Release v7.13.0

Generalize and rename buffer aliquotation script used in the Sample Placement step in several LIMS workflows (#534) (minor)

Changed

• Re-named calculate-water to calculate-buffer
• Re-named main function from volume_water to volume_buffer
• Added new CLI flags for specifying UDF names for volumes

Release v7.12.0

Update library normalization script to work with the new Watchmaker LIMS workflow (#533)(minor)

Changed

• Re-named pool-normalization EPP to library-normalization
• Added new CLI flags for specifying UDF names in library-normalization

Release v7.11.2

Count NTC reads in sequencing QC check (#531)(patch)

Changed

• NTCs now won't fail when having either reads or Q30 values below the given QC thresholds

Release v7.11.1

change constants for minimum lane volume (#526)

Changed

• Constants for minimum volume per lane for flowcells 1.5, 10 and 25B with +1ul.

Release v7.11.0

New EPP Adjust missing reads for sequencing (#515)(minor)

Added

• New script: adjust_missing_reads.py in epps > udf> calculate
• Updated options.py
• Updated base.py in epps > udf> calculate

Release v7.10.6

Change ONT parser from JSON to HTML (#519)(patch)

Changed

• Modified the JSON file parser to read in the HTML report instead.
• Updated parser functions accordingly.

Release v7.10.5

Update CODEOWNERS (#516)(patch)

Changed

• Removed Amanda Raud as code owner as she is on leave for 3 years
• Added Abigayle Dalby as code owner as she will join the LIMS team in the autumn

Release v7.10.4

Patch qPCR error handling (#507)

• rework error handling

• fix bug

• add new function for setting UDF values for missing samples

• add further logging, and add fragment size support to failed samples

Release v7.10.3

Update xml_to_udf.py (#505)(patch)

Changed

• Reverted to the old flow cell path to minimize the amount of different mounts needed

Release v7.10.2

Patch ONT reload amount EPP (#503)(patch)

Fixed

• Corrected the master step name used for the ONT reload