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Migrate Biobox components #24

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sainirmayi opened this issue Oct 15, 2024 · 0 comments
Open
12 of 15 tasks

Migrate Biobox components #24

sainirmayi opened this issue Oct 15, 2024 · 0 comments
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sainirmayi commented Oct 15, 2024 •
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The following following components should be replaced with Biobox modules:

  • fastqc
  • (Optional) falco as an alternative to fastqc
  • trimgalore
  • bbmap_bbsplit
  • sortmerna
  • fq_subsample
  • umi_tools/umi_tools_dedup
  • umi_tools/umi_tools_prepareforquant
  • rsem/rsem_calculate_expression
  • kallisto/kallisto_index
  • kallisto/kallisto_quant
  • bedtools/bedtools_genomecov
  • qualimap/qualimap_rnaseq
  • dupradar
  • rseqc
@sainirmayi sainirmayi self-assigned this Oct 15, 2024
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