add device and medecation refs to bundle

Aidbox · May 13, 2024 · 3b5d321 · 3b5d321
1 parent 1fecaca
commit 3b5d321
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Showing 3 changed files with 16 additions and 3 deletions.
diff --git a/ips_ig/README.MD b/ips_ig/README.MD
@@ -101,7 +101,7 @@ AIDBOX_FHIR_PACKAGES=hl7.fhir.r4.core#4.0.1:hl7.fhir.uv.ips#1.1.0
 AIDBOX_VALIDATE_BINDING_URL="https://r4.ontoserver.csiro.au/fhir/ValueSet/\$validate-code"
 ```
 
-Also, it is possible to deploy Aidbox with [Helm charts](https://github.com/Aidbox/helm-charts/tree/main). To do so, follow the steps outlined below:
+It is possible to deploy Aidbox with [Helm charts](https://github.com/Aidbox/helm-charts/tree/main). To do so, follow the steps outlined below:
 
 ### 1. Add aidbox helm repo
 

diff --git a/ips_ig/src/ips.ts b/ips_ig/src/ips.ts
@@ -479,9 +479,20 @@ export const getResourcesFromRefs = async (
       const performerRef = resource.performer ? getRefs(resource.performer) : [];
       const partOfRef = resource.partOf ? getRefs(resource.partOf) : [];
       const hasMemberRef = resource.hasMember ? getRefs(resource.hasMember) : [];
+      const deviceRef = resource.device?.reference ? [resource.device?.reference] : [];
+      const medicationRef = resource.medicationReference?.reference
+        ? [resource.medicationReference?.reference]
+        : [];
       const resourceRef = `${resource.resourceType}/${resource.id}`;
       return {
-        refs: [...acc.refs, ...performerRef, ...partOfRef, ...hasMemberRef],
+        refs: [
+          ...acc.refs,
+          ...performerRef,
+          ...partOfRef,
+          ...hasMemberRef,
+          ...deviceRef,
+          ...medicationRef,
+        ],
         bundleResources: [...acc.bundleResources, resourceRef],
       };
     },

diff --git a/ips_ig/src/operations.ts b/ips_ig/src/operations.ts
@@ -1,4 +1,5 @@
 import { randomUUID } from "node:crypto";
+import assert from "node:assert";
 import { FastifyReply } from "fastify";
 import { Request } from "./types";
 import {
@@ -11,7 +12,8 @@ import { Patient } from "@aidbox/sdk-r4/types";
 
 const generateSummary = async ({ http, appConfig }: Request, patient: Patient) => {
   try {
-    const patientId = patient.id!!;
+    assert(patient.id, "Patient Id is required");
+    const patientId = patient.id;
     const { sections, bundleData }: any = await generateSections(http, patientId);
     const composition = createComposition(sections, patientId);
     const refResources = await getResourcesFromRefs(http, bundleData);