Annotation Web Apollo browser

Annotation Web Apollo browser

Access the Web Apollo browser - click here

Example region A (reference annotation + transcript assemblies) - click here

Example region A (reference annotation + predicted genes) - click here

Prepare files for loading to the Web Apollo browser

Before you begin

For both Mikado and Minos commands below, please make sure we change user_run=trainga1_run1 to your username and a new run name for each run you carry out.

For example, if your username is trainga25 and the run is run3, please change user_run=trainga1_run1 to user_run=trainga25_run3 for both commands below.

Password will be provided during the training session.

Mikado output

# From your Mikado output directory

cd mikado_output
user_run=trainga1_run1 && scp mikado.loci.gff3 [email protected]:/home/train/Annotation_workshop/WebApollo/Mikado/${user_run}.mikado.loci.gff3
...
...(after entering the password, you should see similar as below)
...
[email protected]'s password:
mikado.loci.gff3                                100%  327KB 326.9KB/s   00:00 

Minos output

# From your Minos output directory

cd minos_output/results
user_run=traina1_run1 && scp ARATH3702_EIv1.0.release.browser.gff3  [email protected]:/home/train/Annotation_workshop/WebApollo/Minos/${user_run}.ARATH3702_EIv1.0.release.browser.gff3
...
...(after entering the password, you should see similar as below)
...
[email protected]'s password:
ARATH3702_EIv1.0.release.browser.gff3           100%  396KB 396.0KB/s   00:00