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#62 Update package_info with immersed boundary
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@kwabenantim
kwabenantim committed Feb 29, 2024
1 parent a71cfe6 commit cf61be4
Showing 1 changed file with 83 additions and 0 deletions.
83 changes: 83 additions & 0 deletions dynamic/wrapper_generators/package_info.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -119,6 +119,8 @@ modules:
- name: NodesOnlyMesh
- name: PottsElement
- name: PottsMesh
- name: FluidSource
- name: ImmersedBoundaryElement
- name: PottsMeshGenerator
- name: VertexMesh
excluded_methods:
Expand All @@ -142,13 +144,16 @@ modules:
excluded_methods:
- GetInstanceOfMismatchedBoundaryNodes
- name: Toroidal2dVertexMesh
- name: ImmersedBoundaryMesh
- name: HoneycombMeshGenerator
- name: HoneycombVertexMeshGenerator
- name: CylindricalHoneycombMeshGenerator
- name: CylindricalHoneycombVertexMeshGenerator
- name: ToroidalHoneycombMeshGenerator
- name: ToroidalHoneycombVertexMeshGenerator
- name: VoronoiVertexMeshGenerator
- name: ImmersedBoundaryHoneycombMeshGenerator
- name: ImmersedBoundaryPalisadeMeshGenerator
- name: cell_based
source_locations:
- cell_based/src
Expand Down Expand Up @@ -342,6 +347,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: AbstractCellPopulationCountWriter
Expand All @@ -350,6 +356,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: AbstractCellPopulationEventWriter
Expand All @@ -358,6 +365,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: BoundaryNodeWriter
Expand All @@ -366,6 +374,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellAgesWriter
Expand All @@ -392,6 +401,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellIdWriter
Expand All @@ -406,6 +416,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellMutationStatesWriter
Expand All @@ -417,6 +428,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellPopulationAreaWriter
Expand All @@ -425,6 +437,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellPopulationElementWriter
Expand All @@ -433,6 +446,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellProliferativePhasesCountWriter
Expand All @@ -441,6 +455,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellProliferativePhasesWriter
Expand All @@ -452,6 +467,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellProliferativeTypesWriter
Expand All @@ -466,6 +482,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: CellRosetteRankWriter
Expand All @@ -480,6 +497,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: LegacyCellProliferativeTypesWriter
Expand All @@ -491,6 +509,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: NodeVelocityWriter
Expand All @@ -499,6 +518,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: PottsMeshWriter
Expand All @@ -508,6 +528,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: VertexIntersectionSwapLocationsWriter
Expand All @@ -516,6 +537,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: VertexT1SwapLocationsWriter
Expand All @@ -524,6 +546,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: VertexT2SwapLocationsWriter
Expand All @@ -532,6 +555,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: VertexT3SwapLocationsWriter
Expand All @@ -540,6 +564,7 @@ modules:
- MeshBasedCellPopulation.hpp
- PottsBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- VertexBasedCellPopulation.hpp
- name: VoronoiDataWriter
Expand All @@ -549,6 +574,13 @@ modules:
- PottsBasedCellPopulation.hpp
- NodeBasedCellPopulation.hpp
- CaBasedCellPopulation.hpp
- ImmersedBoundaryCellPopulation.hpp
- name: ImmersedBoundaryBoundaryCellWriter
source_includes:
- ImmersedBoundaryCellPopulation.hpp
- name: ImmersedBoundaryNeighbourNumberWriter
source_includes:
- ImmersedBoundaryCellPopulation.hpp
- name: CellLabelWriter
source_includes:
- AbstractCellPopulation.hpp
Expand All @@ -571,6 +603,8 @@ modules:
- name: FixedCentreBasedDivisionRule
- name: AbstractCentreBasedDivisionRule
- name: ShortAxisVertexBasedDivisionRule
- name: AbstractImmersedBoundaryDivisionRule
- name: ShortAxisImmersedBoundaryDivisionRule
- name: RandomCaSwitchingUpdateRule
- name: ChemotaxisPottsUpdateRule
- name: AbstractCaSwitchingUpdateRule
Expand All @@ -595,6 +629,13 @@ modules:
- name: NagaiHondaDifferentialAdhesionForce
excluded_methods:
- GetAdhesionParameter
- name: AbstractImmersedBoundaryForce
- name: ImmersedBoundaryKinematicFeedbackForce
- name: ImmersedBoundaryLinearDifferentialAdhesionForce
- name: ImmersedBoundaryLinearInteractionForce
- name: ImmersedBoundaryLinearMembraneForce
- name: ImmersedBoundaryMorseInteractionForce
- name: ImmersedBoundaryMorseMembraneForce
- name: AbstractCellKiller
- name: PlaneBasedCellKiller
- name: ApoptoticCellKiller
Expand Down Expand Up @@ -672,6 +713,45 @@ modules:
- VertexT2SwapLocationsWriter.hpp
- VertexT3SwapLocationsWriter.hpp
- VoronoiDataWriter.hpp
- name: ImmersedBoundaryCellPopulation
excluded_methods:
- rGetMesh
- GetTetrahedralMeshForPdeModifier
custom_generator: CPPWG_SOURCEROOT/projects/PyChaste/dynamic/wrapper_generators/PopulationWriter_custom.py
source_includes:
- CellAgesWriter.hpp
- CellAncestorWriter.hpp
- CellAppliedForceWriter.hpp
- CellCycleModelProteinConcentrationsWriter.hpp
- CellDataItemWriter.hpp
- CellDeltaNotchWriter.hpp
- CellDivisionLocationsWriter.hpp
- CellIdWriter.hpp
- CellLocationIndexWriter.hpp
- CellMutationStatesCountWriter.hpp
- CellMutationStatesWriter.hpp
- CellPopulationAdjacencyMatrixWriter.hpp
- CellPopulationAreaWriter.hpp
- CellPopulationElementWriter.hpp
- CellProliferativePhasesCountWriter.hpp
- CellProliferativePhasesWriter.hpp
- CellProliferativeTypesCountWriter.hpp
- CellProliferativeTypesWriter.hpp
- CellRadiusWriter.hpp
- CellRemovalLocationsWriter.hpp
- CellRosetteRankWriter.hpp
- CellVolumesWriter.hpp
- HeterotypicBoundaryLengthWriter.hpp
- LegacyCellProliferativeTypesWriter.hpp
- NodeLocationWriter.hpp
- NodeVelocityWriter.hpp
- PottsMeshWriter.hpp
- RadialCellDataDistributionWriter.hpp
- VertexIntersectionSwapLocationsWriter.hpp
- VertexT1SwapLocationsWriter.hpp
- VertexT2SwapLocationsWriter.hpp
- VertexT3SwapLocationsWriter.hpp
- VoronoiDataWriter.hpp
- name: MeshBasedCellPopulation
excluded_methods:
- GetVoronoiTessellation
Expand Down Expand Up @@ -922,6 +1002,9 @@ modules:
- name: TargetAreaLinearGrowthModifier
- name: VolumeTrackingModifier
- name: VtkSceneModifier
- name: ImmersedBoundarySimulationModifier
- name: ImmersedBoundarySvgWriter
- name: NormallyDistributedTargetAreaModifier
- name: AbstractCellBasedSimulation
excluded_methods:
- GetSimulationModifiers
Expand Down

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