add sequencing plate part numbers

cg_lims/EPPs/files/smrt_link/models.py

@@ -191,8 +191,8 @@ class RevioRun:
     pools: List[Artifact]
     run_name: str
     instrument_type: str
-    plate_1: str
-    plate_2: Optional[str]
+    plate_1_type: str
+    plate_2_type: Optional[str]
     file_version: int = 1
     run_comments: Optional[str]
     movie_acquisition_time: int
@@ -207,17 +207,21 @@ def __init__(self, process: Process):
         self.pools: List[Artifact] = get_artifacts(process=process)
         self.run_name: str = process.udf.get("Run Name")
         self.instrument_type: str = process.udf.get("Instrument Type")
-        self.run_comments: str = "Generated by automation in cg-lims.sys.scilifelab.se"
+        self.run_comments: str = (
+            f"Generated by automation in https://cg-lims-stage.sys.scilifelab.se/clarity/work-details/{process.id.split('-')[1]}"
+        )
         self.movie_acquisition_time: str = process.udf.get("Movie Acquisition Time (hours)")
         self.adaptive_loading: bool = process.udf.get("Adaptive Loading")
         self.base_kinetics: bool = process.udf.get("Include Base Kinetics")
         self.consensus_mode: bool = process.udf.get("Consensus Mode")
+        self.plate_1_type: str = process.udf.get("Plate 1 Type")
+        self.plate_2_type: str = process.udf.get("Plate 2 Type")
 
     def _create_run_settings(self) -> str:
         """Return the [Run Settings] section of the run design."""
-        plate_rows: str = f"Plate 1,{self.plates[1]}\n"
+        plate_rows: str = f"Plate 1,{PLATE_PART_NUMBERS[self.plate_1_type]}\n"
         if self.plates[2]:
-            plate_rows += f"Plate 2,{self.plates[2]}\n"
+            plate_rows += f"Plate 2,{PLATE_PART_NUMBERS[self.plate_2_type]}\n"
         return (
             f"{RunDesignHeader.RUN_SETTINGS}\n"
             f"Instrument Type,{self.instrument_type}\n"