Skip to content
@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

Popular repositories Loading

  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 907 240

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 265 45

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 53 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 27 34

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 160 repositories
  • tanagra Public

    Repo for the Tanagra service being developed by the All of Us DRC

    DataBiosphere/tanagra’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 12 Updated Jan 15, 2025
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 907 Apache-2.0 240 396 (1 issue needs help) 13 Updated Jan 15, 2025
  • data-browser Public
    DataBiosphere/data-browser’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 4 110 2 Updated Jan 15, 2025
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 8 Apache-2.0 2 622 20 Updated Jan 15, 2025
  • terra-resource-buffer Public

    Terra Resource Buffering Service

    DataBiosphere/terra-resource-buffer’s past year of commit activity
    Java 4 BSD-3-Clause 2 0 2 Updated Jan 14, 2025
  • cbas Public
    DataBiosphere/cbas’s past year of commit activity
    Java 2 BSD-3-Clause 0 0 0 Updated Jan 14, 2025
  • terra-external-credentials-manager Public
    DataBiosphere/terra-external-credentials-manager’s past year of commit activity
    Java 4 BSD-3-Clause 0 0 1 Updated Jan 14, 2025
  • terra-docker Public
    DataBiosphere/terra-docker’s past year of commit activity
    Jupyter Notebook 27 BSD-3-Clause 34 21 7 Updated Jan 14, 2025
  • terra-scientific-pipelines-service Public
    DataBiosphere/terra-scientific-pipelines-service’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 3 Updated Jan 14, 2025
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 53 BSD-3-Clause 21 145 10 Updated Jan 14, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…