Generalize and rename buffer aliquotation script used in the Sample Placement step in several LIMS workflows

[idalindegaard]

Added

Changed

• Re-named calculate-water to calculate-buffer
• Re-named main function from volume_water to volume_buffer
• Added new CLI flags for specifying UDF names for volumes

Fixed

Steps to consider while deploying

• Configuration changes:
• Documentation updates:
• Inform users by email:

Review:

• Code approved by
• Tests executed on stage by: (Document the test done with screen shots and description.)
• "Merge and deploy" approved by

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[idalindegaard]

When specifying the volume UDFs as CLI flags, the script worked for different buffer cases, see example below:

In Sample placement for the WGS Watchmaker workflow:

lims -c <config> -l <log> -p <process> udf calculate volume-buffer -svl 50 -v 'Sample Volume (ul)' -b 'EB Volume (ul)' --total-volume-udf 'Total Volume (uL)'

In Sample placement for the TWIST workflow:
lims -c <config> -l <log> -p <process> udf calculate volume-buffer -svl 50 -v 'Sample Volume (ul)' -b 'Volume H2O (ul)' --total-volume-udf 'Total Volume (uL)'

[Karl-Svard]

Great work! 🔥