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Splines fixes#223

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blegouix wants to merge 246 commits intomainCExA-project/ddc:mainfrom splines-releaseCExA-project/ddc:splines-releaseCopy head branch name to clipboard

+6-6

Commits

Commits on Jul 3, 2023

• wip

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• wip

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• wip on serial version of sll in ddc

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• compile but tests fail

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Commits on Jul 4, 2023

• clangd-format

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• fix virtual/ovveride keywords, ctest pass

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Commits on Jul 6, 2023

• operator << inside matrix class

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Commits on Jul 8, 2023

• Create function_basis_specs

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• Update function_basis_specs

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Commits on Jul 9, 2023

• First PETSc KSP solve (but of the wrong problem)

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Commits on Jul 10, 2023

• fix petsc things, matrix correctly stored (+ restore original solve method call)

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Commits on Jul 20, 2023

• wip

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• ksp solve (with random matrix) works in sequential, gpu wip

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Commits on Jul 24, 2023

• petsc ksp works with kokkos on cpu but still not on gpu

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Commits on Jul 27, 2023

• working on gpu ?

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Commits on Jul 28, 2023

• setup for theards-based batching -> PETSc error

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Commits on Jul 29, 2023

• solve on gpu with ginkgo (non-batched)

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Commits on Jul 31, 2023

• clean cmake for ginkgo link

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• Coo -> Csr

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Commits on Aug 1, 2023

• batch solve on gpu

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Commits on Aug 3, 2023

• wip

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• matrix-matrix

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• minors

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Commits on Aug 28, 2023

• sparse csr with 97% sparsity

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• logger

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• convergence logger

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• Matrix_Sparse class (with krylov solver)

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• wip

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Commits on Aug 29, 2023

• first working version of 1D splines !

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• gko::Executor based on Kokkos:ExecutorSpace

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• Merge branch 'main' into splines

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• rsync from gysela/sll (new changes) + fix kokkos<->ginkgo link

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Commits on Sep 4, 2023

• wip

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Commits on Sep 6, 2023

• batched spline_builder 1D tested on cpu, only with spline computation along first dimension

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• Merge branch 'main' into splines

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Commits on Sep 11, 2023

• works on GPU

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Commits on Sep 12, 2023

• Begin templating + works on CPU and GPU

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• ddc policy obtained from Kokkos ExecSpace

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• Merge branch 'kokkos_policy' into splines

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• policy<ExecSpace> from for_each.hpp

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• nbatch != ncells

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Commits on Sep 13, 2023

• remove zeros from csr and externalize preconditionner

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Commits on Sep 15, 2023

• Cleaning, several Kokkos::view replaced by Chunks

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• wip (not in compile state)

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• TypeSeqReplace

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• Merge branch 'typeseq_replace' into splines

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• still wip (no compilation)

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Commits on Sep 16, 2023

• replace_dim_of (not tested yet)

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• Merge branch 'typeseq_replace' into splines

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• wip

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• wip

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• Works for X and Y interest dimensions! Fully templated

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• Update tests/type_seq.cpp

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• Update include/ddc/detail/type_seq.hpp

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• Merge branch 'typeseq_replace' of github.com:Maison-de-la-Simulation/ddc into typeseq_replace

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• fix

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Commits on Sep 17, 2023

• wip

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Commits on Sep 22, 2023

• wip

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Commits on Sep 23, 2023

• wip

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• Merge

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• wip

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• Merge branch 'element_generalized' into splines

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  committed
  3d2f766

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• cleaning

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• Merge branch 'element_generalized' into splines

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Commits on Sep 24, 2023

• wip

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• Generalize also DiscreteDomain constructor

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• clang-format

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• Merge branch 'element_generalized' into splines

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• 3D batched_spline_builder working!

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• handle 1D case (but problem with sfinae and nvcc)

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• replace sfinae with an if constexpr for nvcc compatibility

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Commits on Sep 25, 2023

• handle 1D case

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• (huge) cleaning

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• clangd-format

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Commits on Sep 26, 2023

• Kokkos_malloc->Kokkos::View and remove_zeros in factorization_method()

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• wip

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  9fc3abb

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• wip

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• chunks of B&X to be trated by ginkgo (parallel not working)

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Commits on Sep 27, 2023

• fix

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  ca88bba

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• remove a deepcopy + rename

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Commits on Sep 28, 2023

• not working

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• fix

  blegouix

  committed
  427e49c

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• Merge branch 'kokkos_for_0D' into splines

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• 1D case naturally managed

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• 4D tests

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• remove MemorySpace from template

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Commits on Sep 30, 2023

• wip

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• batched evaluator (segfault on gpu)

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Commits on Oct 2, 2023

• wip

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• wip

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Commits on Oct 3, 2023

• bug commit

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• wip

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• working on gpu BUT there is a bypass of Chunkspan[] on gpu which makes it wrong!

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• cleaning

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• clang-format

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• determine matrix_sparse slicing according to backend

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Commits on Oct 4, 2023

• Merge branch 'main' into splines

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• comment non-batched cmake

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  9bfe920

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• minor change to reduce number of warnings

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  1b27a65

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• wip

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• wip

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  9c03acc

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• wip

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• ddc namespace for ex-sll & clang-format

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Commits on Oct 5, 2023

• reactivate periodic test

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  2fe6445

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• changes for gysela

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• wip

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Commits on Oct 6, 2023

• other changes for gysela

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• Merge branch 'main' into splines

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  committed
  820ddd0

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• minor fix

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  109d7e1

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• wip

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  committed
  12493ec

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• Merge branch 'splines' of github.com:Maison-de-la-Simulation/ddc into splines

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  committed
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• Merge branch 'splines' of github.com:Maison-de-la-Simulation/ddc into splines

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  committed
  d62ea84

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• recover non_periodic 1D test

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• recover 2D_spline test

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• recover other 2d test

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  4695af5

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• prepare non_periodic batched splines

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  32316d4

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• wip on non-periodic

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  committed
  295aab6

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• restore non-batched Lapack method with a kwargs to choose between ginkgo and lapack

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• builder_2d based on Lapack + fix + clang-format

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• clang-format

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Commits on Oct 7, 2023

• wip

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  committed
  6bff755

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• minor fix

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  committed
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• kokkos::finalize() when sigint

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• OpenMP second loop in spline_builder_2d (but non_periodic test dont works with LAPACK, which is a bit weird)

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• main loops of spline_builder_2D parallelized but LAPACK not working in non_periodic case

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• Merge branch 'kokkos-finalize-sigint' into splines

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• 2D exec_spaces based on 1D spline_builders

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• wip

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  committed
  3b6d4a2

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Commits on Oct 8, 2023

• improve slicing

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• Merge branch 'main' into element_generalized

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  36ae6fc

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• workaround to issue #193

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  6ff5f77

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• call of operator[] inside spline_evaluator

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  12e5a2a

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Commits on Oct 9, 2023

• optimize allocation

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• fix

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  committed
  e88bed2

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• fix

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  committed
  491085a

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Commits on Oct 10, 2023

• ginkgo inplace solve

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  committed
  c927905

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Commits on Oct 11, 2023

• spline_evalutor derivates

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  committed
  cf3dfb6

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• wip

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  348fa88

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• integrals

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  e59729a

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Commits on Oct 12, 2023

• cleaning + comments

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  697155b

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• wip on release (removing files)

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  f055c16

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• reactivate few tests

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  a49faea

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• wip on splines-release

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• wip on splines-release

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• wip on splines-release

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• wip on splines-release

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• wip on splines-release

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  d7b903b

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• wip on splines-release

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• clang-format

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  edf490c

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• cmake changes

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  8eed569

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• minor

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• remove SLL_ prefix in tests

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  8e94a0d

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• clean ddc.hpp

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• Merge branch 'main' into element_generalized

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• forgotten in merge

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• Merge branch 'element_generalized' into splines-release

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  committed
  3f1b5db

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• revert kokkos-finalize-sigint merge

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  6c7eb94

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• cleaning

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  committed
  ce47d79

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• fix on GPU

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  committed
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Commits on Oct 13, 2023

• throw runtime error when MatrixSparse::get_element() is called

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Commits on Oct 16, 2023

• periodicity test

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  17af507

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• fix periodicity

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  960b785

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• clean spline_evaluator

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  committed
  02d2eb9

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• fix

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  committed
  57ab8aa

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• remove GInkgo

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  10f3827

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• fix on GPU

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  81272e6

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• clang-format

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Commits on Oct 17, 2023

• characteristics_advection example

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• improve advection test

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• add test matrix_sparse

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Commits on Oct 18, 2023

• splines.hpp

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• simplify includes

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  a62d4d8

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• fix

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  6d36ded

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• benchmark (but problem)

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Commits on Oct 19, 2023

• wip on benchmark

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  a63011e

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• benchmark working

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• memory occupancy benchmark

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• plotter

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  935efaa

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• improve

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• improve plotter

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Commits on Oct 20, 2023

• changes from Thomas' review

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• changes from Thomas' review on matrix_sparse

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• changes from Thomas' review

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• changes from Thomas' review in spline_evaluator_batched

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