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feat: Add matrix module that would work with vector with branch lengths #52

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lsetiawan opened this issue Dec 11, 2024 · 0 comments
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lsetiawan commented Dec 11, 2024

Overview

We need to port over functionality to work with a matrix form of the phylo2vec vector. This form includes branch lengths. The current implementation can be found in the python code at https://github.com/Neclow/phylo2vec_dev/blob/main/phylo2vec/matrix/to_matrix.py. The current demo for this functionality can be found at https://github.com/Neclow/phylo2vec_dev/blob/main/demo_matrix.ipynb

Action Items

  • feat: Port over sample_matrix function to Rust
  • feat: Port over check_m function to Rust
  • feat: Port over to_newick function that takes matrix to Rust
  • feat: Port over to_matrix function to Rust
  • feat: Port over to_matrix_no_parents function to Rust
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