From 7bc6e9921d12eeeb953bd64f17df318f6ad07ff9 Mon Sep 17 00:00:00 2001
From: Alex Hambley <33315205+alexhambley@users.noreply.github.com>
Date: Wed, 11 Sep 2024 12:01:43 +0100
Subject: [PATCH] Update pylint config to ignore specific directories

- Removed git ls-files
- Added tests, ro-crate-metadata, create_ro_crate.py, upload_crate.py to be ignored by pylint. Moved these to pylintrc
- create_ro_crate.py, upload_crate.py  are ignored due to rocrate package depending on older version of urllib3, and knowledge graph project depends on newer version.
---
 .github/workflows/lint-and-test.yaml | 2 +-
 .pylintrc                            | 7 ++++---
 __init__.py                          | 0
 3 files changed, 5 insertions(+), 4 deletions(-)
 create mode 100644 __init__.py

diff --git a/.github/workflows/lint-and-test.yaml b/.github/workflows/lint-and-test.yaml
index c0c3b72..ab1ae36 100644
--- a/.github/workflows/lint-and-test.yaml
+++ b/.github/workflows/lint-and-test.yaml
@@ -26,7 +26,7 @@ jobs:
         poetry install --all-extras -vv
     - name: Analysing the code with pylint
       run: |
-        poetry run pylint --errors-only $(git ls-files '*.py') --ignore=tests/SPARQL,ro-crate-metadata --ignore-patterns=workflowhub_graph/create_ro_crate.py
+        poetry run pylint -v --errors-only .
     - name: Testing the code with pytest
       run: |
         poetry run py.test tests --ignore=tests/SPARQL --ignore=ro-crate-metadata --ignore=workflowhub_graph/create_ro_crate.py
diff --git a/.pylintrc b/.pylintrc
index a39a42c..b5af4bb 100644
--- a/.pylintrc
+++ b/.pylintrc
@@ -36,7 +36,8 @@ fail-under = 10
 # from-stdin =
 
 # Files or directories to be skipped. They should be base names, not paths.
-ignore = ["CVS"]
+ignore = CVS, tests, ro-crate-metadata, create_ro_crate.py, upload_crate.py
+
 
 # Add files or directories matching the regular expressions patterns to the
 # ignore-list. The regex matches against paths and can be in Posix or Windows
@@ -47,7 +48,7 @@ ignore = ["CVS"]
 # Files or directories matching the regular expression patterns are skipped. The
 # regex matches against base names, not paths. The default value ignores Emacs
 # file locks
-ignore-patterns = ["^\\.#"]
+ignore-patterns = ^\\.#,
 
 # List of module names for which member attributes should not be checked and will
 # not be imported (useful for modules/projects where namespaces are manipulated
@@ -83,7 +84,7 @@ persistent = true
 
 # Minimum Python version to use for version dependent checks. Will default to the
 # version used to run pylint.
-py-version = 3.10
+py-version = 3.11
 
 # Discover python modules and packages in the file system subtree.
 # recursive =
diff --git a/__init__.py b/__init__.py
new file mode 100644
index 0000000..e69de29