napari-trackastra

A napari plugin for cell tracking with trackastra.

Installation

Please install napari as outlined here.
After that, install the latest version of this plugin from PyPI with:
```
pip install napari-trackastra
```

Notes:

For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main trackastra package.
On Windows currently only supported for Python 3.10.

Usage

trackastra expects a timeseries of raw images and corresponding segmentations masks as input.
We provide some demo data at File > Open Sample > trackastra.
Tracked cells can be directly saved to Cell Tracking Challenge format.
Results can be drag-and-dropped back into napari for inspection.