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  • Arizona State University
  • Tempe, AZ

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A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

HTML 13 6 Updated Jul 14, 2024

BinaRena: Interactive Visualization and Binning of Metagenomic Contigs

JavaScript 30 6 Updated Aug 22, 2024

A collection of python and bash scripts for various bioinformatics-related tasks

Python 11 3 Updated Sep 19, 2024

Rapid and simple taxonomic profiling of genome and metagenome contigs

Python 27 5 Updated Jun 13, 2023

Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables

Python 2 1 Updated Apr 20, 2021

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

Python 54 12 Updated Mar 2, 2022

Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs

Python 3 Updated Feb 28, 2023
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