We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
The new version of picard is needed. There is a bug in the previous one when running MarkDuplicates with ASSUME_SORT_ORDER=queryname.
The text was updated successfully, but these errors were encountered:
I think that commit 951be46 fixes the issue. Works with both docker and singularity.
Docker:
docker pull zavolab/picard:2.20.2 docker run -d -t zavolab/picard:2.20.2 docker ps # find container id docker exec c6a9f1df4358 java -jar /usr/local/bin/picard.jar --help
Singularity:
singularity pull docker://zavolab/picard:2.20.2 singularity exec picard-2.20.2.simg java -jar /usr/local/bin/picard.jar --help
@mkatsanto Can you please try the MarkDuplicates with ASSUME_SORT_ORDER=queryname and let me know if it works as expected?
Sorry, something went wrong.
fgypas
No branches or pull requests
The new version of picard is needed. There is a bug in the previous one when running MarkDuplicates with ASSUME_SORT_ORDER=queryname.
The text was updated successfully, but these errors were encountered: