bugfix (#81)

Clinical-Genomics · Aug 18, 2021 · caa4cea · caa4cea
1 parent 869e9e3
commit caa4cea
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Showing 2 changed files with 7 additions and 7 deletions.
diff --git a/cg_lims/EPPs/udf/calculate/sum_missing_reads_in_pool.py b/cg_lims/EPPs/udf/calculate/sum_missing_reads_in_pool.py
@@ -10,7 +10,7 @@
 LOG = logging.getLogger(__name__)
 
 
-def sum_reads_in_ppol(artifacts: list) -> Tuple[int, int]:
+def sum_reads_in_pool(artifacts: list) -> Tuple[int, int]:
     """Summing the missing reads for all samples in one pool."""
 
     failed_arts = 0
@@ -45,7 +45,7 @@ def missing_reads_in_pool(ctx):
 
     try:
         artifacts = get_artifacts(process=process, input=False)
-        passed_arts, failed_arts = sum_reads(artifacts=artifacts)
+        passed_arts, failed_arts = sum_reads_in_pool(artifacts=artifacts)
         message = f"Updated {passed_arts}. Ignored {failed_arts} due to missing Sample UDFs: 'Reads missing (M)'"
         if failed_arts:
             LOG.error(message)

diff --git a/tests/EPPs/test_sum_missing_reads_in_pool.py b/tests/EPPs/test_sum_missing_reads_in_pool.py
@@ -1,5 +1,5 @@
 from genologics.entities import Process
-from cg_lims.EPPs.udf.calculate.sum_missing_reads_in_pool import sum_reads_in_ppol
+from cg_lims.EPPs.udf.calculate.sum_missing_reads_in_pool import sum_reads_in_pool
 from cg_lims.get.artifacts import get_artifacts
 from tests.conftest import server
 
@@ -12,8 +12,8 @@ def test_sum_reads_pool(lims):
     process = Process(lims, id="24-196210")
     artifacts = get_artifacts(process=process, input=False)
 
-    # WHEN running sum_reads_in_ppol
-    passed_artifacts, failed_artifacts = sum_reads_in_ppol(artifacts=artifacts)
+    # WHEN running sum_reads_in_pool
+    passed_artifacts, failed_artifacts = sum_reads_in_pool(artifacts=artifacts)
 
     # THEN all pools passed and each pool udf: 'Missing reads Pool (M)' is the sum of ther sample reads.
     assert failed_artifacts == 0
@@ -32,8 +32,8 @@ def test_sum_reads_pool_missing_udf(lims):
     a_sample_in_a_pool.udf["Reads missing (M)"] = None
     a_sample_in_a_pool.put()
 
-    # WHEN running sum_reads_in_ppol,
-    passed_artifacts, failed_artifacts = sum_reads_in_ppol(artifacts=artifacts)
+    # WHEN running sum_reads_in_pool,
+    passed_artifacts, failed_artifacts = sum_reads_in_pool(artifacts=artifacts)
 
     # THEN assert one artifact failed
     assert failed_artifacts == 1