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Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.

R 22 6 Updated Oct 17, 2024

StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitative proteomics

R 12 2 Updated Mar 13, 2022

A project for exploring differentially active signaling paths related to proteomics datasets

Java 39 11 Updated Oct 22, 2024

R package - MSstats

R 75 46 Updated Jan 17, 2025

Differential Expression Analysis tool box R lang package for omics data

R 42 7 Updated Jan 10, 2025

ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data

R 5 Updated Oct 12, 2024

ConsensusTME Gene Sets and R Script

R 39 17 Updated Jun 6, 2024

Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation

Jupyter Notebook 6 1 Updated May 18, 2024

Multi-omics data integration project designed and taught for the EMBL/EBI course: Introduction to Multiomics Data Integration and Visualisation (2020)

HTML 2 Updated Mar 2, 2020

General statistics, mathematical programming, and numerical/scientific computing scripts and notebooks in Python

Jupyter Notebook 903 377 Updated Sep 18, 2022

A Repository consisting of various visualisation libraries and tools

HTML 73 59 Updated Sep 9, 2019
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