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Hello, I am using cd-hit-v4.8.1-2019-0228. The command -d command does not appear to change the length of the description in the resulting cluster file in cd-hit-est.
my command is:
'/cd-hit-est -i 16S_rRNA_all.fasta -o 16S_rRNA_all_c99.fasta -d 100 -c 0.99 -M 16000'
If I change the other commands, they work but it always produces the same default description length of 20 in the .clstr file. An example of which is below:
Hello, I am using cd-hit-v4.8.1-2019-0228. The command
-d
command does not appear to change the length of the description in the resulting cluster file in cd-hit-est.my command is:
./cd-hit-est -i 16S_rRNA_all.fasta -o 16S_rRNA_all_c99.fasta -c 0.99 -M 16000 -d 250
I have also tried
/cd-hit-est -i 16S_rRNA_all.fasta -o 16S_rRNA_all_c99.fasta -d 200 -c 0.99 -M 16000
and:
'/cd-hit-est -i 16S_rRNA_all.fasta -o 16S_rRNA_all_c99.fasta -d 100 -c 0.99 -M 16000'
If I change the other commands, they work but it always produces the same default description length of 20 in the .clstr file. An example of which is below:
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