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v7.1.0
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@henrikstranneheim henrikstranneheim released this 19 Jun 11:41
· 3942 commits to master since this release
v7.1.0
a71515d

[7.1.0]

  • Updated TIDDIT to enable faster processing
  • Updated GATK for faster haplotypecalling
  • Removed plink memory allocation from rd_dna_vcf_rerun
  • Increased memory allocation for vep (snv/indel)
  • Allow "unknown" sex when using expansionhunter by then not using gender in expansionhunter CLI
  • Updated stranger to version 0.5.4 to avoid repeat id warnings
  • Increased recipe memory for plink and vcf2cytosure
  • Added removal of genomicsDB dir from potential previous analysis as it causes gatk genotyping to crash

Tools

  • TIDDIT: 2.5.0 -> 2.7.1
  • bcftools: 1.9-h4da6232_0 -> 1.9=ha228f0b_4
  • bioconductor-deseq2: 1.18.1=r3.4.1_1 -> 1.22.1=r351hf484d3e_0
  • bioconductor-tximport: 1.8.0=r341_0 -> 1.12.0=r351_0
  • GATK: 4.1.0.0-0 -> 4.1.2.0-1
  • samtools: 1.9-h8ee4bcc_1 -> 1.9=h8571acd_11
  • stranger: 0.5.1 -> 0.5.4
Assets 2
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