docker-compose.yml

version: '3'
services:
  nginx_proxy:
    image: nginx
    ports:
      - 127.0.0.1:4400:4400
    volumes:
      - ./nginx.conf:/etc/nginx/nginx.conf
    links:
      - ui
      - apise
  ui:
    build:
      context: ui
      dockerfile: Dockerfile.local
    volumes:
      - ./ui:/ui
      # See https://stackoverflow.com/a/32785014 for why this is needed.
      - /ui/node_modules
  # Can't use "api" because it maps to something else on Google network.
  # Use "apise" for "api server". ("apis" is also taken.)
  apise:
    build:
      # Run from project root to pick up dataset_config/.
      context: .
      dockerfile: api/Dockerfile
    ports:
      - 127.0.0.1:8390:8390
    volumes:
      # Mount the python source so that code changes don't require rebuilding
      # the image. Changes to requirements.txt will still require rebuilds.
      - ./api/data_explorer:/app/data_explorer
      # Expose gcloud credentials. This is only needed for
      # local deployment, which is authenticated as a user. This is not needed
      # for GAE deployment, which is authenticated as service account. (The
      # service account credentials are automatically picked up.)
      - ~/.config/gcloud:/root/.config/gcloud
    # --reload will restart the server after code change
    command: ["-b", ":8390", "--reload"]
    environment:
      # Needed to keep the samples file name unique across users.
      - USER
      # GOOGLE_APPLICATION_CREDENTIALS is only needed for CircleCI
      - GOOGLE_APPLICATION_CREDENTIALS
      - ELASTICSEARCH_URL=${ELASTICSEARCH_URL:-elasticsearch:9200}
      - PATH_PREFIX=/api
      - DATASET_CONFIG_DIR=${DATASET_CONFIG_DIR:-dataset_config/1000_genomes}
      # Avoid writing .pyc files back to the volume. Files generated this way
      # have restricted permissions set which cause errors on subsequent docker
      # builds.
      - PYTHONDONTWRITEBYTECODE=1
  elasticsearch:
    image: docker.elastic.co/elasticsearch/elasticsearch-oss:6.2.2
    ports:
      - 127.0.0.1:9200:9200
    environment:
      # Disable bootstrap checks so users don't have to fiddle with
      # vm.max_map_count. Note that this file is not used in production
      # deployments; bootstrap checks are still enabled for production
      # deployments.
      - "transport.host=localhost"
      - ES_JAVA_OPTS
  kibana:
    image: docker.elastic.co/kibana/kibana-oss:6.2.2
    ports:
      - 127.0.0.1:5601:5601