description"@en ; + skos:altLabel "description"@en ; + skos:broader dcterms:description ; + skos:inScheme ; + skos:prefLabel "context property value description"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Variable indicating which identifier column in the traits table contains the specified `link_vals`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000628 , , , , ; + rdf:datatype ; + rdfs:label "context propety link id"@en ; + skos:altLabel "link_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "context propety link id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Unique integer identifiers that link between identifier columns in the `traits` table and the contextual properties/values in the `contexts` table."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 , , , , ; + rdf:datatype ; + rdfs:label "context propety link vals"@en ; + skos:altLabel "link_vals"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "context propety link vals"@en . + + + oboe:measurementFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "The measured value of a context property."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "context property value"@en ; + skos:altLabel "value"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:inScheme ; + skos:prefLabel "context property value"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A person contributing to a dataset."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000628 ; + rdf:datatype ; + rdfs:label "contributor"@en ; + owl:sameAs dcterms:contributor ; + skos:altLabel "contributor"@en ; + skos:exactMatch dcterms:contributor ; + skos:inScheme ; + skos:prefLabel "contributor"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Person contributing to a dataset as a data collector."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000255 , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 , , ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "data collectors"@en ; + owl:sameAs gdmt:DataCollector ; + skos:altLabel "data_collectors"@en ; + skos:broader dcterms:contributor ; + skos:exactMatch gdmt:DataCollector ; + skos:inScheme ; + skos:prefLabel "data collectors"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "13 relational tables and lists containing all data about a dataset."@en ; + SIO:SIO_000602 SIO:SIO_000750 ; + SIO:SIO_000673 ; + rdfs:label "dataset"@en ; + owl:sameAs oboe:ObservationCollection ; + skos:altLabel "dataset"@en ; + skos:exactMatch oboe:ObservationCollection ; + skos:inScheme ; + skos:prefLabel "dataset"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Database team member(s) who contacted the data collectors and added the study to the database repository."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "dataset curators"@en ; + owl:sameAs gdmt:DataCurator ; + skos:altLabel "dataset_curators"@en ; + skos:broader dcterms:contributor ; + skos:exactMatch gdmt:DataCurator ; + skos:inScheme ; + skos:prefLabel "dataset curators"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Primary identifier for each study contributed to AusTraits, most often these are scientific papers, books, or online resources. By default this should be the name of the first author and year of publication, e.g. `Falster_2005`."@en ; + dwcattributes:organizedInClass , , , , , , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdfs:label "dataset id"@en ; + skos:altLabel "dataset_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "dataset id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A short description, generally ranging from 1-3 sentences that clearly indicates the trait’s scope."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000254 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "description"@en ; + owl:sameAs dcterms:description, ets:traitDescription ; + skos:altLabel "description"@en ; + skos:exactMatch dcterms:description, ets:traitDescription ; + skos:inScheme ; + skos:prefLabel "description"@en . + + + oboe:characteristicFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "The elevation above mean sea level in meters."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "elevation (m)"@en ; + owl:sameAs dwc:verbatimElevation ; + skos:altLabel "elevation"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:exactMatch dwc:verbatimElevation ; + skos:inScheme ; + skos:prefLabel "elevation (m)"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "An entity is an object (e.g., a tree, a community, an ecological process). Entities constitute the foci of observations, i.e., every observation is of exactly one entity."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "entity"@en ; + owl:sameAs oboe:Entity ; + skos:altLabel "entity"@en ; + skos:exactMatch oboe:Entity ; + skos:inScheme ; + skos:prefLabel "entity"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier indicating specific contextual properties of an individual, possibly including the individual's sex or caste (for social insects)."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "entity context id"@en ; + skos:altLabel "entity_context_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "entity context id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A context characteristic indicating stratified variation across individuals or populations might affect the trait values measured."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "entity context property"@en ; + owl:sameAs ; + skos:altLabel "entity_context_property"@en ; + skos:broader oboe:Characteristic ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "entity context property"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A categorical variable specifying the entity corresponding to the trait values recorded."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "entity type"@en ; + skos:altLabel "entity_type"@en ; + skos:inScheme ; + skos:prefLabel "entity type"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Statement about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "establishment means"@en ; + owl:sameAs dwc:establishmentMeans ; + skos:altLabel "establishment_means"@en ; + skos:exactMatch dwc:establishmentMeans ; + skos:inScheme ; + skos:prefLabel "establishment means"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Family of the taxon."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000672 ; + rdf:datatype ; + rdfs:label "family"@en ; + owl:sameAs dwc:family ; + skos:altLabel "family"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:exactMatch dwc:family ; + skos:inScheme ; + skos:prefLabel "family"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Genus of the taxon without authorship."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000672 ; + rdf:datatype ; + rdfs:label "genus"@en ; + owl:sameAs dwc:genus ; + skos:altLabel "genus"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:exactMatch dwc:genus ; + skos:inScheme ; + skos:prefLabel "genus"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Given names of the data collector."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "given name"@en ; + owl:sameAs obo:IAO_0020016 ; + skos:altLabel "given_name"@en ; + skos:broader ; + skos:exactMatch obo:IAO_0020016 ; + skos:inScheme ; + skos:prefLabel "given name"@en . + + + oboe:hasContext ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "An individual living organism."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "individual"@en ; + owl:sameAs obo:OBI_0100026 ; + skos:altLabel "individual"@en ; + skos:broader oboe:Entity ; + skos:exactMatch obo:OBI_0100026 ; + skos:inScheme ; + skos:prefLabel "individual"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier for an individual, with individuals numbered sequentially within each dataset by taxon by population grouping. Most often each row of data represents an individual, but in some datasets trait data collected on a single individual is presented across multiple rows of data, such as if the same trait is measured using different methods or the same individual is measured repeatedly across time."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "individual id"@en ; + skos:altLabel "individual_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "individual id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A concise English label for the trait."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000628 ; + rdf:datatype ; + rdfs:label "label"@en ; + owl:sameAs ets:trait, rdfs:label, skos:prefLabel ; + skos:altLabel "label"@en ; + skos:exactMatch ets:trait, rdfs:label, skos:prefLabel ; + skos:inScheme ; + skos:prefLabel "label"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Last name of the data collector."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "last name"@en ; + owl:sameAs obo:IAO_0020017 ; + skos:altLabel "last_name"@en ; + skos:broader ; + skos:exactMatch obo:IAO_0020017 ; + skos:inScheme ; + skos:prefLabel "last name"@en . + + + oboe:characteristicFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "latitude (deg)"@en ; + owl:sameAs dwc:decimalLatitude ; + skos:altLabel "latitude"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:exactMatch dwc:decimalLatitude ; + skos:inScheme ; + skos:prefLabel "latitude (deg)"@en . + + + oboe:characteristicFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A field to indicate the life stage or age class of the entity measured. Standard values are `adult`, `sapling`, `seedling` and `juvenile`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "life stage"@en ; + owl:sameAs dwc:lifeStage ; + skos:altLabel "life_stage"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:exactMatch dwc:lifeStage ; + skos:inScheme ; + skos:prefLabel "life stage"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A spatial region or named place."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + SIO:SIO_000673 ; + rdfs:label "location"@en ; + owl:sameAs dcterms:location ; + skos:altLabel "location"@en ; + skos:broader oboe:Entity ; + skos:exactMatch dcterms:location ; + skos:inScheme ; + skos:prefLabel "location"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier for a location, with locations numbered sequentially within a dataset. The identifier links to specific information in the location table."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "location id"@en ; + skos:altLabel "location_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "location id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The location name used by the data contributor or a generic location name designated by AusTraits when one is not provided."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "location name"@en ; + skos:altLabel "location_name"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:inScheme ; + skos:prefLabel "location name"@en . + + + oboe:characteristicFor ; + oboe:hasValue ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "The location characteristic being recorded. The name should include units of measurement, e.g. `MAT (C)`. Ideally we have at least the following variables for each location, `longitude (deg)`, `latitude (deg)`, `description`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "location property"@en ; + skos:altLabel "location_property"@en ; + skos:broader oboe:Characteristic ; + skos:inScheme ; + skos:prefLabel "location property"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The measured value of a location property."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "location property value"@en ; + skos:altLabel "value"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:inScheme ; + skos:prefLabel "location property value"@en . + + + oboe:characteristicFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "longitude (deg)"@en ; + owl:sameAs dwc:decimalLongitude ; + skos:altLabel "longitude"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:exactMatch dwc:decimalLongitude ; + skos:inScheme ; + skos:prefLabel "longitude (deg)"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A measurement is an assertion that a characteristic of an entity had a particular value with respect to an observation event."@en ; + SIO:SIO_000602 SIO:SIO_001187 ; + rdfs:label "measurement"@en ; + owl:sameAs oboe:Measurement ; + skos:altLabel "measurement"@en ; + skos:exactMatch oboe:Measurement ; + skos:inScheme ; + skos:prefLabel "measurement"@en . + + + oboe:measurementFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A measurement made on an entity context property."@en ; + SIO:SIO_000602 SIO:SIO_001187 ; + SIO:SIO_000673 ; + rdfs:label "measurement of entity context property"@en ; + skos:altLabel "measurement_of_entity_context_property"@en ; + skos:broader oboe:Measurement ; + skos:inScheme ; + skos:prefLabel "measurement of entity context property"@en . + + + oboe:hasValue ; + oboe:measurementFor , ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A measurement made on a location property."@en ; + SIO:SIO_000602 SIO:SIO_001187 ; + rdfs:label "measurement of location property"@en ; + skos:altLabel "measurement_of_location_property"@en ; + skos:broader oboe:Measurement ; + skos:inScheme ; + skos:prefLabel "measurement of location property"@en . + + + oboe:measurementFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A measurement made on a plot context property."@en ; + SIO:SIO_000602 SIO:SIO_001187 ; + SIO:SIO_000673 ; + rdfs:label "measurement of plot context property"@en ; + skos:altLabel "measurement_of_plot_context_property"@en ; + skos:broader oboe:Measurement ; + skos:inScheme ; + skos:prefLabel "measurement of plot context property"@en . + + + oboe:measurementFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A measurement made on a temporal context property."@en ; + SIO:SIO_000602 SIO:SIO_001187 ; + SIO:SIO_000673 ; + rdfs:label "measurement of temporal context property"@en ; + skos:altLabel "measurement_of_temporal_context_property"@en ; + skos:broader oboe:Measurement ; + skos:inScheme ; + skos:prefLabel "measurement of temporal context property"@en . + + + oboe:hasValue ; + oboe:measurementFor ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A measurement made on a treatment context property."@en ; + SIO:SIO_000602 SIO:SIO_001187 ; + SIO:SIO_000673 ; + rdfs:label "measurement of treatment context property"@en ; + skos:altLabel "measurement_of_treatment_context_property"@en ; + skos:broader oboe:Measurement ; + skos:inScheme ; + skos:prefLabel "measurement of treatment context property"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Brief comments or notes accompanying the trait measurement."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "measurement remarks"@en ; + skos:altLabel "measurement_remarks"@en ; + skos:broader rdfs:comment ; + skos:inScheme ; + skos:prefLabel "measurement remarks"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A compment of a trait measurement protocol that is changed between individual trait measurements and might cause the measured trait values of individuals or populations to change."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "method context"@en ; + skos:altLabel "method_context"@en ; + skos:broader oboe:Entity, ; + skos:inScheme ; + skos:prefLabel "method context"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier indicating a trait is measured multiple times on the same entity, with different methods used for each entry. This field is only used if a single trait is measured using multiple methods within the same dataset. The identifier links to specific information in the context table."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "method context id"@en ; + skos:altLabel "method_context_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "method context id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A context characteristic indicating stratified variation in the protocol used to measure traits might affect the trait values measured."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "method context property"@en ; + owl:sameAs ; + skos:altLabel "method_context_property"@en ; + skos:broader oboe:Characteristic ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "method context property"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier to distinguish between multiple sets of methods used to measure a single trait within the same dataset. The identifier links to specific information in the methods table."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "method id"@en ; + skos:altLabel "method_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "method id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A 1-2 sentence description of the purpose of the study."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000628 ; + rdf:datatype ; + rdfs:label "dataset description"@en ; + owl:sameAs ets:datasetDescription ; + skos:altLabel "description"@en ; + skos:broader dcterms:description ; + skos:exactMatch ets:datasetDescription ; + skos:inScheme ; + skos:prefLabel "dataset description"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A textual description of the methods used to collect the trait data. Whenever available, methods are taken near-verbatim from the referenced source. Methods can include descriptions such as 'measured on botanical collections', 'data from the literature', or a detailed description of the field or lab methods used to collect the data."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "methods"@en ; + skos:altLabel "methods"@en ; + skos:broader oboe:Protocol ; + skos:closeMatch oboe:Protocol ; + skos:inScheme ; + skos:prefLabel "methods"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "An Observation is a collection of measurements made at a single point in time. In traits.build it is the subset of rows within the traits data that are made on the same entity and share the same observation_id."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:comment "An observation is an assertion that an entity (e.g., biological organisms, geographic locations, or environmental features, among others) was observed by an observer. An observation primarily serves to group a set of measurements together into a single "observation event". Observations are often made within a broader context. The context of an observation is given by other observations, implying that an observed entity (and specifically each corresponding measurement) contextualizes another observed entity (and its corresponding measurements). For example, an observation associated with a location may serve as context for an observation associated with an organism. In this case, the observed characteristic values of the location (such as humidity) are assumed constant for the corresponding measurements of the organism."@en ; + rdfs:label "observation"@en ; + owl:sameAs oboe:Observation ; + skos:altLabel "observation"@en ; + skos:exactMatch oboe:Observation ; + skos:inScheme ; + skos:prefLabel "observation"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integral identifier for the observation, where an observation is all measurements made on an individual at a single point in time. It is important for joining traits coming from the same `observation_id`. Within each dataset, observation_id's are unique combinations of `taxon_name`, `population_id`, `individual_id`, and `temporal_context_id`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdfs:label "observation id"@en ; + skos:altLabel "observation_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "observation id"@en . + + + oboe:characteristicFor ; + oboe:hasMeasurement ; + oboe:ofEntity , , ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation where entity is a category of context indicating repeat observations have been made on an individual, population or species-level entity across time which might affect the entity's measured trait values."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observation of entity context"@en ; + skos:altLabel "observation_of_entity_context"@en ; + skos:broader oboe:Observation ; + skos:inScheme ; + skos:prefLabel "observation of entity context"@en . + + + oboe:hasMeasurement ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation of location properties at a single location."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observation of location"@en ; + skos:altLabel "observation_of_location"@en ; + skos:broader oboe:Observation ; + skos:inScheme ; + skos:prefLabel "observation of location"@en . + + + oboe:characteristicFor ; + oboe:hasMeasurement ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation where entity is a category of context indicating variation across plots at a single location might affect the trait values measured on individual or population-level entities."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observation of plot context"@en ; + skos:altLabel "observation_of_plot_context"@en ; + skos:broader oboe:Observation ; + skos:inScheme ; + skos:prefLabel "observation of plot context"@en . + + + oboe:characteristicFor ; + oboe:hasMeasurement ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation where entity is a category of context indicating repeat observations have been made on a plot, which might affect the trait values measured on individual or population-level entities."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:comment "Examples of temporal contexts are `sampling season`, `sampling time of day`, and sequential `observation numbers` without any linked categorical description."@en ; + rdfs:label "observation of temporal context"@en ; + skos:altLabel "observation_of_temporal_context"@en ; + skos:broader oboe:Observation ; + skos:inScheme ; + skos:prefLabel "observation of temporal context"@en . + + + oboe:characteristicFor ; + oboe:hasMeasurement ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation where entity is a context indicating experimental manipulations that might affect the trait values measured on an individual, population or species-level entities."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:comment "Examples include growing temperature, growing CO2 concentrations, and nutrient amendments."@en ; + rdfs:label "observation of a treatment context"@en ; + skos:altLabel "observation_of_treatment_context"@en ; + skos:broader oboe:Observation ; + skos:inScheme ; + skos:prefLabel "observation of a treatment context"@en . + + + oboe:hasMeasurement , ; + oboe:ofEntity , , ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation collection of location properties and organismal traits at a single location."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observations at location"@en ; + skos:altLabel "observations_at_location"@en ; + skos:broader oboe:ObservationCollection ; + skos:inScheme ; + skos:prefLabel "observations at location"@en . + + + oboe:hasMeasurement , , , , , ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation collection encompassing all observations that comprise a dataset."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observations from dataset"@en ; + skos:altLabel "observations_from_dataset"@en ; + skos:broader oboe:ObservationCollection ; + skos:inScheme ; + skos:prefLabel "observations from dataset"@en . + + + oboe:hasMeasurement , , , , , ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation collection encompassing all observations for a single published or unpublished source."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observations from source"@en ; + skos:altLabel "observations_from_source"@en ; + skos:broader oboe:ObservationCollection ; + skos:inScheme ; + skos:prefLabel "observations from source"@en . + + + oboe:hasMeasurement ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation collection encompassing all observations on a single individual."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observations of individual"@en ; + skos:altLabel "observations_of_individual"@en ; + skos:broader oboe:ObservationCollection ; + skos:inScheme ; + skos:prefLabel "observations of individual"@en . + + + oboe:hasMeasurement ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation collection encompassing all observations on a single population."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:label "observations of population"@en ; + skos:altLabel "observations_of_population"@en ; + skos:broader oboe:ObservationCollection ; + skos:inScheme ; + skos:prefLabel "observations of population"@en . + + + oboe:hasMeasurement ; + oboe:ofEntity ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "Observation collection encompassing all observations on a single taxon within a single dataset."@en ; + SIO:SIO_000602 SIO:SIO_000754 ; + SIO:SIO_000673 ; + rdfs:comment "An observation collection is a container for a set of observations."@en ; + rdfs:label "observations of taxon"@en ; + skos:altLabel "observations_of_taxon"@en ; + skos:broader oboe:ObservationCollection ; + skos:inScheme ; + skos:prefLabel "observations of taxon"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Name given to taxon in the original data supplied by the authors."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "original taxon name"@en ; + skos:altLabel "original_name"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:inScheme ; + skos:prefLabel "original taxon name"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A subdivision of a location, designated because some properties differ across plots within a location, which might cause differences in measured trait values between plots."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "plot context"@en ; + skos:altLabel "plot"@en ; + skos:broader oboe:Entity, ; + skos:inScheme ; + skos:prefLabel "plot context"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier for a plot, where a plot is a distinct collection of organisms within a single geographic location, such as plants growing on different aspects or blocks in an experiment. The identifier links to specific information in the context table."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "plot context id"@en ; + skos:altLabel "plot_context_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "plot context id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A context characteristic indicating stratified variation within a location that might affect the trait values measured on an individual or population-level entity."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "plot context property"@en ; + owl:sameAs ; + skos:altLabel "plot_context_property"@en ; + skos:broader oboe:Characteristic ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "plot context property"@en . + + + oboe:hasContext ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A collection of organisms, all of the same species, that live in the same place."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "population"@en ; + owl:sameAs obo:PCO_0000001 ; + skos:altLabel "population"@en ; + skos:broader oboe:Entity ; + skos:exactMatch obo:PCO_0000001 ; + skos:inScheme ; + skos:prefLabel "population"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier for a population, where a population is defined as individuals growing in the same location (location_id /location_name) and plot (plot_context_id, a context category) and being subjected to the same treatment (treatment_context_id, a context category)."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "population id"@en ; + skos:altLabel "population_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "population id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier for repeat measurements of a trait that comprise a single observation, such as a response curve."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 , ; + rdf:datatype ; + rdfs:label "repeat measurements id"@en ; + skos:altLabel "repeat_measurements_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "repeat measurements id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Number of replicate measurements that comprise a recorded trait measurement. A numeric value (or range) is ideal and appropriate if the value type is a `mean`, `median`, `min` or  `max`. For these value types, if replication is unknown the entry should be `unknown`. If the value type is `raw_value` the replicate value should be 1. If the trait is categorical or the value indicates a measurement for an entire species (or other taxon) replicate value should be `.na`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "replicates"@en ; + owl:sameAs ets:individualCount ; + skos:altLabel "replicates"@en ; + skos:exactMatch ets:individualCount ; + skos:inScheme ; + skos:prefLabel "replicates"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "When available, this information is lifted verbatim from a published manuscript. For preserved specimens, this field ideally indicates which records were 'sampled' to measure a specific trait."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000628 ; + rdf:datatype ; + rdfs:label "dataset sampling strategy"@en ; + owl:sameAs dwc:samplingProtocol ; + skos:altLabel "sampling_strategy"@en ; + skos:exactMatch dwc:samplingProtocol ; + skos:inScheme ; + skos:prefLabel "dataset sampling strategy"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The full scientific name, with authorship and date information if known."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "scientific name"@en ; + owl:sameAs dwc:scientificName ; + skos:altLabel "scientific_name"@en ; + skos:exactMatch dwc:scientificName ; + skos:inScheme ; + skos:prefLabel "scientific name"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "scientific name id"@en ; + owl:sameAs dwc:scientificNameID ; + skos:altLabel "scientific_name_id"@en ; + skos:broader ; + skos:exactMatch dwc:scientificNameID ; + skos:inScheme ; + skos:prefLabel "scientific name id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "For datasets that are compilations, an identifier for the original data source."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "source id"@en ; + skos:altLabel "source_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "source id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Citations for the original dataset_id in sources, for compilationse. This detail is generated from the original source in the metadata."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + gdmt:Cites ; + rdf:datatype ; + rdfs:label "source original dataset citation"@en ; + skos:altLabel "source_original_dataset_citation"@en ; + skos:broader dcterms:bibliographicCitation ; + skos:inScheme ; + skos:prefLabel "source original dataset citation"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Citation key for the original dataset_id in sources, for compilations. The key is typically formatted as `Surname_year`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "source original dataset key"@en ; + owl:sameAs ; + skos:altLabel "source_original_dataset_key"@en ; + skos:broader ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "source original dataset key"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Citation for the primary source. This detail is generated from the primary source in the metadata."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + gdmt:Cites ; + rdf:datatype ; + rdfs:label "source primary citation"@en ; + skos:altLabel "source_primary_citation"@en ; + skos:broader dcterms:bibliographicCitation ; + skos:inScheme ; + skos:prefLabel "source primary citation"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Citation key for the primary source in `sources`. The key is typically formatted as `Surname_year`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "source primary key"@en ; + owl:sameAs ; + skos:altLabel "source_primary_key"@en ; + skos:broader ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "source primary key"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Citations for the secondary source. This detail is generated from the secondary source in the metadata."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + gdmt:Cites ; + rdf:datatype ; + rdfs:label "source secondary citation"@en ; + skos:altLabel "source_secondary_citation"@en ; + skos:broader dcterms:bibliographicCitation ; + skos:inScheme ; + skos:prefLabel "source secondary citation"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Citation key for the secondary source in `sources`. The key is typically formatted as `Surname_year`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "source secondary key"@en ; + skos:altLabel "source_secondary_key"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "source secondary key"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A circumscribed set of organisms."@en, "A group of organisms assumed to form a homogeneous unit with regard to associated trait measurements."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000223 , ; + SIO:SIO_000602 SIO:SIO_000756, SIO:SIO_000757 ; + SIO:SIO_000671 , , , , ; + SIO:SIO_000673 , , , ; + rdf:datatype ; + rdfs:label "taxon"@en ; + owl:sameAs dwc:Taxon ; + skos:altLabel "taxon"@en ; + skos:broader oboe:Characteristic, oboe:Entity ; + skos:exactMatch dwc:Taxon ; + skos:inScheme ; + skos:prefLabel "taxon"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Known distribution of the taxon, by Australian state."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "taxon distribution"@en ; + skos:altLabel "taxon_distribution"@en ; + skos:inScheme ; + skos:prefLabel "taxon distribution"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "An identifier for the set of taxon information (data associated with the taxon class). May be a global unique identifier or an identifier specific to the data set. Must be resolvable within this dataset."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "taxon id"@en ; + owl:sameAs dwc:taxonID ; + skos:altLabel "taxon_id"@en ; + skos:broader ; + skos:exactMatch dwc:taxonID ; + skos:inScheme ; + skos:prefLabel "taxon id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Scientific name of the taxon on which traits were sampled, without authorship. When possible, this is the currently accepted (botanical) or valid (zoological) scientific name, but might also be a higher taxonomic level."@en ; + dwcattributes:organizedInClass , , ; + SIO:SIO_000223 , , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000641 , ; + SIO:SIO_000673 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "taxon name"@en ; + skos:altLabel "taxon_name"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:closeMatch dwc:acceptedNameUsage ; + skos:inScheme ; + skos:prefLabel "taxon name"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The taxonomic rank of the most specific name in the scientific name."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:comment "This is to clarify cases where information is not given on a species level."@en ; + rdfs:label "taxon rank"@en ; + owl:sameAs dwc:taxonRank ; + skos:altLabel "taxon_rank"@en ; + skos:exactMatch dwc:taxonRank ; + skos:inScheme ; + skos:prefLabel "taxon rank"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Name of the taxonomy (tree) that contains this concept. ie. APC, AusMoss etc."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "taxonomic dataset"@en ; + owl:sameAs dwc:nomenclaturalCode ; + skos:altLabel "taxonomic_dataset"@en ; + skos:exactMatch dwc:nomenclaturalCode ; + skos:inScheme ; + skos:prefLabel "taxonomic dataset"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The rank of the most specific taxon name (or scientific name) to which a submitted orignal name resolves."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "taxonomic resolution"@en ; + skos:altLabel "taxonomic_resolution"@en ; + skos:inScheme ; + skos:prefLabel "taxonomic resolution"@en ; + skos:relatedMatch dwc:taxonRank . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The status of the use of the scientificName as a label for the taxon in regard to the 'accepted (or valid) taxonomy'. The assigned taxonomic status must be linked to a specific taxonomic reference that defines the concept."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "taxonomic status"@en ; + owl:sameAs dwc:taxonomicStatus ; + skos:altLabel "taxonomic_status"@en ; + skos:exactMatch dwc:taxonomicStatus ; + skos:inScheme ; + skos:prefLabel "taxonomic status"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A situation or process that varies across time and might cause the measured trait values of individuals or populations to change across time."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "temporal context"@en ; + skos:altLabel "temporal_context"@en ; + skos:broader oboe:Entity, ; + skos:inScheme ; + skos:prefLabel "temporal context"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier assigned where repeat observations are made on the same individual (or population, or taxon) across time. The identifier links to specific information in the context table."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "temporal context id"@en ; + skos:altLabel "temporal_context_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "temporal context id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A context characteristic indicating stratified variation across time might affect the trait values measured."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "temporal context property"@en ; + owl:sameAs ; + skos:altLabel "temporal_context_property"@en ; + skos:broader oboe:Characteristic ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "temporal context property"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A collection of trait values pertaining to a distinct characteristic of a specific part of an organism (cell, tissue, organ, or whole organism)."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000223 , , , , ; + SIO:SIO_000255 , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + rdf:datatype ; + rdfs:label "trait concept"@en ; + owl:sameAs oboe:Standard ; + skos:altLabel "trait"@en ; + skos:exactMatch oboe:Standard ; + skos:inScheme ; + skos:prefLabel "trait concept"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "trait identifier"@en ; + owl:sameAs dcterms:identifier, ets:traitID ; + skos:altLabel "trait_concept_URI"@en ; + skos:exactMatch dcterms:identifier, ets:traitID ; + skos:inScheme ; + skos:prefLabel "trait identifier"@en . + + + oboe:hasValue ; + oboe:measurementFor , , , , , , ; + dcterms:created "01 February 2024"^^ ; + dcterms:description "A measurement made on a trait."@en ; + SIO:SIO_000602 SIO:SIO_001187 ; + rdfs:label "trait measurement"@en ; + skos:altLabel "trait_measurement"@en ; + skos:broader oboe:Measurement ; + skos:inScheme ; + skos:prefLabel "trait measurement"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Name of the trait sampled. Allowable values specified in the table `definitions`."@en ; + dwcattributes:organizedInClass , , ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdfs:label "trait name"@en ; + owl:sameAs rdfs:label, skos:altLabel ; + skos:altLabel "trait_name"@en ; + skos:exactMatch rdfs:label, skos:altLabel ; + skos:inScheme ; + skos:prefLabel "trait name"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The measured value of a trait."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdfs:label "value"@en ; + owl:sameAs ets:traitValue ; + skos:altLabel "value"@en ; + skos:broader oboe:MeasuredValue, dwc:measurementValue ; + skos:exactMatch ets:traitValue ; + skos:inScheme ; + skos:prefLabel "value"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A description of the computing environment used to create this version of the dataset, including version number, git commit and R session_info."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_001330 ; + rdfs:label "build info"@en ; + skos:altLabel "build_info"@en ; + skos:inScheme ; + skos:prefLabel "build info"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table containing observations of contextual characteristics associated with information in `traits`. Cross referencing between the two dataframes is possible using combinations of the variables `dataset_id`, `link_id`, and `link_vals`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "contexts table"@en ; + skos:altLabel "contexts"@en ; + skos:inScheme ; + skos:prefLabel "contexts table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table of people contributing to each study."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "contributors table"@en ; + skos:altLabel "contributors"@en ; + skos:inScheme ; + skos:prefLabel "contributors table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A database of 13 relational tables build using the {traits.build} R-package for harmonizing trait data."@en ; + SIO:SIO_000602 SIO:SIO_000750 ; + rdfs:label "traits.build database"@en ; + skos:altLabel "traits.build_database"@en ; + skos:inScheme ; + skos:prefLabel "traits.build database"@en ; + skos:topConceptOf ""^^ . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A list containing trait concept descriptions used to build the database."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "definitions table"@en ; + owl:sameAs ets:Traitdata ; + skos:altLabel "definitions"@en ; + skos:exactMatch ets:Traitdata ; + skos:inScheme ; + skos:prefLabel "definitions table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table of data that did not pass quality tests and so were excluded from the master dataset. The structure is identical to that presented in the `traits` table, only with an extra column called `error` indicating why the record was excluded. Common reasons are missing_unit_conversions, missing_value, and unsupported_trait_value."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "excluded data table"@en ; + skos:altLabel "excluded_data"@en ; + skos:inScheme ; + skos:prefLabel "excluded data table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table containing observations of location/site characteristics associated with information in `traits`. Cross referencing between the two dataframes is possible using combinations of the variables `dataset_id`, `location_name`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:comment "Includes information about Location properties."@en ; + rdfs:label "locations table"@en ; + skos:altLabel "locations"@en ; + skos:inScheme ; + skos:prefLabel "locations table"@en ; + skos:relatedMatch ets:Occurrence . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A list containing database metadata."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_001330 ; + rdfs:label "metadata table"@en ; + skos:altLabel "metadata"@en ; + skos:closeMatch ets:Metadata ; + skos:inScheme ; + skos:prefLabel "metadata table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table containing details on methods with which data were collected, including time frame and source. Cross referencing with the `traits` table is possible using combinations of the variables `dataset_id`, `trait_name`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "methods table"@en ; + skos:altLabel "methods"@en ; + skos:inScheme ; + skos:prefLabel "methods table"@en ; + skos:relatedMatch ets:MeasurementOrFact . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A copy of the schema for all tables and terms. Information included here was used to process data and generate any documentation for the study."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_001330 ; + rdfs:label "schema"@en ; + skos:altLabel "schema"@en ; + skos:inScheme ; + skos:prefLabel "schema"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A list containing citation details for all database sources."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "sources table"@en ; + skos:altLabel "sources"@en ; + skos:inScheme ; + skos:prefLabel "sources table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table containing details on taxa associated with information in `traits`. Whenever possible, this information is sourced from curated taxon lists that include identifiers for each taxon. The information compiled in this table is released under a CC-BY3 license. Cross referencing between the two dataframes is possible using combinations of the variable `taxon_name`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "taxa table"@en ; + owl:sameAs ets:Taxon ; + skos:altLabel "taxa"@en ; + skos:exactMatch ets:Taxon ; + skos:inScheme ; + skos:prefLabel "taxa table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table of all taxonomic changes implemented in the construction of AusTraits. Changes are determined by comparing the originally submitted taxon name against the taxonomic names listed in the taxonomic reference files, best placed in a subfolder in the `config` folder . Cross referencing with the `traits` table is possible using combinations of the variables `dataset_id` and `taxon_name`."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:label "taxonomic updates table"@en ; + skos:altLabel "taxonomic_updates"@en ; + skos:inScheme ; + skos:prefLabel "taxonomic updates table"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A table containing measurements of traits."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000754 ; + rdfs:comment "Includes information that must be recorded at the Measurement or Observation level."@en ; + rdfs:label "traits table"@en ; + owl:sameAs ets:Traitdata ; + skos:altLabel "traits"@en ; + skos:exactMatch ets:Traitdata ; + skos:inScheme ; + skos:prefLabel "traits table"@en ; + skos:relatedMatch ets:MeasurementOrFact, ets:Occurrence . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "An experimental manipulation that subjects different individuals or populations to different conditions, which can lead to differences in measured trait values across treatments."@en ; + SIO:SIO_000602 SIO:SIO_000756 ; + rdfs:label "treatment context"@en ; + skos:altLabel "treatment"@en ; + skos:broader oboe:Entity, ; + skos:inScheme ; + skos:prefLabel "treatment context"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A unique integer identifier for a treatment, where a treatment is any experimental manipulation to an organism's growing/living conditions. The identifier links to specific information in the context table."@en ; + dwcattributes:organizedInClass , ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000674 ; + rdf:datatype ; + rdfs:label "treatment context id"@en ; + skos:altLabel "treatment_context_id"@en ; + skos:broader ; + skos:inScheme ; + skos:prefLabel "treatment context id"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A context characteristic indicating stratified treatments that might affect the trait values measured on an individual or population-level entity."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000673 ; + SIO:SIO_001096 ; + rdf:datatype ; + rdfs:label "treatment context property"@en ; + owl:sameAs ; + skos:altLabel "treatment_context_property"@en ; + skos:broader oboe:Characteristic ; + skos:exactMatch ; + skos:inScheme ; + skos:prefLabel "treatment context property"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The infraspecific taxon name match for an original name. This column is assigned `na` for taxon name that are at a broader taxonomic_resolution."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + SIO:SIO_000672 ; + rdf:datatype ; + rdfs:label "trinomial"@en ; + skos:altLabel "trinomial"@en ; + skos:broader rdfs:label, skos:prefLabel ; + skos:inScheme ; + skos:prefLabel "trinomial"@en ; + skos:relatedMatch dwc:infraspecificEpithet . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Type of trait, specifying if traits are categorical, numeric, or ordinal."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "type"@en ; + owl:sameAs ets:valueType ; + skos:altLabel "type"@en ; + skos:exactMatch ets:valueType ; + skos:inScheme ; + skos:prefLabel "type"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "Units of the sampled trait value after aligning with AusTraits standards."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdfs:label "unit"@en ; + owl:sameAs oboe:Unit, ets:traitUnit ; + skos:altLabel "unit"@en ; + skos:exactMatch oboe:Unit, ets:traitUnit ; + skos:inScheme ; + skos:prefLabel "unit"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "The preferred units for the trait, conforming to the Unified Code for Units of Measure (UCUM). There are often two entries for units, one that is a string and the second which links to a units of measurement axiom."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000224 ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "units"@en ; + owl:sameAs ets:expectedUnit ; + skos:altLabel "units"@en ; + skos:exactMatch ets:expectedUnit ; + skos:inScheme ; + skos:prefLabel "units"@en . + + + dcterms:created "01 February 2024"^^ ; + dcterms:description "A categorical variable describing the statistical nature of the trait value recorded."@en ; + dwcattributes:organizedInClass ; + SIO:SIO_000602 SIO:SIO_000757 ; + rdf:datatype ; + rdfs:label "value type"@en ; + owl:sameAs oboe:BaseCharacteristicQualifier ; + skos:altLabel "value_type"@en ; + skos:exactMatch oboe:BaseCharacteristicQualifier ; + skos:inScheme ; + skos:prefLabel "value type"@en . + diff --git a/ontology/output/ontology/traits.build.json b/ontology/output/ontology/traits.build.json index ed6ce911..362d3c53 100644 --- a/ontology/output/ontology/traits.build.json +++ b/ontology/output/ontology/traits.build.json @@ -7073,6 +7073,10 @@ "http://www.w3.org/2004/02/skos/core#prefLabel": { "@language": "en", "@value": "traits.build database" + }, + "http://www.w3.org/2004/02/skos/core#topConceptOf": { + "@type": "xsd:anyURI", + "@value": "" } }, { diff --git a/ontology/output/ontology/traits.build.nq b/ontology/output/ontology/traits.build.nq index acf59992..d8e65194 100644 --- a/ontology/output/ontology/traits.build.nq +++ b/ontology/output/ontology/traits.build.nq @@ -1986,4 +1986,4 @@ "Elizabeth Wenk" . "Sophie Yang" . "01 February 2024^^" . -https://w3id.org/traits.build#traits.build-database ""^^ . + ""^^ . diff --git a/ontology/output/ontology/traits.build.nt b/ontology/output/ontology/traits.build.nt index e3d66b29..16394c34 100644 --- a/ontology/output/ontology/traits.build.nt +++ b/ontology/output/ontology/traits.build.nt @@ -1986,4 +1986,4 @@ "Elizabeth Wenk" "Sophie Yang" "01 February 2024^^" -https://w3id.org/traits.build#traits.build-database ""^^ + ""^^ diff --git a/ontology/output/ontology/traits.build.ttl b/ontology/output/ontology/traits.build.ttl index 8528e698..faa2a581 100644 --- a/ontology/output/ontology/traits.build.ttl +++ b/ontology/output/ontology/traits.build.ttl @@ -2189,7 +2189,8 @@ skos:topConceptOf rdfs:label "traits.build database"@en ; skos:altLabel "traits.build_database"@en ; skos:inScheme ; - skos:prefLabel "traits.build database"@en . + skos:prefLabel "traits.build database"@en ; + skos:topConceptOf ""^^ . dcterms:created "01 February 2024"^^ ;