-
Notifications
You must be signed in to change notification settings - Fork 11
/
Copy pathNAMESPACE
94 lines (93 loc) · 2.61 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
# Generated by roxygen2: do not edit by hand
export(SES)
export(abbreviate_taxa_names)
export(add_metadata)
export(adonis_pairwise)
export(blast_to_wide)
export(bubble_plot)
export(check_tax_uniqueness)
export(dada_learn_errors_subset)
export(dada_to_fasta)
export(dfRowName)
export(dissimilarity_to_distance)
export(dissimilarity_to_distance_importance_plot)
export(dist2list)
export(eig_perc)
export(extract_in_parentheses)
export(get_max_taxonomic_rank)
export(leading_zero)
export(make_utax_taxonomy)
export(make_utax_taxonomy_batch)
export(metagenome_contributions)
export(mult_dissim)
export(mult_dist_average)
export(parse_amplicon_table)
export(parse_fastq_eestats2)
export(parse_funguild)
export(parse_silva_tax)
export(parse_silva_tax_batch)
export(parse_swarms)
export(parse_taxonomy_amptk)
export(parse_taxonomy_amptk_batch)
export(parse_uc)
export(phred_inverse)
export(phred_score)
export(phyloseq_add_max_tax_rank)
export(phyloseq_average)
export(phyloseq_coverage)
export(phyloseq_coverage_raref)
export(phyloseq_effort_div_rangeplot)
export(phyloseq_extract_non_shared_otus)
export(phyloseq_extract_shared_otus)
export(phyloseq_filter_prevalence)
export(phyloseq_filter_sample_wise_abund_trim)
export(phyloseq_filter_taxa_rel_abund)
export(phyloseq_filter_taxa_tot_fraction)
export(phyloseq_filter_top_taxa)
export(phyloseq_filter_top_taxa_range)
export(phyloseq_group_dissimilarity)
export(phyloseq_inext)
export(phyloseq_merge_samples)
export(phyloseq_mult_raref)
export(phyloseq_mult_raref_avg)
export(phyloseq_mult_raref_div)
export(phyloseq_ntaxa_by_tax)
export(phyloseq_num_shared_otus)
export(phyloseq_otu_appearance)
export(phyloseq_otu_occurrence)
export(phyloseq_phylo_div)
export(phyloseq_phylo_ses)
export(phyloseq_prevalence_plot)
export(phyloseq_randomize)
export(phyloseq_rename_with_tax)
export(phyloseq_replace_zero)
export(phyloseq_richness_filter)
export(phyloseq_rm_na_tax)
export(phyloseq_sep_pairwise)
export(phyloseq_sep_samp)
export(phyloseq_sep_tax)
export(phyloseq_sep_variable)
export(phyloseq_standardize_otu_abundance)
export(phyloseq_summary)
export(phyloseq_taxonomic_resolution)
export(phyloseq_to_MetaCommunity)
export(phyloseq_to_df)
export(phyloseq_transform_aldex_clr)
export(phyloseq_transform_css)
export(phyloseq_transform_rlog_blind)
export(phyloseq_transform_vst_blind)
export(physeq_transform_anderson_log)
export(predict_metagenomes)
export(prepare_breakaway)
export(prepare_inext)
export(prevalence)
export(raref_rtk)
export(read_m8)
export(shepard_plot)
export(some)
export(taxonomy_to_qiime)
export(uc_to_sumaclust)
import(data.table)
importFrom(Matrix,Matrix)
importFrom(Matrix,diag)
importFrom(Matrix,t)