test.yml

name: Test

on:
  push:
    branches: [ main ]
  pull_request:

jobs:
  # phase 1
  list:
    name: List components to test
    runs-on: ubuntu-latest

    outputs:
      matrix: ${{ steps.ns_list_filter_nextflow.outputs.output_matrix }}
      cache_key: ${{ steps.cache.outputs.cache_key }}
      dest_paths: ${{ steps.cache.outputs.dest_paths }}

    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0
        submodules: 'recursive'

    - uses: viash-io/viash-actions/setup@v6

    - uses: viash-io/viash-actions/project/sync-and-cache@v6
      id: cache

    - id: ns_list
      uses: viash-io/viash-actions/ns-list@v6
      with:
        format: json
        runner: executable

    - id: ns_list_filter_changed
      uses: viash-io/viash-actions/project/detect-changed-components@v6
      with:
        input_file: "${{ steps.ns_list.outputs.output_file }}"

    - name: Filter out Nextflow scripts (testing currently not supported)
      id: ns_list_filter_nextflow
      run: |
        OUTPUT_MATRIX=$(echo '${{ steps.ns_list_filter_changed.outputs.output_matrix }}' | jq -c 'map(select(.main_script_type != "nextflow_script"))')
        echo "output_matrix=$OUTPUT_MATRIX" >> $GITHUB_OUTPUT

  # phase 2
  test:
    name: Test
    needs: list
    if: ${{ needs.list.outputs.matrix != '[]' && needs.list.outputs.matrix != '' }}
    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        component: ${{ fromJson(needs.list.outputs.matrix) }}

    steps:
    # Remove unnecessary files to free up space. Otherwise, we get 'no space left on device.'
    - name: Clear space
      uses: data-intuitive/reclaim-the-bytes@v2
    
    - name: Check out repository
      uses: actions/checkout@v4
      with:
        submodules: 'recursive'
        fetch-depth: 0
        
    - name: Install Viash
      uses: viash-io/viash-actions/setup@v6

    # use cache
    - name: Cache resources data
      if: ${{ needs.list.outputs.cache_key != '' }}
      uses: actions/cache/restore@v4
      timeout-minutes: 10
      with:
        path: ${{ needs.list.outputs.dest_paths }}
        key: ${{ needs.list.outputs.cache_key }}

    - name: Run test
      timeout-minutes: 30
      env:
        VIASH_TEMP: "${{ runner.temp }}/viash_test_temp"
      run: |
        viash test \
          "${{ matrix.component.config }}" \
          --cpus 2 \
          --memory "16gb"