Overhaul seed dispersal output file. #353
Comments
This commit affects issues #355, #353, #352, and #309. I moved all code associated with seed dispersal into it's own file. This way it can potentially be added to non-gridded mode, not to mention that this makes the code much more readable. In ST_grid.c: * removed declarations and definitions for _cell_dist, _init_seed_dispersal and _do_seed_dispersal. They are now defined in ST_seedDispersal.c. _init_seed_dispersal has been renamed to initDispersalParameters and _do_seed_dispersal has been renamed to disperseSeeds. In ST_grid.h: * Removed declaration of UseSeedDispersal flag. It has been moved to ST_seedDispersal.h. In ST_main.c: * added an include statement for the new .h file. In ST_species.c: * added an include statement for the new .h file. In ST_stats.c: * added an include statement for the new .h file. In ST_seedDispersal.h: * Created the file. * Declared the two functions we want to export. * Declared the UseSeedDispersal flag. In ST_seedDispersal.c: * Declared _cell_dist (formerly in ST_grid.c) * Created two new functions (_do_bulk_dispersal and _do_precise_dispersal) to be written later. * Added definition for initDispersalParameters (formerly _init_seed_dispersal) * Added definition for disperseSeeds (formerly _do_seed_dispersal)
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I'm going to begin working on this issue now. To keep this module decoupled I will declare a function called I'm not sure what information we are looking for, so @kpalmqui if you have any suggestions let me know. I'll start with the easy part, which is outputting for which years |
This function will output every dispersal event (an instance of one cell giving seeds to another cell) in a single CSV file.
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@kpalmqui The commit above will output a CSV with an entry for every instance of once cell distributing seeds to a neighboring cell. If we need something more fine grained please let me know. |
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@chaukap my only concern here is that these files will get very large (tons of rows) when multiple species have seed dispersal on, when a larger landscape of cells are run, and when multiple interations are run. What do you think of potentially creating individual files for each grid cell (consistent with the other output files) where each file would focus on summarizing info for the "receiver" cell. |
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@kpalmqui I can do that! |
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We have decided that the format of the output files is sufficient and there is no need to output the probability of dispersal for every cell for every year. Therefore this issue is completed. |
The output file for seed dispersal info needs to be overhauled once we have seed dispersal working.
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