Release v2.0.0

v2.0.0

Release Notes:

• Ported key functions of the shiny application to an R package: mpstr
• Batch correction added
• Support for multi-chip GEO experiments
• Upgraded L2P to latest R package version
• Supports uploading group and/or batch information from an excel file
• Supports one-to-many relationships between sample and group metadata
• GSE upload error catching
  • When the user enters an invalid GSE ID: ie 1234
  • When the user enters a valid GSE ID for a non-Affymetrix chip: ie GSE141545
  • When the user enters a valid GSE ID for an Affymetrix chip that is not supported: ie for rat GSE86329

Release v1.0 August 4th 2017

Updated version

• supports current Affymetrix human and mouse R libraries:

pd.mogene.2.0.st
mogene20sttranscriptcluster.db
pd.hg.u133.plus.2
hgu133plus2.db
pd.hugene.2.0.st
hugene20sttranscriptcluster.db
pd.clariom.s.human.ht)
clariomshumanhttranscriptcluster.db
pd.clariom.s.human
clariomshumantranscriptcluster.db
pd.clariom.s.mouse.ht
clariomsmousehttranscriptcluster.db
pd.clariom.s.mouse
clariomsmousetranscriptcluster.db

• runs L2P as a new enrichment pathway analysis tool
• improved HTML report