add rounding and remove unsupported characters from run design csv

Clinical-Genomics · Dec 4, 2024 · 2192eb3 · 2192eb3
1 parent 44088c3
commit 2192eb3
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/cg_lims/EPPs/files/smrt_link/models.py b/cg_lims/EPPs/files/smrt_link/models.py
@@ -246,7 +246,7 @@ def __init__(self, process: Process):
         self.instrument_type = process.udf.get("Instrument Type")
         self.plate_1_type = process.udf.get("Plate 1 Type")
         self.plate_2_type = process.udf.get("Plate 2 Type")
-        self.run_comments = f"Generated by automation in https://cg-lims-stage.sys.scilifelab.se/clarity/work-details/{process.id.split('-')[1]}"
+        self.run_comments = f"Generated by automation in Clarity LIMS step {process.id}"
         self.movie_acquisition_time = process.udf.get("Movie Acquisition Time (hours)")
         self.adaptive_loading = process.udf.get("Adaptive Loading")
         self.base_kinetics = process.udf.get("Include Base Kinetics")

diff --git a/cg_lims/EPPs/udf/set/set_revio_sequencing_settings.py b/cg_lims/EPPs/udf/set/set_revio_sequencing_settings.py
@@ -51,7 +51,7 @@ def calculate_weighted_average_size(artifact: Artifact) -> float:
     for input_artifact in input_artifacts:
         sizes.append(input_artifact.udf.get("Size (bp)"))
         volumes.append(input_artifact.udf.get("Volume of sample (ul)"))
-    return np.average(sizes, weights=volumes)
+    return round(np.average(sizes, weights=volumes), 0)
 
 
 def get_library_concentration(artifact: Artifact) -> float: