DESCRIPTION

Package: PItools
Type: Package
Title: Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service
Version: 0.1.42
Author: Vitalii Kleshchevnikov
Maintainer: Vitalii Kleshchevnikov <vk7@sanger.ac.uk>
Authors@R: c(person("Vitalii", "Kleshchevnikov",, "vk7@sanger.ac.uk", role = c("aut", "cre")))
Description: Package contains high-level functions for retrieving molecular interaction data from most public databases using PSICQUIC service (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml) and manipulating that data. Useful features include: retrieve full interactome of a given species, retrieve all interactions between two taxonomy groups (taxonomy structure-aware search), query molecular interaction databases using MIQL, subset interaction data by list of protein/gene identifiers, interaction detection method, publication (PMIDs). Depends on PSICQUIC, data.table.
License: Apache License 2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Depends: BiocGenerics, Biostrings, data.table, ontologyIndex, R.utils, downloader, gsubfn, jsonlite
Imports: PSICQUIC
URL: https://vitkl.github.io/PItools/
BugReports: https://github.com/vitkl/PItools/issues