From 56ad78f3a7656f5c3357f3923f21b4d3f3c40e78 Mon Sep 17 00:00:00 2001
From: Yichen Wang <wayichen@umich.edu>
Date: Wed, 27 Mar 2024 10:05:47 -0400
Subject: [PATCH] fix #308

---
 NEWS.md     | 2 +-
 R/util.R    | 2 +-
 README.md   | 4 ++--
 _config.yml | 1 -
 4 files changed, 4 insertions(+), 5 deletions(-)
 delete mode 100644 _config.yml

diff --git a/NEWS.md b/NEWS.md
index 5193f13e..7049700c 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -20,7 +20,7 @@
 - Fixed file access issue when checking package on CRAN
 - Updated installed data file `system.file("extdata/ctrl.h5", "extdata/stim.h5")` to be of standard 10X H5 format
 - Updated `quantileNorm()` automatic reference selection according to #297
-- Other minor fixes
+- Other minor fixes (including #308)
 
 ## rliger 2.0.0
 
diff --git a/R/util.R b/R/util.R
index 1c52aa5e..1dbbff3a 100644
--- a/R/util.R
+++ b/R/util.R
@@ -387,7 +387,7 @@ cli_or <- function(x) cli::cli_vec(x, list("vec-last" = " or "))
     call <- match.call(definition = sys.function(-1),
                        call = sys.call(-1), envir = parent.frame(2))
     callArgs <- rlang::call_args(call)
-    parentFuncName <- as.list(call)[[1]]
+    parentFuncName <- rlang::call_name(call)
     # This gives access to variable in the function operation environment
     p <- parent.frame()
     for (old in names(replace)) {
diff --git a/README.md b/README.md
index 8844057b..1f4a6db6 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
 <img src="https://github.com/welch-lab/liger/raw/newObj/inst/extdata/logo.png" width="120" style="display: inline;">
 
-<a href="https://github.com/welch-lab/liger/actions/workflows/r.yml"><img src="https://github.com/welch-lab/liger/actions/workflows/r.yml/badge.svg?branch=newObj" alt="R" style="display: inline;"></a>
-<a href="https://app.codecov.io/gh/mvfki/liger"><img src="https://codecov.io/gh/mvfki/liger/graph/badge.svg?token=77TTU4GY8" alt="codecov" style="display: inline;"></a>
+<a href="https://github.com/welch-lab/liger/actions/workflows/r.yml"><img src="https://github.com/welch-lab/liger/actions/workflows/r.yml/badge.svg?branch=master" alt="R" style="display: inline;"></a>
+<a href="https://app.codecov.io/gh/welch-lab/liger"><img src="https://codecov.io/gh/welch-lab/liger/graph/badge.svg?token=chxwVaVsGp" alt="codecov" style="display: inline;"></a>
 <a href="https://cran.r-project.org/package=rliger"><img src="https://cranlogs.r-pkg.org/badges/rliger" alt="cran" style="display: inline;"></a>
 
 # LIGER (Linked Inference of Genomic Experimental Relationships)
diff --git a/_config.yml b/_config.yml
deleted file mode 100644
index 2f7efbea..00000000
--- a/_config.yml
+++ /dev/null
@@ -1 +0,0 @@
-theme: jekyll-theme-minimal
\ No newline at end of file