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Introduced log_summary module for custom logs. Improvements in read-lab and excel-merging in sftp_handle #25

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Introduced log_summary module for custom logs. Improvements in read-lab and excel-merging in sftp_handle

Introduced log_summary module for custom logs. Improvements in read-lab and excel-merging in sftp_handle #25

Run time

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Job Run time
test_map (-d 'ENA' -f relecov_tools/schema/ena_schema.json)
34s
test_all_modules (read-lab-metadata)
34s
test_map (-d 'GISAID' -f relecov_tools/schema/gisaid_schema.json)
36s
security_check
5s
test_all_modules (read-bioinfo-metadata)
33s
test_all_modules (validate)
36s
test_sftp_handle (download_only)
1m 33s
test_sftp_handle (download_only, -t COD-test-1)
1m 54s
test_sftp_handle (download_clean)
1s
test_sftp_handle (download_clean, -t COD-test-1)
1s
test_sftp_handle (delete_only)
1s
test_sftp_handle (delete_only, -t COD-test-1)
1s
6m 29s