How to solve this issue ? #285
Comments
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Please attache the full log. |
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@yumorishita |
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Please use batch_LiCSBAS.sh. The log file will be automatically generated. |
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@yumorishita |
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@yumorishita |
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Today , it did went smoothly but earlier when i was using g location as lat/lon i was clippin length to width 3000 and 46000 number as length was in negative it was causing an error. I input them as long/lat and it worked smoothly but length component i got was only 150. Later , I am getting an error in this step. You can display the derived time series and velocity: LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5 & error is [1]+ Exit 127 LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5 |
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Check your environment and I suggest you to run again this command And then run this command LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5 & |
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Still I am getting the same error. If possible can you show me your terminal code so I can see where i am getting wrong in following procedure, so I can also find the result. (miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL: No TS_GEOCml1clip/cum_filt.h5 found! |
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(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:~/LiCSBAS/056A_05855_131313$ bash batch_LiCSBAS.sh Start step: 01 LiCSBAS01_get_geotiff.py ver1.6.3 20201207 Y. Morishita Frame ID is 056A_05855_131313 056A_05855_131313.geo.E.tif already exist. Skip download. Download baselines 056A_05855_131313.geo.mli.tif already exist. Skip. Download geotiff of unw and cc Elapsed time: 00h 03m 24s LiCSBAS01_get_geotiff.py Successfully finished!! Output directory: /home/neeraj/LiCSBAS/056A_05855_131313/GEOC LiCSBAS02_ml_prep.py ver1.7.4 20201119 Y. Morishita Create E.geo Create N.geo Create U.geo Create slc.mli Create hgt Create unw and cc Copy baselines file Elapsed time: 00h 00m 02s LiCSBAS02_ml_prep.py Successfully finished!! Output directory: GEOCml1 LiCSBAS05op_clip_unw.py ver1.2.5 20210105 Y. Morishita Area to be clipped: Clip E.geo Clip unw and cc Elapsed time: 00h 00m 00s LiCSBAS05op_clip_unw.py Successfully finished!! Output directory: GEOCml1clip LiCSBAS11_check_unw.py ver1.3.3 20210402 Y. Morishita coh_thre : 0.05 Size : 151 x 201 Reading unw and cc data... 35/345 ifgs are discarded from further processing. |
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Instead of running batch file, can you run all steps manually! step_5 LiCSBAS11_check_unw.py -d GEOCclip/ For time series plotting: You may use the above commands and see the velocity map. |
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The three errors you showed are different. The first one was solved by |
ERROR: No GACOS/ dir exists! |
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I recommend using batch_LiCSBAS.sh. |
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With batch processing still I am unable to get proper results. I am getting this error while plotting. (miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL: |
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Is there any video available of this work , that will help me a lot in understanding it fully. |
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In batch processing i am getting error of No TS_GEOCclip/cum_filt.h5 found! I tried downgrading my matplotlib too but it is not happening and ending with this error note: This error originates from a subprocess, and is likely not a problem with pip. |
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Please upload the full log of the batch processing. |
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LiCSBAS01_get_geotiff.py ver1.6.3 20201207 Y. Morishita Frame ID is 056A_05855_131313 Download 056A_05855_131313.geo.E.tif Download baselines Searching latest epoch for mli... 20221214 found as latest. Download geotiff of unw and cc Download unw (4 parallel)... Download cc (4 parallel)... Elapsed time: 02h 24m 28s LiCSBAS01_get_geotiff.py Successfully finished!! Output directory: /home/neeraj/LiCSBAS/056A_05855_131313/GEOC LiCSBAS02_ml_prep.py ver1.7.4 20201119 Y. Morishita Create E.geo Create N.geo Create U.geo Create slc.mli Create hgt Create unw and cc Create slc.mli.par Create EQA.dem_par Copy baselines file Elapsed time: 00h 05m 57s LiCSBAS02_ml_prep.py Successfully finished!! Output directory: GEOCml1 LiCSBAS05op_clip_unw.py ver1.2.5 20210105 Y. Morishita Area to be clipped: Clip E.geo Clip unw and cc Elapsed time: 00h 01m 25s LiCSBAS05op_clip_unw.py Successfully finished!! Output directory: GEOCml1clip LiCSBAS11_check_unw.py ver1.3.3 20210402 Y. Morishita coh_thre : 0.05 Size : 151 x 201 Reading unw and cc data... 35/345 ifgs are discarded from further processing. |
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Please see #244 (comment). |
You need to add --get_gacos step_1 LiCSBAS01_get_geotiff.py -f 124D_04854_171313 -s 20160909 -e 20180508 --get_gacos |
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I used batch file and used LiCSBAS2 for processing. It went well but when i did plotting there is an errror after plotting. Why this error or is it normal ? /home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:456: DeprecationWarning: Also , in time series i didnt get any displacement value , what can be issue for this as in velocity displacement graph i can see changes in values.
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I think the messages are just warning and you can ignore them. |
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i am exporting these velocity displacement as tiff file but i am unable to process these in arcGIS, how to do that so i can correlate on basemap. |
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I cannot support the ArcGIS issue. Maybe your method of creating the GeoTIFF was incorrect. |
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It's getting tiff output , as file is getting saved in tiff format but can't export that to arcGIS as its not saving cropped area as tiff , its saving whole image as tiff file. |
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Please show the commands you ran. |
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No specific commands in terminal , just saving them as tiff file like this. |
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It is not GeoTIFF but a simple image tiff with no geographical information. |
you can use this command for tif file generation LiCSBAS_flt2geotiff.py -i TS_GEOCml1clip/results/vel.mskd -p TS_GEOCml1clip/info/EQA.dem_par |
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Tiff file has been extracted successfully. But I am getting a little bit of error in geolocation. Should I change the latitude and longitude and do processing once again. because I have taken a bigger area extent for clipping from 30.45 to 30.65 and 79.50 to 79.65 and my location lies at 30.55 and 79.56. As you can see in attached photo red square is my desired location and green in what i am getting through geoTIFF. Is tiff file on WGS 1984 44N ? |
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I tried another interferogram and it worked for that location. Thankyou so much for guiding me with this. |
Traceback (most recent call last):
File "/home/neeraj/LiCSBAS/bin/LiCSBAS05op_clip_unw.py", line 345, in
sys.exit(main())
^^^^^^
File "/home/neeraj/LiCSBAS/bin/LiCSBAS05op_clip_unw.py", line 259, in main
hgt = io_lib.read_img(os.path.join(out_dir, 'hgt'), length_c, width_c)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/neeraj/LiCSBAS/LiCSBAS_lib/LiCSBAS_io_lib.py", line 199, in read_img
data = np.fromfile(file, dtype=dtype).reshape((length, width))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: can only specify one unknown dimension
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