Resolved issue #503 and added printf statements for parameter tracking

- remove unnecessary columns still lingering in species.in
-add printf statements for debugging

ST_main.c

@@ -238,7 +238,7 @@ int main(int argc, char **argv) {
                 logProgress(iter, year, SIMULATION);
             }
 
-			//printf("------------------------Repetition/year = %d / %d\n", iter, year);
+			printf("------------------------Repetition/year = %d / %d\n", iter, year);
 
 			Globals->currYear = year;
 

ST_seedDispersal.c

@@ -132,10 +132,14 @@ void disperseSeeds(int year) {
 
         // These variables are independent of recipient.
         height = getSpeciesHeight(Species[sp]);
+		printf("height after getSpeciesHeight called Species = %s, height = %f\n ", Species[sp]->name, height);
+
         rate = _rateOfDispersal(Species[sp]->maxDispersalProbability,
                                 getSpeciesHeight(Species[sp]),
                                 _maxDispersalDistance(height));
 
+		printf("rate after _rateOfDispersal called Species = %s, rate = %f\n ", Species[sp]->name, rate);
+
         // Iterate through all possible recipients of seeds.
         for (receiverRow = 0; receiverRow < grid_Rows; ++receiverRow) {
           for (receiverCol = 0; receiverCol < grid_Cols; ++receiverCol) {
@@ -406,4 +410,4 @@ void _recordDispersalEvent(int year, int iteration, int fromCell, int toCell,
     _lastEvent->next = newEvent;
     _lastEvent = newEvent;
   }
-}
+}

ST_species.c

@@ -278,6 +278,8 @@ RealF getSpeciesHeight(SpeciesType* sp)
         }
     }
 
+	printf("within getSpeciesHeight maxrelsize = %f, Species mature_biomass = %f, maxHeight= %f, heightSlope= %f\n ", maxrelsize, sp->mature_biomass, sp->maxHeight, sp->heightSlope);
+
     // (maxrelsize * sp->mature_biomass) is the biomass of the individual.
     return sp->maxHeight * (1 - exp(
         -(sp->heightSlope * maxrelsize * sp->mature_biomass)));

testing.sagebrush.master/Stepwat_Inputs/Input/species.in

@@ -171,25 +171,25 @@
 # MAXD = The maximum distance, in meters, a seed can travel.
 # PMD = Probability of Maximum Dispersal. The probability that a seed disperses MAXD meters
 #
-# name 	Use	MRS	PPTdry	PPTwet	HMax	PMD	HSlope
- artr	1	0.5	105     520 	240.0	0.005	0.00181
- trdu 	0	0.5	105		520 	25.0	0.005	0.8302
- cryp 	0	0.5	105		520 	25.0	0.005	0.8302
- amre 	0	0.5	105		520 	25.0	0.005	0.8302
- chen 	0	0.5	105 	520 	180.0	0.005	0.8302
- acmi 	0	0.5	105 	520 	25.0	0.005	0.8302
- phho 	0	0.5	105 	520 	4.0		0.005	0.8302
- arfr 	0	0.5	105 	520 	30.0	0.005	0.8302
- lipu 	0	0.5	105 	520 	30.0	0.005	0.8302
- brte 	0	0.5	105 	520 	90.0	0.005	0.7674
- vuoc 	0	0.5	105 	520 	40.0	0.005	0.7674
- pssp 	0	0.5	105 	520 	24.5	0.005	0.7674
- koma 	0	0.5	105 	520 	24.5	0.005	0.7674
- bogr 	0	0.5	105 	520 	12.0	0.005	4.4117
- spcr 	0	0.5	105 	520 	24.5	0.005	0.7674
- gusa 	0	0.5	105 	520 	40.0	0.005	0.00181
- chvi 	0	0.5	105 	520 	100.0	0.005	0.00181
- oppo 	0	0.5	105 	520 	40.0	0.005	0.8302
+# name 	Use	MRS		HMax	PMD		HSlope
+ artr	1	0.5	    240.0	0.005	0.00181
+ trdu 	0	0.5	 	25.0	0.005	0.8302
+ cryp 	0	0.5	 	25.0	0.005	0.8302
+ amre 	0	0.5	 	25.0	0.005	0.8302
+ chen 	0	0.5	 	180.0	0.005	0.8302
+ acmi 	0	0.5	 	25.0	0.005	0.8302
+ phho 	0	0.5	 	4.0		0.005	0.8302
+ arfr 	0	0.5	 	30.0	0.005	0.8302
+ lipu 	0	0.5	 	30.0	0.005	0.8302
+ brte 	0	0.5	 	90.0	0.005	0.7674
+ vuoc 	0	0.5	 	40.0	0.005	0.7674
+ pssp 	0	0.5	 	24.5	0.005	0.7674
+ koma 	0	0.5	 	24.5	0.005	0.7674
+ bogr 	0	0.5	 	12.0	0.005	4.4117
+ spcr 	0	0.5	 	24.5	0.005	0.7674
+ gusa 	0	0.5	 	40.0	0.005	0.00181
+ chvi 	0	0.5	 	100.0	0.005	0.00181
+ oppo 	0	0.5	 	40.0	0.005	0.8302
 
 [end]	# this marks the end of the seed-dispersal parameters