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Could not retrieve index file #201

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sanderslhc opened this issue Sep 4, 2023 · 0 comments
Open

Could not retrieve index file #201

sanderslhc opened this issue Sep 4, 2023 · 0 comments

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@sanderslhc
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Hi,
When I'm running "velocyto run -b /${path}/outs/filtered_feature_bc_matrix/barcodes.tsv.gz -o /${path}/outs -m cattle_rmsk.gtf /${path}/outs/possorted_genome_bam.bam genes.gtf"
There is something wrong happened like "Could not retrieve index file for '/usr/home/ironbank/researchdata/gtex/cattle_scdata/count/LJ/LJ1/outs/cellsorted_possorted_genome_bam.bam'". What should I do to solve this problem.
Thank you

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