Skip to content

Releases: wadpac/GGIR

Naranjito (2.8-0)

20 Sep 12:44
Compare
Choose a tag to compare
  • Documentation: New package vignette added for cut-points.
  • Documentation: New package vignette added for arguments
  • Documentation: GGIR function manual and parameter/argument vignette auto-integrate default values to avoid inconsistencies.
  • Documentation: Main vignette sections on cut-points and input argument shortened with reference to the new vignettes.
  • Documentation: Paragraph added on processing time.

Escara (2.7-7)

17 Sep 10:21
Compare
Choose a tag to compare
  • Part 1: Long time gaps in ActiGraph data or ad-hoc .csv data as a result of idle sleep mode are now dealt with at metric level rather than raw data level.
  • Part 1: Speed up to code by changing how GENEActiv data converted to matrix and by changing how rolling median is derived.
  • Part 1" Deprecate option to read raw data from in RData files, which was connected to the selectdaysfile functionality as deprecated in previous release.
  • Remove zenodo and .cff file to simplify package citation and avoid tracking by RSD (issue #636)
  • Part 1: Add extra arguments to modify zero-crossing count calculation.
  • Part 3: Adding Cole Kripke sleep detection algorithm.

Las Mellizas (2.7-6)

02 Sep 08:59
5a3402d
Compare
Choose a tag to compare
  • Part 1: Deprecated g.cwaread and internally replaced by GGIRread::readAxivity.
  • Part 1: Deprecated g.binread and internally replaced by GGIRread::readGenea.
  • Part 1: Deprecated resample and internally replaced by GGIRread::resample.
  • Part 1: Added temporary option to choose between using GENEAread or GGIRread::readGENEActiv for reading GENEActiv .bin files.
    \item Part 1 + 2: Deprecated selectdaysfile functionality.
  • Deprecated function g.getidfromheaderobject, and functionality merged with g.extractheadervars

Resina (2.7-5)

01 Sep 07:30
Compare
Choose a tag to compare

Small GitHub-only release in order to isolate the changes that will come with the next release.

In this release:

  • Part 1: AX6 gyroscope data correctly ignored in g.getmeta.

El Manzano (2.7-4)

17 Aug 15:43
Compare
Choose a tag to compare
  • Part 1: Arguments configtz and desiredtz now also used for .gt3x data.
  • Part 1: Temporary copy of read.gt3x code replaced by direct dependency on read.gt3x
  • Vignette: Cut-point documentation paragraph improved.
  • Part 1: Mismatches in the reading of ActiGraph csv files handled (mainly because of header = TRUE resulted in some acceleration values disregarded as they were considered a header in each iteration).
  • Part 1: Fixed issue #573 (code redundancy to impute time gaps in read.myacc.csv and g.imputeTimegaps)
  • Part 1: g.imputeTimegaps extended so that now it can handle time gaps at the begining, at the end of the file, and time gaps from one chunk to the next one.
  • Part 2: QC plot now with legend and minor updates to layout.
  • Part 4: Person level aggregation now takes place per filename instead of per ID, which should prevent that identical IDs in repeated recordings get aggregated into a single ling.
  • Part 4: ID matching between accelerometer file and sleep log improved by ignore spaces.

Novo Progresso (2.7-3)

26 Jul 14:12
Compare
Choose a tag to compare
  • Part 1: Add extra arguments to modify zero-crossing count calculation.
  • Part1: Added option to expand the last day of the recording to trigger analyses for that day, see argument expand_tail_max_hours in params_general.
  • Part 1: Add extraction of ID and serial number from Movisens data
  • Part 2: Corrected calendar date time stamps in daysummary report on last day of the recording.
  • Part 2: Further, improvement to activity diary functionality to warn user when date format is inconsistent.
  • Part 2: Missing values in activity diary are now skipped by which non-neighboring cells with valid data can define segments.
  • Part 3: Adding ColeKripke sleep detection algorithm.
  • Part 3: Improved handling of sleep that ends in the hour before noon on the last day of the recording.
  • Part 4: Fixing #592 concerning using a set time window as guider for the sleep analyses.
  • Part 4: Fixed issue #592 which caused GGIR to incorrectly warn used about using the set time window guider functionality correctly

Agua Dulce (2.7-2)

22 Jun 08:36
Compare
Choose a tag to compare
  • Part 4: Fixing timezone sensitivity for OSx in Pacific timezone for gloadlog function.
  • Inform user (onAttach) when local GGIR version is behind CRAN version.
  • Part 2: Enhancing activity diary functionality to warn user when date format is inconsistent and to treat cells with only a dot as missing values.
  • Part 1: Fixing issue #577 concerning use of temperature data in ad-hoc csv file format
  • Part 5: Fixing issue #582 affecting windows where a single fragment spans the entire window.

El Desconsolado (2.7-1)

30 May 09:06
Compare
Choose a tag to compare
  • Fixing bug #566 concerning decision to not parallel process being made too late
  • Part 4: Fixing timezone sensitivity for OSx in Pacific timezone for gloadlog function.

Caquingora

24 May 07:51
Compare
Choose a tag to compare
  • Renaming function g.shell.GGIR to GGIR and adding new function g.shell.GGIR as a wrapper function around GGIR function to preserve functionality.
  • Deprecating functionality to read GENEA bin files (not to be confused with GENEActiv), because dependency matlab is about to be archived.
    Once matlab is back online we will reinsert this functionality.
  • Cosinor analysis now accounts for DST (see vignette for details)

Loma Plata

20 May 09:10
Compare
Choose a tag to compare
  • Part 2: IVIS now able to handle missing data points
  • Part 2: IVIS option added to specify acceleration threshold when using IVIS.activity.metric=2
  • Part 2: Dependency added to ActCR to perform Cosinor and Extended cosinor analyses, see new argument cosinor.
  • General: If there is only 1 file to be processed then code skips the parallel processing .