NAMESPACE

# Generated by roxygen2: do not edit by hand

export(markovProbability)
export(miloUmap)
export(projectPseudotimeToCell)
export(setupVdjPseudobulk)
export(vdjPseudobulk)
import(SingleCellExperiment)
import(miloR)
importFrom(BiocGenerics,type)
importFrom(MASS,ginv)
importFrom(Matrix,solve)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,summary)
importFrom(Matrix,t)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,"colData<-")
importFrom(bluster,makeKNNGraph)
importFrom(destiny,eigenvalues)
importFrom(destiny,eigenvectors)
importFrom(igraph,"E<-")
importFrom(igraph,E)
importFrom(igraph,as_adjacency_matrix)
importFrom(igraph,components)
importFrom(igraph,ends)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(methods,is)
importFrom(miloR,Milo)
importFrom(miloR,graph)
importFrom(miloR,nhoods)
importFrom(purrr,map)
importFrom(purrr,pmap)
importFrom(rlang,abort)
importFrom(spam,nearest.dist)
importFrom(stats,contrasts)
importFrom(stats,dist)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,qnorm)
importFrom(stats,sd)
importFrom(uwot,umap)