Volume as process udf to calculate amount

[idalindegaard]

Added

• The option to calculate the amount with the volume as a process udf in the step

Changed

Fixed

Steps to consider while deploying

• Configuration changes:
• Documentation updates:
• Inform users by email:

Review:

• Code approved by
• Tests executed on stage by: (Document the test done with screen shots and description.)
• "Merge and deploy" approved by

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[Karl-Svard]

Very nice!

[idalindegaard]

Testing on stage

EPP: Calculate Amount after SRE

bash -c -l "conda activate cg_lims &&  lims -c /home/glsai/.genologics.yaml epps -l {compoundOutputFileLuid0} -p {processLuid}  udf calculate calculate-amount-ng --concentration-udf 'Concentration' --amount-udf 'Amount (ng)' --volume-udf 'Volume (ul)' --total-volume-pudf 'Elution Volume (ul)' --subtract-volume 0"

Works as intended, if no volume is given the script gives an error message (I will make the process udf "Elution Volume (ul)" required for the future)

EPP: Calculate Amount Revio (for measurement)
Just to check that a configuration where an artifact Volume (ul) udf is used works as normal

bash -c -l "conda activate cg_lims &&  lims -c /home/glsai/.genologics.yaml epps -l {compoundOutputFileLuid0} -p {processLuid}  udf calculate calculate-amount-ng --concentration-udf 'Concentration' --amount-udf 'Amount (ng)' --volume-udf 'Volume (ul)' --subtract-volume 2 -m"

Works as intended

EPP: Calculate Amount after SRE (preset 75)
Just to check that a configuration with a preset volume is used as normal

bash -c -l "conda activate cg_lims &&  lims -c /home/glsai/.genologics.yaml epps -l {compoundOutputFileLuid0} -p {processLuid}  udf calculate calculate-amount-ng --concentration-udf 'Concentration' --amount-udf 'Amount (ng)' --volume-udf 'Volume (ul)' --subtract-volume 0 --preset-volume 75"

Works as intended