Merge pull request #499 from DrylandEcology/make_SOILWAT2_library

Use SOILWAT2's makefile to compile a SOILWAT2 library Addressing issue #483 and contribute to DrylandEcology/SOILWAT2#89
DrylandEcology · Jul 21, 2020 · f5b64f2 · f5b64f2
2 parents f2f7df6 + abc38bc
commit f5b64f2
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Showing 27 changed files with 126 additions and 130 deletions.
diff --git a/ST_defines.h b/ST_defines.h
@@ -17,7 +17,7 @@
 #ifndef STEPPE_DEF_H
 #define STEPPE_DEF_H
 
-#include "generic.h"
+#include "sw_src/generic.h"
 
 /* see #include "ST_structs.h" below */
 

diff --git a/ST_environs.c b/ST_environs.c
@@ -19,7 +19,7 @@
 #include "ST_steppe.h"
 #include "ST_globals.h"
 #include "sw_src/pcg/pcg_basic.h"
-#include "rands.h"
+#include "sw_src/rands.h"
 #include "sxw_funcs.h"
 #include "sw_src/filefuncs.h"
 #include "sw_src/Times.h"

diff --git a/ST_grid.c b/ST_grid.c
@@ -31,14 +31,14 @@
 #include <stdio.h>
 #include <string.h>
 #include <ctype.h>
+#include "sw_src/generic.h"
+#include "sw_src/filefuncs.h"
+#include "sw_src/myMemory.h"
+#include "sw_src/rands.h"
 #include "ST_grid.h"
 #include "ST_steppe.h"
-#include "generic.h"
-#include "filefuncs.h"
-#include "myMemory.h"
 #include "ST_globals.h"
 #include "ST_stats.h"
-#include "rands.h"
 #include "sxw_funcs.h"
 #include "ST_initialization.h"
 #include "ST_progressBar.h"

diff --git a/ST_grid.h b/ST_grid.h
@@ -15,11 +15,11 @@
 #include "ST_defines.h"
 #include "sw_src/pcg/pcg_basic.h"
 #include "sxw_vars.h"
-#include "SW_Site.h"
-#include "SW_SoilWater.h"
-#include "SW_VegProd.h"
-#include "SW_Model.h"
-#include "SW_Weather.h"
+#include "sw_src/SW_Site.h"
+#include "sw_src/SW_SoilWater.h"
+#include "sw_src/SW_VegProd.h"
+#include "sw_src/SW_Model.h"
+#include "sw_src/SW_Weather.h"
 #include "ST_seedDispersal.h"
 
 /*********************** Grid Structures ****************************/

diff --git a/ST_indivs.c b/ST_indivs.c
@@ -22,8 +22,8 @@
 #include <memory.h>
 #include "ST_steppe.h"
 #include "ST_globals.h"
-#include "filefuncs.h"
-#include "myMemory.h"
+#include "sw_src/filefuncs.h"
+#include "sw_src/myMemory.h"
 
 
 /******** Modular External Function Declarations ***********/

diff --git a/ST_initialization.c b/ST_initialization.c
@@ -27,8 +27,8 @@
 #include "sw_src/pcg/pcg_basic.h"
 #include "sw_src/rands.h"
 #include "sxw_funcs.h"
-#include "myMemory.h"
-#include "filefuncs.h"
+#include "sw_src/myMemory.h"
+#include "sw_src/filefuncs.h"
 #include "ST_progressBar.h"
 #include "ST_stats.h"
 

diff --git a/ST_main.c b/ST_main.c
@@ -20,11 +20,11 @@
 #include <stdlib.h>
 #include <stdio.h>
 #include "ST_steppe.h"
-#include "generic.h"
-#include "filefuncs.h"
-#include "myMemory.h"
-#include "SW_VegProd.h"
-#include "SW_Control.h"
+#include "sw_src/generic.h"
+#include "sw_src/filefuncs.h"
+#include "sw_src/myMemory.h"
+#include "sw_src/SW_VegProd.h"
+#include "sw_src/SW_Control.h"
 #include "sw_src/pcg/pcg_basic.h"
 
 #include "sxw_funcs.h"

diff --git a/ST_mortality.c b/ST_mortality.c
@@ -26,9 +26,9 @@
 
 #include "ST_mortality.h"
 #include "sw_src/filefuncs.h"
-#include "generic.h"
-#include "rands.h"
-#include "myMemory.h"
+#include "sw_src/generic.h"
+#include "sw_src/rands.h"
+#include "sw_src/myMemory.h"
 #include "ST_steppe.h"
 #include "ST_globals.h"
 #include "sw_src/pcg/pcg_basic.h"

diff --git a/ST_mortality.h b/ST_mortality.h
@@ -10,7 +10,7 @@
 #ifndef MORTALITY_H
 #define MORTALITY_H
 
-#include "generic.h"
+#include "sw_src/generic.h"
 #include "sw_src/pcg/pcg_basic.h"
 
 /* --------------------------- Exported Structs ---------------------------- */

diff --git a/ST_output.c b/ST_output.c
@@ -16,14 +16,14 @@
 #include <string.h>
 #include "ST_steppe.h"
 #include "ST_globals.h"
-#include "filefuncs.h"
-#include "myMemory.h"
+#include "sw_src/filefuncs.h"
+#include "sw_src/myMemory.h"
 
 
 /******** Modular External Function Declarations ***********/
 /* -- truly global functions are declared in functions.h --*/
 /***********************************************************/
-#include "SW_Model.h"
+#include "sw_src/SW_Model.h"
 extern SW_MODEL SW_Model;
 
 /*------------------------------------------------------*/

diff --git a/ST_params.c b/ST_params.c
@@ -23,10 +23,10 @@
 #include <ctype.h>
 #include <errno.h>
 #include "ST_steppe.h"
-#include "generic.h"
-#include "filefuncs.h"
-#include "myMemory.h"
-#include "rands.h"
+#include "sw_src/generic.h"
+#include "sw_src/filefuncs.h"
+#include "sw_src/myMemory.h"
+#include "sw_src/rands.h"
 #include "sxw_funcs.h"
 
 
@@ -1242,7 +1242,7 @@ void parm_free_memory( void ) {
 
 
 #ifdef DEBUG_MEM
-#include "myMemory.h"
+#include "sw_src/myMemory.h"
 /**************************************************************/
 void Parm_SetMemoryRefs( void) {
 /*======================================================*/

diff --git a/ST_resgroups.c b/ST_resgroups.c
@@ -30,9 +30,9 @@
 #include <stdio.h>
 #include "ST_steppe.h"
 #include "ST_globals.h"
-#include "myMemory.h"
-#include "rands.h"
-#include "generic.h"
+#include "sw_src/myMemory.h"
+#include "sw_src/rands.h"
+#include "sw_src/generic.h"
 #include "sw_src/filefuncs.h"
 #include "ST_functions.h"
 #include "sxw_funcs.h"
@@ -1254,7 +1254,7 @@ IndivType **RGroup_GetIndivs(GrpIndex rg, const char sort, IntS *num)
 }
 
 #ifdef DEBUG_MEM
-#include "myMemory.h"
+#include "sw_src/myMemory.h"
 /*======================================================*/
 void RGroup_SetMemoryRefs( void)
 {

diff --git a/ST_seedDispersal.c b/ST_seedDispersal.c
@@ -8,8 +8,8 @@
 #include "ST_defines.h"
 #include "ST_grid.h"
 #include "ST_seedDispersal.h"
-#include "rands.h"
-#include "myMemory.h"
+#include "sw_src/rands.h"
+#include "sw_src/myMemory.h"
 
 int _do_bulk_dispersal(SppIndex sp);
 void _do_precise_dispersal(int leftoverSeeds, SppIndex sp);

diff --git a/ST_species.c b/ST_species.c
@@ -25,8 +25,8 @@
 #include "ST_steppe.h"
 #include "ST_globals.h"
 #include "sw_src/filefuncs.h"
-#include "myMemory.h"
-#include "rands.h"
+#include "sw_src/myMemory.h"
+#include "sw_src/rands.h"
 #include "sw_src/pcg/pcg_basic.h"
 #include "ST_initialization.h"
 #include "ST_seedDispersal.h"
@@ -628,7 +628,7 @@ void save_annual_species_relsize() {
 }
 
 #ifdef DEBUG_MEM
-#include "myMemory.h"
+#include "sw_src/myMemory.h"
 /*======================================================*/
 void Species_SetMemoryRefs( void)
 {

diff --git a/ST_stats.c b/ST_stats.c
@@ -35,8 +35,8 @@
 #include <string.h>
 #include <math.h>
 #include "ST_steppe.h"
-#include "filefuncs.h"
-#include "myMemory.h"
+#include "sw_src/filefuncs.h"
+#include "sw_src/myMemory.h"
 #include "ST_structs.h"
 #include "ST_stats.h" // Contains most of the function declarations.
 #include "ST_seedDispersal.h"

diff --git a/ST_steppe.h b/ST_steppe.h
@@ -15,7 +15,7 @@
 #include "ST_defines.h"
 #include "ST_functions.h"
 
-#include "generic.h"
+#include "sw_src/generic.h"
 
 #define DFLT_FIRSTFILE "files.in"
 

diff --git a/ST_structs.h b/ST_structs.h
@@ -23,7 +23,7 @@
 #ifndef STEPPE_STRUCT_DEF
 #define STEPPE_STRUCT_DEF
 
-#include "generic.h"
+#include "sw_src/generic.h"
 #include "ST_mortality.h"
 
 /**

diff --git a/makefile b/makefile
@@ -1,4 +1,5 @@
 CC  	=	gcc
+CXX   = g++
 
 CFLAGS = \
 	-std=c99 \
@@ -17,16 +18,17 @@ CFLAGS = \
 	-Wstrict-prototypes \
 	-Wunused
 
+sw2 = SOILWAT2
+lib_sw2 = lib$(sw2).a
+path_sw2 = sw_src
+
 INC_DIRS = \
 	-I. \
 	-Isqlite-amalgamation \
-	-Isw_src \
-	-Isw_src/googletest/googletest \
-	-Isw_src/googletest/googletest/include \
+	-I$(path_sw2)/googletest/googletest \
+	-I$(path_sw2)/googletest/googletest/include \
 	-Itest
 
-LIBS = -lm
-
 sources_core = \
 	sqlite-amalgamation/sqlite3.c \
 	ST_environs.c \
@@ -40,29 +42,6 @@ sources_core = \
 	ST_species.c \
 	ST_sql.c \
 	ST_stats.c \
-	sw_src/filefuncs.c \
-	sw_src/generic.c \
-	sw_src/mymemory.c \
-	sw_src/pcg/pcg_basic.c \
-	sw_src/rands.c \
-	sw_src/SW_Carbon.c \
-	sw_src/SW_Control.c \
-	sw_src/SW_Files.c \
-	sw_src/SW_Flow.c \
-	sw_src/SW_Flow_lib.c \
-	sw_src/SW_Markov.c \
-	sw_src/SW_Model.c \
-	sw_src/SW_Output.c \
-	sw_src/SW_Output_get_functions.c \
-	sw_src/SW_Output_outarray.c \
-	sw_src/SW_Output_outtext.c \
-	sw_src/SW_Site.c \
-	sw_src/SW_Sky.c \
-	sw_src/SW_SoilWater.c \
-	sw_src/SW_VegEstab.c \
-	sw_src/SW_VegProd.c \
-	sw_src/SW_Weather.c \
-	sw_src/Times.c \
 	sxw.c \
 	sxw_environs.c \
 	sxw_resource.c \
@@ -73,25 +52,39 @@ sources_core = \
 	ST_seedDispersal.c
 
 sources_test = \
-	sw_src/googletest/googletest/src/gtest-all.cc \
-	sw_src/googletest/googletest/src/gtest_main.cc \
+	$(path_sw2)/googletest/googletest/src/gtest-all.cc \
+	$(path_sw2)/googletest/googletest/src/gtest_main.cc \
 	test/test_ST_mortality.cc
 
+sw2_sources = \
+	SW_Output_outarray.c \
+	SW_Output_outtext.c
+
+
 objects_core = $(sources_core:%.c=obj/%.o)
 objects_core_test = $(sources_core:%.c=obj/%_TEST.o)
 objects_test = $(sources_test:%.cc=obj/%.o)
 
-all: stepwat stepwat_test
 
-stepwat: $(objects_core)
-	$(CC) $(objects_core) $(CFLAGS) $(CPPFLAGS) $(LIBS) -o stepwat
+sw_LDFLAGS = $(LDFLAGS) -L. -L$(path_sw2)
+sw_LDLIBS = -l$(sw2) $(LDLIBS) -lm
+
+
+
+all: $(path_sw2)/$(lib_sw2) stepwat stepwat_test
+
+$(path_sw2)/$(lib_sw2):
+	@(cd $(path_sw2) && $(MAKE) $(lib_sw2) \
+		CC="$(CC)" CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" AR="$(AR)" \
+		sw_sources="$(sw2_sources)")
+
+stepwat: $(path_sw2)/$(lib_sw2) $(objects_core)
+	$(CC) $(objects_core) $(CFLAGS) $(CPPFLAGS) $(sw_LDLIBS) $(sw_LDFLAGS) -o stepwat
 	-@cp stepwat testing.sagebrush.master
 	-@cp stepwat testing.sagebrush.master/Stepwat_Inputs
 
-stepwat_test: $(objects_core_test) $(objects_test)
-	$(CXX) $(objects_core_test) $(objects_test) $(CFLAGS) $(CPPFLAGS) $(LIBS) -o stepwat_test
-	-@cp stepwat_test testing.sagebrush.master
-	-@cp stepwat_test testing.sagebrush.master/Stepwat_Inputs
+stepwat_test: $(path_sw2)/$(lib_sw2) $(objects_core_test) $(objects_test)
+	$(CXX) $(objects_core_test) $(objects_test) $(CFLAGS) $(CPPFLAGS) $(sw_LDLIBS) $(sw_LDFLAGS) -o stepwat_test
 
 obj/%.o: %.c
 	$(CC) $(CFLAGS) $(CPPFLAGS) $(INC_DIRS) -c $< -o $@
@@ -102,12 +95,16 @@ obj/%.o: %.cc
 obj/%_TEST.o: %.c
 	$(CC) $(CFLAGS) $(CPPFLAGS) $(INC_DIRS) -DSTDEBUG -c $< -o $@
 
+.PHONY: run_tests
+run_tests: stepwat_test
+	./stepwat_test
+
 .PHONY: bint_testing_nongridded
-bint_testing_nongridded: stepwat stepwat_test
+bint_testing_nongridded: stepwat
 	testing.sagebrush.master/Stepwat_Inputs/stepwat -d testing.sagebrush.master/Stepwat_Inputs -f files.in -o -i
 
 .PHONY: bint_testing_gridded
-bint_testing_gridded: stepwat stepwat_test
+bint_testing_gridded: stepwat
 	testing.sagebrush.master/stepwat -d testing.sagebrush.master -f files.in -g
 
 .PHONY: cleanall
@@ -119,27 +116,26 @@ clean: cleanobjs cleanbin documentation_clean
 .PHONY: cleanobjs
 cleanobjs:
 	-@find . -type f -name '*.o' -delete
+	-@$(RM) -f $(path_sw2)/$(lib_sw2)
 
 .PHONY: cleanbin
 cleanbin:
 	-@rm -f stepwat
 	-@rm -f stepwat_test
 	-@rm -f testing.sagebrush.master/stepwat
-	-@rm -f testing.sagebrush.master/stepwat_test
 	-@rm -f testing.sagebrush.master/Stepwat_Inputs/stepwat
-	-@rm -f testing.sagebrush.master/Stepwat_Inputs/stepwat_test
 
 .PHONY: output_clean
 output_clean:
 	-@rm -rf testing.sagebrush.master/Output/*
 	-@rm -rf testing.sagebrush.master/Stepwat_Inputs/Output/*
 
 .PHONY : documentation_clean
-documentation_clean : 
+documentation_clean :
 		@rm -rf Documentation/html
 
 .PHONY : documentation
-documentation: 
+documentation:
 		@doxygen doxyfile
 		@if open Documentation/html/index.html; \
 		  then echo "Success"; \