finishing touches

cg_lims/EPPs/files/smrt_link/models.py

@@ -149,10 +149,10 @@ def get_sample_setup_row(self) -> List[str]:
 
 def _build_plate_dict(process: Process) -> Dict[Any, Any]:
     """Create a sequencing plate dict containing plate position (int) and Container object"""
-    containers = process.output_containers()
-    plate_1 = process.udf.get("Plate 1")
-    plate_2 = process.udf.get("Plate 2")
-    plate_dict = {}
+    containers: List[Container] = process.output_containers()
+    plate_1: str = process.udf.get("Plate 1")
+    plate_2: str = process.udf.get("Plate 2")
+    plate_dict: Dict[Any, Any] = {}
     for container in containers:
         if container.name == plate_1:
             plate_dict[1] = container.name

cg_lims/EPPs/files/smrt_link/run_design.py

@@ -14,7 +14,7 @@
 @options.file_placeholder()
 @click.pass_context
 def create_smrtlink_run_design(ctx, file: str):
-    """Create pooling calculation .csv files for SMRT Link import."""
+    """Create a run design .csv file for SMRT Link import."""
     LOG.info(f"Running {ctx.command_path} with params: {ctx.params}")
 
     process: Process = ctx.obj["process"]

cg_lims/EPPs/udf/calculate/revio_pooling.py

@@ -125,7 +125,7 @@ def revio_pooling(
     target_volume_udf: str,
     target_concentration_udf: str,
 ):
-    """Calculate and set the pooling aliquots needed to prepare for Revio sequencing."""
+    """Calculate and set the pooling aliquots needed for pooling SMRTbell libraries."""
 
     LOG.info(f"Running {ctx.command_path} with params: {ctx.params}")