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We need the following APIs for the python io, TBD whether to write this directly in Rust:
# Read the vector/matrix csv filedefread_csv():
...
# Read the newick tree text file... non-binary file# should only contain newick tree stringdefread_newick():
...
# Writes the vector/matrix to a csv filedefwrite_csv():
...
# Writes newick string to a text filedefwrite_newick():
...
# Read the nexus file... non-binary file# NOTE: Stretch goaldefread_nexus():
# Use biopython to read the nexus file
...
We need the following APIs for the python io, TBD whether to write this directly in Rust:
Biopython resource: https://biopython.org/docs/latest/Tutorial/chapter_phylo.html
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