Merge pull request #27 from EBI-Metagenomics/Feature/Private-Data-Sur… #430

	---
	name: Testing

	on: [push, pull_request] # yamllint disable-line rule:truthy

	jobs:
	test:
	runs-on: ubuntu-latest

	services:
	db:
	image: postgres:16
	env:
	POSTGRES_DB: test_emg
	POSTGRES_USER: postgres
	POSTGRES_PASSWORD: postgres
	ports:
	- "5432:5432"

	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v3
	- uses: actions/setup-python@v5
	- uses: pre-commit/[email protected]

	- name: Build Docker image
	run: \|
	docker build --target django -t app:latest .

	- name: Check for unmigrated code
	run: \|
	docker run --rm app:latest makemigrations --check

	- name: Run tests
	run: \|
	docker run -v ${{ github.workspace }}/coverage:/app/coverage \
	-v ${{ github.workspace }}/slurm-dev-environment/fs/nfs/public:/app/data \
	--entrypoint bash \
	--add-host=host.docker.internal:host-gateway \
	-e DATABASE_URL=postgres://postgres:[email protected]:5432/emg --rm app:latest -c pytest

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	with:
	files: coverage/coverage.xml
	token: ${{ secrets.CODECOV_TOKEN }}


	# Debugging info:
	# This workflow file also works offline, using https://github.com/nektos/act.
	# Tested on Apple M series, with Colima.

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