Bump python version in GHA config to 3.6.15 #2
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name: Python Package using Conda | |
on: [push] | |
jobs: | |
build-linux: | |
runs-on: ubuntu-latest | |
strategy: | |
max-parallel: 5 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.6 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: '3.6.15' | |
- name: Add conda to system path | |
run: | | |
# $CONDA is an environment variable pointing to the root of the miniconda directory | |
echo $CONDA/bin >> $GITHUB_PATH | |
- name: Install dependencies | |
run: | | |
export LANG=en_US.iso885915 | |
conda info | |
echo $LANG | |
conda env update --file environment.yml --name base | |
- name: Install microSALT | |
run: | | |
mkdir ~/.microSALT && cp configExample.json ~/.microSALT/config.json | |
GITHUB_BRANCH=${GITHUB_REF##*/} | |
branch=$GITHUB_BRANCH; yes | bash <(cat install.sh) $branch | |
conda activate microSALT | |
- name: Lint with flake8 | |
run: | | |
conda install flake8 | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Test with pytest | |
run: | | |
conda install pytest | |
pytest --cov=microSALT tests/ | |
- name: Run Coveralls | |
run: | | |
coveralls |