From 5ad56049e2fb83a67a3f80be2dbedc2c2e460eaa Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Micka=C3=ABl=20Canouil?= <8896044+mcanouil@users.noreply.github.com> Date: Tue, 11 May 2021 14:20:49 +0200 Subject: [PATCH] Update README.md --- README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index ea88f68..d602a91 100755 --- a/README.md +++ b/README.md @@ -5,11 +5,11 @@ -[![Lifecycle: retired](https://img.shields.io/badge/lifecycle-retired-red.svg)](https://github.com/omicsr/CARoT) +[![Lifecycle: retired](https://img.shields.io/badge/lifecycle-retired-red.svg)](https://github.com/umr1283/CARoT) [![GitHub -tag](https://img.shields.io/github/tag/omicsr/CARoT.svg?label=latest%20tag&include_prereleases)](https://github.com/omicsr/CARoT) +tag](https://img.shields.io/github/tag/umr1283/CARoT.svg?label=latest%20tag&include_prereleases)](https://github.com/umr1283/CARoT) [![R build -status](https://github.com/omicsr/CARoT/workflows/R-CMD-check/badge.svg)](https://github.com/omicsr/CARoT/actions) +status](https://github.com/umr1283/CARoT/workflows/R-CMD-check/badge.svg)](https://github.com/umr1283/CARoT/actions) ## Installation @@ -20,7 +20,7 @@ install.packages("CARoT") # Or the the development version from GitHub: # install.packages("remotes") -remotes::install_github("omicsr/CARoT") +remotes::install_github("umr1283/CARoT") ``` ``` r @@ -48,7 +48,7 @@ functions. Currently *CARoT* includes the following functions from other packages: - - [`rain`](https://github.com/mcanouil/rain) + - [`rain`](https://github.com/umr1283/rain) - `rain::estimate_ethnicity()` allows to format VCF files and compute the genomic components (and some figures) for ethnicity using [flashpca](https://github.com/gabraham/flashpca) software @@ -60,12 +60,12 @@ Currently *CARoT* includes the following functions from other packages: SNPS/genes and continuous or binary outcomes by including variant characteristic information and using (weighted) score statistics. - - [`dgapaq`](https://github.com/omicsr/dgapaq) + - [`dgapaq`](https://github.com/umr1283/dgapaq) - `dgapaq::qc_plink()` allows to compute quality-control of genotyping array (PLINK format) using a Rmarkdown template. - `dgapaq::qc_vcf()` allows to compute post-imputation quality-control report using a default Rmarkdown template. - - [`dmapaq`](https://github.com/omicsr/dmapaq) + - [`dmapaq`](https://github.com/umr1283/dmapaq) - `dmapaq::ggheatmap()` allows to compute heatmap with dendrogram on x-axis and y-axis using [ggplot2](https://ggplot2.tidyverse.org/). @@ -78,7 +78,7 @@ Currently *CARoT* includes the following functions from other packages: ## Getting help If you encounter a clear bug, please file a minimal reproducible example -on [github](https://github.com/omicsr/CARoT/issues). +on [github](https://github.com/umr1283/CARoT/issues). For questions and other discussion, please contact the package maintainer.