-
European Bioinformatics Institute
- Hinxton, United Kingdom
- https://orcid.org/0000-0003-4422-9520
Highlights
- Pro
Stars
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
interpretAMR / AMRrules
Forked from katholt/AMRrulesInterpretative standards for AMR genotypes
The Startup CTO's Handbook, a book covering leadership, management and technical topics for leaders of software engineering teams
Follow up to Grace Blackwell's 661k dataset, for 2023
Python3 package to handle job submission to a compute farm
A tool to find sequencing data and metadata from public databases.
A protein-centric CRISPR gRNA design tool for TArgeted Protein Engineering: please cite Anderson&Benns et al (2020) Mol Syst Biol (2020)16:e9475
Educational blog posts for Rust beginners
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
QC pipelines for sars-cov-2 sequence+consensus submitted to the ENA
fast sequence evolution simulation for SARS-CoV-2 and similar
VGsim is a fast and scalable simulator of viral genealogies during global pandemic.
Virus assembler from amplicon sequencing reads
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Open source code for AlphaFold 2.
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
Get assembly statistics from FASTA and FASTQ files
Deep learning for Metagenome Assembly Error Detection
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation