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Setting --skip_deseq2_qc = false results in an error #31

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tverbeiren opened this issue Dec 3, 2024 · 1 comment
Open

Setting --skip_deseq2_qc = false results in an error #31

tverbeiren opened this issue Dec 3, 2024 · 1 comment
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@tverbeiren
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Command error:
  Error in loadNamespace(x) : there is no package called ‘bit64’
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted

The option is temporarilly disabled.

@tverbeiren tverbeiren added the bug Something isn't working label Dec 4, 2024
@DriesSchaumont
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This is a problem with viash: https://github.com/viash-io/viash/blob/259ab858677dd6f4fcf46b832a309d8ae155c2db/src/main/scala/io/viash/config/resources/RScript.scala#L59
It automatically assumes that the bit64 package is installed, which is not always the case.

@DriesSchaumont DriesSchaumont self-assigned this Dec 16, 2024
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