fix multiqc tests

AfshinLab · Nov 4, 2022 · c67d447 · c67d447
1 parent 029dc24
commit c67d447
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Showing 2 changed files with 8 additions and 8 deletions.
diff --git a/src/blr/multiqc_config.yaml b/src/blr/multiqc_config.yaml
@@ -107,16 +107,16 @@ sp:
   cutadapt:
     fn: "trimmed.fastq.log"
   whatshap/stats:
-    fn: "final.whatshap_stats.tsv"
+    fn: "*.whatshap_stats.tsv"
   whatshap/haplotag:
     fn: "*.haplotag.log"
   fastqc:
     fn_re: "trimmed.barcoded.[1|2].fastq.gz"
   hapcut2/phasing_stats:
-    fn: "final.phasing_stats.txt"
+    fn: "*.phasing_stats.txt"
   stats/sv_sizes:
-    fn: "final.sv_sizes.tsv"
+    fn: "*.sv_sizes.tsv"
   stats/molecule_stats:
-    fn: "final.molecule_stats.txt"
+    fn: "*.molecule_stats.txt"
   stats/barcode_stats:
-    fn: "final.barcode_stats.txt"
+    fn: "*.barcode_stats.txt"
diff --git a/tests/test_multiqc_blr.py b/tests/test_multiqc_blr.py
@@ -95,7 +95,7 @@ def test_stats_barcode_stats(tmpdir):
 
 
 def test_hapcut2(tmpdir):
-    copyfile(TESTDATA_HAPCUT2_PHASING_STATS, tmpdir / "example.txt")
+    copyfile(TESTDATA_HAPCUT2_PHASING_STATS, tmpdir / "example.phasing_stats.txt")
 
     subprocess.run(["multiqc", "-f", tmpdir, "-o", tmpdir, "-m", "hapcut2"])
 
@@ -107,7 +107,7 @@ def test_hapcut2(tmpdir):
 
 
 def test_hapcut2_with_auN(tmpdir):
-    copyfile(TESTDATA_HAPCUT2_PHASING_STATS_AUN, tmpdir / "example.txt")
+    copyfile(TESTDATA_HAPCUT2_PHASING_STATS_AUN, tmpdir / "example.phasing_stats.txt")
 
     subprocess.run(["multiqc", "-f", tmpdir, "-o", tmpdir, "-m", "hapcut2"])
 
@@ -119,7 +119,7 @@ def test_hapcut2_with_auN(tmpdir):
 
 
 def test_hapcut2_chroms(tmpdir):
-    copyfile(TESTDATA_HAPCUT2_PHASING_STATS_CHROM, tmpdir / "example.txt")
+    copyfile(TESTDATA_HAPCUT2_PHASING_STATS_CHROM, tmpdir / "example.phasing_stats.txt")
 
     subprocess.run(["multiqc", "-f", tmpdir, "-o", tmpdir, "-m", "hapcut2"])