Code

Feature/restructure outputs#6

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Merged

KateSakharova merged 20 commits intomainEBI-Metagenomics/miassembler:mainfrom feature/restructure_outputsEBI-Metagenomics/miassembler:feature/restructure_outputsCopy head branch name to clipboardMay 30, 2024

+1,207-476

Commits

Commits on May 20, 2024

• restructure outputs

  KateSakharova

  committed
  00ee934

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• change contaminated file

  KateSakharova

  committed
  ba1d0e7

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• change prefix for decontaminated reads

  KateSakharova

  committed
  e0db239

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• rm debugging

  KateSakharova

  committed
  3d770b5

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Commits on May 21, 2024

• Updated assembler rule priorities

  Ge94

  authored
  258b01d

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• Simpify the assembly operator, the one that gets the contigs from the assembler

  mberacochea

  committed
  5f6e1dd

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Commits on May 29, 2024

• begin metadata madness

  KateSakharova

  committed
  5156e43

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• adjust files

  KateSakharova

  committed
  c52eba5

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• typo

  KateSakharova

  committed
  5bc3cfa

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• Refactored the publishDir directives a bit

  mberacochea

  committed
  e52899f

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Commits on May 30, 2024

• Tidy up the publishDir directives, and and fix publish_file.

  mberacochea

  committed
  0774635

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• Fix some nf-core linting issues (many more to be fixed)

  mberacochea

  committed
  49848d1

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• Fixed a few more linting issues.

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  mberacochea

  committed
  a4b9027

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• Some more liniting issues fixed

  mberacochea

  committed
  f5acf08

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• ebi-metagen module patch

  mberacochea

  committed
  1edc01b

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• Migrate from nf-val to nf-schema. Basic nf-test (real data)

  mberacochea

  committed
  988ca49

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• Disable metaQuast ref download module (storage and compute intensive).

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  mberacochea

  committed
  902fb5b

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• Adjust the decontaminated contigs file name

  mberacochea

  committed
  6e1a00e

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• Rename the decontaminated.txt file to SRRXXX_decontaminated_contigs.txt

  mberacochea

  committed
  a80aac1

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• Merge pull request #7 from EBI-Metagenomics/feature/restructure_outputs_mbc

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  mberacochea

  authored
  1963f75

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