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Update aging UMAP coords #71

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Jan 17, 2025
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Update aging UMAP coords #71

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6 changes: 3 additions & 3 deletions descriptions/Zeng_Aging_Mouse_10Xv3.md
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Expand Up @@ -11,10 +11,10 @@ Data](WMB-10Xv3.md).
The expression matrices and associated metadata is hosted on AWS S3 bucket as a
AWS Public Dataset:

| Component | Current Version | Size |
|---------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------|
| Component | Current Version | Size |
|---------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------|
| Expression Matrices | [s3://allen-brain-cell-atlas/expression_matrices/Zeng-Aging-Mouse-10Xv3/20241130](https://allen-brain-cell-atlas.s3.us-west-2.amazonaws.com/index.html#expression_matrices/Zeng-Aging-Mouse-10Xv3/20241130/) | 26 GB |
| Cell and gene metadata | [s3://allen-brain-cell-atlas/metadata/Zeng-Aging-Mouse-10Xv3/20241130](https://allen-brain-cell-atlas.s3.us-west-2.amazonaws.com/index.html#metadata/Zeng-Aging-Mouse-10Xv3/20241130/) | 702 MB |
| Cell and gene metadata | [s3://allen-brain-cell-atlas/metadata/Zeng-Aging-Mouse-10Xv3/20250131](https://allen-brain-cell-atlas.s3.us-west-2.amazonaws.com/index.html#metadata/Zeng-Aging-Mouse-10Xv3/20250131/) | 699 MB |

Data is being share under the CC BY NC 4.0 license.

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2 changes: 2 additions & 0 deletions intro.md
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Expand Up @@ -69,6 +69,8 @@ notebook.
(Kimberly Siletti)**

## Release Notes
* **[Update aging Mouse UMAP (version 20250131), abc_atlas_access (v0.5.0)]**
* Fix 588 cells with missing UMAP coordinates.
* **[Aging Mouse data (version 20241130), abc_atlas_access (v0.4.0)]**
* Add the Jin et al., aging mouse dataset.
* 1.2 million cells divided into adult and aged mouse cells.
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44 changes: 40 additions & 4 deletions notebooks/Zeng_Aging_Mouse_10x_snRNASeq_tutorial.ipynb
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1,925 changes: 208 additions & 1,717 deletions notebooks/Zeng_Aging_Mouse_clustering_analysis_and_annotation.ipynb
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -4,7 +4,7 @@ build-backend = "hatchling.build"

[project]
name = "abc_atlas_access"
version = "0.4.0"
version = "0.5.0"
description = "A package for accessing/processing data from the ABC Atlas"
dependencies = [
"anndata",
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