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move movie udf to artifact
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Karl-Svard committed Dec 9, 2024
1 parent a023a73 commit 513b9f4
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions cg_lims/EPPs/files/smrt_link/models.py
Original file line number Diff line number Diff line change
Expand Up @@ -195,7 +195,6 @@ class RevioRun:
plate_2_type: Optional[str]
file_version: int = 1
run_comments: Optional[str]
movie_acquisition_time: int
adaptive_loading: bool = True
base_kinetics: bool = False
consensus_mode: bool = True
Expand All @@ -210,7 +209,6 @@ def __init__(self, process: Process):
self.plate_1_type = process.udf.get("Plate 1 Type")
self.plate_2_type = process.udf.get("Plate 2 Type")
self.run_comments = f"Generated by automation in Clarity LIMS step {process.id}"
self.movie_acquisition_time = process.udf.get("Movie Acquisition Time (hours)")
self.adaptive_loading = process.udf.get("Adaptive Loading")
self.base_kinetics = process.udf.get("Include Base Kinetics")
self.consensus_mode = process.udf.get("Consensus Mode")
Expand Down Expand Up @@ -262,7 +260,7 @@ def _create_smrt_cell_settings(self) -> str:
pool.udf.get("Library Type"),
pool.udf.get("Revio Application"),
POLYMERASE_KITS[pool.udf.get("Polymerase Kit")],
self.movie_acquisition_time,
pool.udf.get("Movie Acquisition Time (hours)"),
pool.udf.get("Mean Size (bp)"),
pool.udf.get("Library Concentration (pM)"),
self.adaptive_loading,
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