DESCRIPTION

Package: msDiaLogue
Title: Analysis + Visuals for Data Indep. Aquisition Mass Spectrometry Data
Version: 0.0.5
Authors@R: c(
    person("Shiying", "Xiao", email = "shiying.xiao@uconn.edu",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0002-8846-3258")),
    person("Timothy", "Moore", email = "timothy.e.moore@uconn.edu",
           role = "aut", comment = c(ORCID = "0000-0002-9576-0517")),
    person("Charles", "Watt", email = "clw21002work@uconn.edu", role = c("aut", "ctb")))
Maintainer: Shiying Xiao <shiying.xiao@uconn.edu>
Description: Offers simple tools to manipulate and investigate mass spectrometry (MS)
    data from data independent aquistion (DIA) experiments. The package is designed 
    to make effective statistical methods for DIA easy and accessible to all researchers.
    Specific tools include: filtration, transformation, normalization, 
    differential abundance estimation, and visualization. 
License: GPL-3 + file LICENSE
Depends: R (>= 4.1.0)
Imports:
    Rdpack,
    UpSetR,
    data.table,
    dplyr (>= 1.0.10),
    factoextra,
    ggplot2,
    ggrepel,
    ggvenn,
    glue,
    impute,
    limma,
    mice,
    multiUS,
    pcaMethods,
    pheatmap,
    psych,
    purrr,
    readxl,
    scales,
    seqinr,
    softImpute,
    tidyr (>= 1.3.0),
    tibble,
    tictoc,
    utils
Suggests:
    roxyglobals,
    testthat (>= 3.0.0)
Encoding: UTF-8
URL: https://github.com/uconn-scs/msDiaLogue
BugReports: https://github.com/uconn-scs/msDiaLogue/issues
Roxygen: list(markdown = TRUE, roclets = c("collate", "namespace", "rd",
    "roxyglobals::global_roclet"))
RoxygenNote: 7.3.2
Config/testthat/edition: 3
biocViews: impute, limma, pcaMethods
RdMacros: Rdpack
Config/roxyglobals/filename: globals.R
Config/roxyglobals/unique: FALSE