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Moved torch_cluster import to prevent hard dependency #21

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merged 2 commits into from
Sep 15, 2024
Merged

Moved torch_cluster import to prevent hard dependency #21

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618d2e5
Moved torch_cluster import temporarily
francois-drielsma Sep 15, 2024
0d0a148
Merge branch 'develop' of https://github.com/francois-drielsma/spine …
francois-drielsma Sep 15, 2024
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2 changes: 1 addition & 1 deletion spine/utils/ghost.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@

import numpy as np
import torch
from torch_cluster import knn
from scipy.spatial.distance import cdist

from spine.data import TensorBatch
Expand Down Expand Up @@ -179,6 +178,7 @@ def adapt_labels(clust_label, seg_label, seg_pred, ghost_pred=None,
"""
# Define operations on the basis of the input type
if torch.is_tensor(seg_label):
from torch_cluster import knn # TODO: not PEP8 compliant, refactor
dtype, device = clust_label.dtype, clust_label.device
where, cat, argmax = torch.where, torch.cat, torch.amax
ones = lambda x: torch.ones(x, dtype=dtype, device=device)
Expand Down
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